| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004K04 | Sequence | 524 | 011827 (8) | gb|KJB27320.1| | 1e-88 | hypothetical protein B456_004G2909001, partial [Gossypium raimondii] | 640 | 012500 (3) | ref|XP_009785704.1| | 4e-47 | PREDICTED: beta-adaptin-like protein A [Nicotiana sylvestris] |
| JMFF029M06 | Sequence | 544 | 011827 (8) | gb|KJB27320.1| | 1e-88 | hypothetical protein B456_004G2909001, partial [Gossypium raimondii] | 625 | 012500 (3) | ref|XP_009785704.1| | 6e-41 | PREDICTED: beta-adaptin-like protein A [Nicotiana sylvestris] |
| JMSF002I18 | Sequence | 365 | 011827 (8) | ref|XP_011089076.1| | 5e-42 | PREDICTED: LOW QUALITY PROTEIN: beta-adaptin-like protein A [Sesamum indicum] | 476 | 012500 (3) | ref|XP_009785704.1| | 1e-22 | PREDICTED: beta-adaptin-like protein A [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF004K04+ TAGGAT
____________________________________________________________
consensus TAGGAT
. : . : . : . : . : . :
rJMFF004K04+ TGCCAACTGAATCAACCCCTGNTCCTCCCCCTCCCCCTCCCGCATTATCACTCAATCCTA
rJMFF029M06+ CTCCCCCTCCCGCATTATCACTCAATCCTA
____________________________________________________________
consensus TGCCAACTGAATCAACCCCTGNTCCTCCCCCTCCCCCTCCCGCATTATCACTCAATCCTA
. : . : . : . : . : . :
rJMFF004K04+ AAGGNGNTNTGGCTTCAACTGTTTTTCAGCAGAAATGGCGACAACTTCCAATATCAACAT
rJMFF029M06+ AAGCTGCTCTGGCTTCAACTGTTTTTCAGCAGAAATGGCGACAACTTCCAATATCAACAT
____________________________________________________________
consensus AAGGTGCTCTGGCTTCAACTGTTTTTCAGCAGAAATGGCGACAACTTCCAATATCAACAT
. : . : . : . : . : . :
rJMFF004K04+ CACAGGAGATCCCCATGAATCCGCAAGGAGTGGCAGCACTAACAACTATTCAGGCCCTTA
rJMFF029M06+ CACAGGAGATCCCCATGAATCCGCAAGGAGTGGCAGCACTAACAACTACTCAGGCCCTTA
____________________________________________________________
consensus CACAGGAGATCCCCATGAATCCGCAAGGAGTGGCAGCACTAACAACTATTCAGGCCCTTA
. : . : . : . : . : . :
rJMFF004K04+ TCAGGCACATGCAAGCCAATTCAATCAATTGCATCGCTTCAGGTGGTCAAGCCCCCAACT
rJMFF029M06+ TCAGGCACATGCAAGCCAATTCAATCAATTGCATCGCTTCAGGTGGTCAAGCCCCCAACT
rJMSF002I18+ GCACNTGCAAGNCAATTCNATCAATTGCATCGNTTCNGGNGGTCAANCCCCCAACT
____________________________________________________________
consensus TCAGGCACATGCAAGCCAATTCAATCAATTGCATCGCTTCAGGTGGTCAAGCCCCCAACT
. : . : . : . : . : . :
rJMFF004K04+ TCAAGTTNTTNTTNTTCGCACAGAATGCGAACGACGAATGCACCTATNTGGTAGAGTGCA
rJMFF029M06+ TCAAGTTTTTTTTNTTCGCACAGAATGCGAACGACGAATGCACCTATNTGGTAGAGTGCA
rJMSF002I18+ TCAAGTTTNTNTTTTTNGCACAGAATGCGAACGACGAATGCACCTATNTGGTNGAGTGCA
____________________________________________________________
consensus TCAAGTTTTTTTTTTTCGCACAGAATGCGAACGACGAATGCACCTATNTGGTAGAGTGCA
. : . : . : . : . : . :
rJMFF004K04+ TAACTAATTCAGCGTCATGCAAAGCACAAGTAAAGATCAAAGCCGATGATCAGAGTACAT
rJMFF029M06+ TAACTAATTCAGCGTCATGCAAAGCACAAGTAAAGATCAAAGCCGATGATCAGAGTACAT
rJMSF002I18+ TAACTAATTCAGCGTCNTGCAAAGCACAAGTAAAGATCAAAGCCGATGATCAGAGTACAT
____________________________________________________________
consensus TAACTAATTCAGCGTCATGCAAAGCACAAGTAAAGATCAAAGCCGATGATCAGAGTACAT
. : . : . : . : . : . :
rJMFF004K04+ NTCAGGCCTTNTTGGAATTGTTCCAATCAACCTTGTCCAAGTTCGGTTTATCCTAGGCAT
rJMFF029M06+ NTCAGGCCTTNTTGGAATTGTTCCAATCAACCTTGTCCAAGTTCGGTTTATCCTAGGCAT
rJMSF002I18+ CTCAGGCCTTCTTGGAATTGTTCCAATCAACCTTGTCCAAGTTCGGTTTATCCTAGGCAT
____________________________________________________________
consensus CTCAGGCCTTCTTGGAATTGTTCCAATCAACCTTGTCCAAGTTCGGTTTATCCTAGGCAT
. : . : . : . : . : . :
rJMFF004K04+ TCCCTGGGNTACNTCGGGTATCCTTAGAAGTAATCCTTGTTCATGTTCTTTCTTGTAATT
rJMFF029M06+ TCCCTGGGCTACCTCGGGTATCCTTAGAAGTAATCCTTGTTCATGTTCTTTCTTGTAATT
rJMSF002I18+ TCCCTGGGNTACCTCGGGTATCCTTAGAAGTAATCCTTGTTCANGTTNNTTCTNGNAATT
____________________________________________________________
consensus TCCCTGGGCTACCTCGGGTATCCTTAGAAGTAATCCTTGTTCATGTTCTTTCTTGTAATT
. : . : . : . : . : . :
rJMFF004K04+ TTATGTTTCAGAGAGGAATCGGAGAGTTCAACTGGAAAAAAAAAATTTGCAGAGGCTTTT
rJMFF029M06+ TTATGTTTCAGAGAGGAATCGGAGAGTTCAACTGGAAAAAAAAAATTTGCAGAGGCTTTT
rJMSF002I18+ TTATGTTTCAGAGAGGAATCGGAGAGTTCAACTGGAAAAAAAAAATTTGCAGAGGCTTTT
____________________________________________________________
consensus TTATGTTTCAGAGAGGAATCGGAGAGTTCAACTGGAAAAAAAAAATTTGCAGAGGCTTTT
. : . : . : . : . : . :
rJMFF004K04+ GTTAATGCATTTTGCACTCCATTGTGCCTCCTGACATGTAATTTTTGCTGCTTTGGGATT
rJMFF029M06+ GTTAATGCATTTTGCACTCCATTGTGCCTCCTGACATGTAATTTTTGCTGCTTTGGGATT
rJMSF002I18+ GTTAATGCATTTTGCACTCCATTGTGCCTCCTGACATGTAATTTTTGCTGCTTTGGGATT
____________________________________________________________
consensus GTTAATGCATTTTGCACTCCATTGTGCCTCCTGACATGTAATTTTTGCTGCTTTGGGATT
. : . : . : . : . : . :
rJMFF004K04+ -TGATTTGTTTCGACTTAATTGTA
rJMFF029M06+ -TGATTTGTTTCGACTTAATTGTATGAATAAGGAATAGGTAATTT
rJMSF002I18+ CTGATTTGTTTCGACTTAATTGTATGAATAAGAAATAGGTAATTTTGTGAGGAAAGGAGT
____________________________________________________________
consensus -TGATTTGTTTCGACTTAATTGTATGAATAAGGAATAGGTAATTTTGTGAGGAAAGGAGT