Contig 012498:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002B19Sequence314016668emb|CBI17712.3|3e-12unnamed protein product [Vitis vinifera]735012498 (2)ref|XP_009590839.1|4e-39PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Nicotiana tomentosiformis
JMSF041I24Sequence668006382 (4)ref|XP_009766201.1|2e-67PREDICTED: FRIGIDA-like protein 4a [Nicotiana sylvestris]620012498 (2)ref|XP_009590839.1|3e-34PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Nicotiana tomentosiformis

Alignment

This contig is upended


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rJMSF041I24+                                            CGGCGACGCCGCCGGCTGTCGTTGAA
rJMSF002B19+                                                       CCGGCTGTCGTTGAA
                      ____________________________________________________________
consensus                                               CGGCGACGCCGCCGGCTGTCGTTGAA
 
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rJMSF041I24+          GCTTGATTATGAAGAAATCATCACCGCTTGGTCCAACCGCGGCTCTCTTTACATCCAACC
rJMSF002B19+          GCTTGATTATGAAGAAATCATCACCGCTTGGTCCAACCGCGGCTCTCTTTACATCCAACC
                      ____________________________________________________________
consensus             GCTTGATTATGAAGAAATCATCACCGCTTGGTCCAACCGCGGCTCTCTTTACATCCAACC
 
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rJMSF041I24+          AGAGTGCCCCCAGACCGTGCCGGACATCATCCACGACGACTTTTTCTCCGGCGGCTTCTA
rJMSF002B19+          AGAGTGCCCCCAGACCGTGCCGGACATCATCCACGACGACTTTTTCTCCGGCGGCTTCTA
                      ____________________________________________________________
consensus             AGAGTGCCCCCAGACCGTGCCGGACATCATCCACGACGACTTTTTCTCCGGCGGCTTCTA
 
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rJMSF041I24+          TGAACCATCGTCCCACGGGACATGGGAGAGGAATCTGAGTTTGTATAGGGTTCCAGAAAT
rJMSF002B19+          TGAACCATCGTCCCACGGGACATGGGAGAGGAATCTGAGTTTGTATAGGGTTCCAGAAAT
                      ____________________________________________________________
consensus             TGAACCATCGTCCCACGGGACATGGGAGAGGAATCTGAGTTTGTATAGGGTTCCAGAAAT
 
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rJMSF041I24+          GGTGGGGAGTAGTGGCGGTAAGTGCCGAAACAATGGGGAAACGCCGGCGGAAGATGGCGG
rJMSF002B19+          GGTGGGGAGTAGTGGCGGTAAGTGCCGAAACAATGGGGAAACGCCGGCGGAAGATGGCGG
                      ____________________________________________________________
consensus             GGTGGGGAGTAGTGGCGGTAAGTGCCGAAACAATGGGGAAACGCCGGCGGAAGATGGCGG
 
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rJMSF041I24+          AGATGAAGAGGCGGCGAAAGAAGCTGCGGCGGGGCAAACGCACAGAGCGGCTAGCGTTTT
rJMSF002B19+          AGATGAAGAGGCGGCGAAAGAAGCTGCGGCGGGGCAAACGCACAGAGCGGCTAGCGTTTT
                      ____________________________________________________________
consensus             AGATGAAGAGGCGGCGAAAGAAGCTGCGGCGGGGCAAACGCACAGAGCGGCTAGCGTTTT
 
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rJMSF041I24+          GAGATACAAGGAGAAGAGGCAGAACCGACTCTTCTCTAAGACAATTCGATATCAAGTTCG
rJMSF002B19+          GAGATACAAGGAGAAGAGGCAGAACCGACTCTTCTCTAAGACAATTCGATATCAAGTTCG
                      ____________________________________________________________
consensus             GAGATACAAGGAGAAGAGGCAGAACCGACTCTTCTCTAAGACAATTCGATATCAAGTTCG
 
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rJMSF041I24+          TAAGCTCAATGCTGAAAAACGCCCTCGCGTT-----AAGGTTTGTAAAAAGAGATTGAAG
rJMSF002B19+          TAAGCTCAATGCTGAAAAACGCCCTCGCGTTAAGGGAAGGTTTGTAAAAAGAGATTGAAG
                      ____________________________________________________________
consensus             TAAGCTCAATGCTGAAAAACGCCCTCGCGTTAAGGGAAGGTTTGTAAAAAGAGATTGAAG
 
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rJMSF041I24+          TGTTTTAATTTATGATACGATCACGACAGAAGTATGAAGTATCAATCACCATATCAGTAG
rJMSF002B19+          TGTTTTAATTTATGATACGATCACGACAGAAGTATGAAGTATCAATCACCATATCAGTAG
                      ____________________________________________________________
consensus             TGTTTTAATTTATGATACGATCACGACAGAAGTATGAAGTATCAATCACCATATCAGTAG
 
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rJMSF041I24+          AGACCATCCAANTCATATATTGTGAATTCCTAAGAATTTAAGGATGAGCTGTACGTGTTT
rJMSF002B19+          AGACCATCCAAGTCATATATTGTGAATTCCTAAGAATTTAAGGATGAGCTGTACGTGTTT
                      ____________________________________________________________
consensus             AGACCATCCAAGTCATATATTGTGAATTCCTAAGAATTTAAGGATGAGCTGTACGTGTTT
 
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rJMSF041I24+          AAAGACACTTTTGTTTCTTGAAATTTTGTGTTTCACATNGCAAATNGTAAAGGAATGAC 
rJMSF002B19+          AAAGACACTTTTGTTTCTTGAAATTTTGTGTTTCACATTGCAAATTGTAAAGGAATGACT
                      ____________________________________________________________
consensus             AAAGACACTTTTGTTTCTTGAAATTTTGTGTTTCACATTGCAAATTGTAAAGGAATGACT
 
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rJMSF002B19+          GACAATAATATAAACCATGTGAAATAAACTACGAACTACGTCAAGAAAATGCATTAAGAC
                      ____________________________________________________________
consensus             GACAATAATATAAACCATGTGAAATAAACTACGAACTACGTCAAGAAAATGCATTAAGAC
 
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rJMSF002B19+          TGTTAGTCTATCTATGGAACATGATATACATTGCAAAGTGAAACACATACATACAAGTTC
                      ____________________________________________________________
consensus             TGTTAGTCTATCTATGGAACATGATATACATTGCAAAGTGAAACACATACATACAAGTTC