Contig 012494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002M11Sequence330007733 (3)707012494 (5)dbj|BAO57283.1|1e-35Myb family transcription factor [Ipomoea nil]
JMSF001D08Sequence235007733 (3)731012494 (5)dbj|BAO57283.1|3e-35Myb family transcription factor [Ipomoea nil]
JMSF002B07Sequence189007733 (3)724012494 (5)dbj|BAO57283.1|1e-67Myb family transcription factor [Ipomoea nil]
JMSF028J24Sequence683012494 (5)dbj|BAO57283.1|1e-55Myb family transcription factor [Ipomoea nil]
JMSF040H09Sequence792012494 (5)dbj|BAO57283.1|5e-48Myb family transcription factor [Ipomoea nil]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002B07+                                                          CCTACCGTGGGG
                      ____________________________________________________________
consensus                                                             CCTACCGTGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+                                       GTGTTCAGGTGCACGATCCCATT-CCAGTTA
rJMSF002B07+          TTTGCCGTATGCAACTGCATCTTTCCCTCGTGTTCAGGTGCACGATCCCATT-CCAGTTA
rJMSF040H09+                                       GTGTTCAGGTGCACGATCCCATTCCCAGTTA
                      ____________________________________________________________
consensus             TTTGCCGTATGCAACTGCATCTTTCCCTCGTGTTCAGGTGCACGATCCCATT-CCAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          AAGCACGCCCGGTATTTGACCCCAAAGAGACGGAAGATAATGNAAACCGTAAGGAAGCAT
rJMSF002B07+          AAGCACGCCCGGTATTTGACCCCAAAGAGACGGAAGATAATGAAAACCGTAAGGAAGCAT
rJMFF002M11+                                           AAGATAATGAAACCCGTAAGGAAGCAT
rJMSF040H09+          AAGCACGCCCGGTATTNGACCCCAAAGAGACGGAAGATAATGAAANCCGTAAGGAAGCAT
rJMSF001D08+                                                           TAAGGAAGCAT
                      ____________________________________________________________
consensus             AAGCACGCCCGGTATTTGACCCCAAAGAGACGGAAGATAATGAAAACCGTAAGGAAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          CTTCCGCCGCTTCAAACAGTGGGT-CAGTAAATATTCTAGAGAAACACATTGGCAAAAAC
rJMSF002B07+          CTTCCGCCGCTTCAAACAGTGGGT-CAGTAAATATTCTAGAGAAACACATTGGCAGAAAC
rJMFF002M11+          CTTCCGCCGCTTCAAACCAGTGGGTCAGTAAATATTCTAGAGAAACACATTGGCAGAAAC
rJMSF040H09+          CTTCCGCCGCTTCAAACAGTGGGT-CAGTAAATATTCTAGAGAAACACATTGGCAGAAAC
rJMSF001D08+          CTTCCGCCGCTTCAAACAGTGGGTCCAGTAAATATTCTAGAGAAACACATTGGCAGAAAC
                      ____________________________________________________________
consensus             CTTCCGCCGCTTCAAACAGTGGGT-CAGTAAATATTCTAGAGAAACACATTGGCAGAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          TCAGAAACCGAAACTGAAACCGAAACCGGTGAGAGCGAGGAGCAACAGTCCTCGGAAAAG
rJMSF002B07+          TCAGAAACCGAAACTGAAACCGAAACCGGTGAGAGCGAGGAGCAACAGTCCTCGGAAAAG
rJMFF002M11+          TCAGAAACCGAAACTGAAACCGAAACCGGTGAGAGCGAGGAGCAACAGTCCTCGGAAAAG
rJMSF040H09+          TCAGAAACCGAAACTGAAACCGAAACCGGTGAGAGCGAGGAGCAACAGTCCTCGGAAAAG
rJMSF001D08+          TCAGAAACCGAAACTGAAACCGAAACCGGTGAGAGCGAGGAGCAACAGTCCTCGGAAAAG
                      ____________________________________________________________
consensus             TCAGAAACCGAAACTGAAACCGAAACCGGTGAGAGCGAGGAGCAACAGTCCTCGGAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          ATCGGGAGCGAAGTCTCGGCCTTCAGACCAACCGAGACAACTAACTTCAAACTACGAACC
rJMSF002B07+          ATCGGGAGCGAAGTCTCGGCCTTCAGACCAACCGAGACAACTAACTTCAAACTACGAACC
rJMFF002M11+          ATCGGGAGCGAAGTCTCGGCCTTCAGACCAACCGAGACAACTAACTTCAAACTACGAACC
rJMSF040H09+          ATCGGGAGCGAAGTCTCGGCCTTCAGACCAACCGAGACAACTAACTTCAAACTACGAACC
rJMSF001D08+          ATCGGGAGCGAAGTCTCGGCCTTCAGACCAACCGAGACAACTAACTTCAAACTACGAACC
                      ____________________________________________________________
consensus             ATCGGGAGCGAAGTCTCGGCCTTCAGACCAACCGAGACAACTAACTTCAAACTACGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          AGCTCCAGCAAGAGGATGAAAGGCTTCCTGCCTTACAAGAGATGTTTAGCGGAAAGAGCC
rJMSF002B07+          AGCTCCAGCAAGAGGATGAAAGGCTTCCTGCCTTACAAGAGATGTTTAGCGGAAAGAGCC
rJMFF002M11+          AGCTCCAGCAAGAGGATGAAAGGCTTCCTGCCTTACAAGAGATGTTTAGCGGAAAGAGCC
rJMSF040H09+          AGCTCCAGCAAGAGGATGAAAGGCTTCCTGCCTTACAAGAGATGTTTAGCGGAAAGAGCC
rJMSF001D08+          AGCTCCAGCAAGAGGATGAAAGGCTTCCTGCCTTACAAGAGATGTTTAGCGGAAAGAGCC
                      ____________________________________________________________
consensus             AGCTCCAGCAAGAGGATGAAAGGCTTCCTGCCTTACAAGAGATGTTTAGCGGAAAGAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          ACCCACTCCTCGACCATAACGGGCGAGGAAAGGGAAGAACAACGAACCCGCCTTTGTTTA
rJMSF002B07+          ACCCACTCCTCGACCATAACGGGCGAGGAAAGGGAAGAACAACGAACCCGCCTTTGTTTA
rJMFF002M11+          ACCCACTCCTCGACCATAACGGGCGAGGAAAGGGAAGAACAACGAACCCGCCTTTGTTTA
rJMSF040H09+          ACCCACTCCTCGACCATAACGGGCGAGGAAAGGGAAGAACAACGAACCCGCCTTTGTTTA
rJMSF001D08+          ACCCACTCCTCGACCATAACGGGCGAGGAAAGGGAAGAACAACGAACCCGCCTTTGTTTA
                      ____________________________________________________________
consensus             ACCCACTCCTCGACCATAACGGGCGAGGAAAGGGAAGAACAACGAACCCGCCTTTGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          TAGCAGACCCTAATTAACTCGATCTCTGGGTTGTTGTTCCATTCTCATCTGTAAGCAGAG
rJMSF002B07+          TAGCAGACCCTAATTAACTCGATCTCTGGGTTGTTGTTCCATTCTCATCTGTAAGCAGAG
rJMFF002M11+          TAGCAGACCCTAATTAACTCGATCTCTGGGTTGTTGTTCCATTCTCATCTGTAAGCAGAG
rJMSF040H09+          TAGCAGACCCTAATTAACTCGATCTCTGGGTTGTTGTTCCATTCTCATCNGTAAGCAGAG
rJMSF001D08+          TAGCAGACCCTAATTAACTCGATCTCTGGGTTGTTGTTCCATTCTCATCTGTAAGCAGAG
                      ____________________________________________________________
consensus             TAGCAGACCCTAATTAACTCGATCTCTGGGTTGTTGTTCCATTCTCATCTGTAAGCAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          ATTTTGTGACAAAGAGTGAGCATNTGACTTAGTGCACAGTAAAGAGATATAGCACTTTGG
rJMSF002B07+          ATTTTGTGACAAAGAGTGAGCATCTGACTTAGTGCACAGTAAAGAGATATAGCACTTTGG
rJMFF002M11+          ATTTTGTGACAAAGAGTGAGCATCTGACTTAGTGCACAGTAAAGAGATATAGCACTTTGG
rJMSF040H09+          ATTTTGTGACAAAGAGTGAGCATCTGACTTAGTGCACAGTAAAGAGATATAGCACTTTGG
rJMSF001D08+          ATTTTGTGACAAAGAGTGAGCATCTGACTTAGTGCACAGTAAAGAGATATAGCACTTTGG
                      ____________________________________________________________
consensus             ATTTTGTGACAAAGAGTGAGCATCTGACTTAGTGCACAGTAAAGAGATATAGCACTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          TGGGTGACTGGATTAGCATGATGCAAAAATGGTGGATCAGTAGCAGAAGCTTGTCTGGTT
rJMSF002B07+          TGGGTGACTGGATTAGCATGATGCAAAAATGGTGGATCAGTAGCAGAAGCTTGTCTGGTT
rJMFF002M11+          TGGGTGACTGGATTAGCATGATGCAAAAATGGTGGATCAGTAGCAGAAGCTTGTCTGGTT
rJMSF040H09+          TGGGTGACTGGATTAGCATGATGCAAAAATGGTGGATCAGTAGCAGAAGCTTGTCTGGTT
rJMSF001D08+          TGGGTGACTGGATTAGCATGATGCAAAAATGGTGGATCAGTAGCAGAAGCTTGTCTGGTT
                      ____________________________________________________________
consensus             TGGGTGACTGGATTAGCATGATGCAAAAATGGTGGATCAGTAGCAGAAGCTTGTCTGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          TTTCCTATTCTTTTCCTCTCATTAATTGTCCCAAACATATATATATGGTCAGAATAATGT
rJMSF002B07+          TTTCCTATTCTTTTCCTCTCATTAATTGTCCCAAACATATATATATGGTCAGAATAATGT
rJMFF002M11+          TTTCCTATTCTTTTCCTCTCATTAATTGTCCCAAACATATATATATGGTCAGAATAATGT
rJMSF040H09+          TTTCCTATTCTTTTCCTCTCATTAATTGTCCCAAACATATATATATGGTCAGAATAATGT
rJMSF001D08+          TTTCCTATTCTTTTCCTCTCATTAATTGTCCCAAACATATATATATGGTCAGAATAATGT
                      ____________________________________________________________
consensus             TTTCCTATTCTTTTCCTCTCATTAATTGTCCCAAACATATATATATGGTCAGAATAATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028J24+          CTTGTAATGTTCTCCCTCCACCTGCACATTCTGATGAA                      
rJMSF002B07+          CTTGTAATGTTCTCCCTCCACCTGCACATTCTGATGAACTTGCTGTGTAATATT      
rJMFF002M11+          CTTGTAATGTTCTCCCTCCACCTGCACATTCTGATGAACTTGCTGTGTAATATTTCCATT
rJMSF040H09+          CTTGTAATGTTCTCCCTCCACCTGCACATTCTGATGAACTTGCTGTGTAATATTTCCATT
rJMSF001D08+          CTTGTAATGTTCTCCCTCCACCTGCACATTCTGATGAACTTGCTGTGTAATATTTCCATT
                      ____________________________________________________________
consensus             CTTGTAATGTTCTCCCTCCACCTGCACATTCTGATGAACTTGCTGTGTAATATTTCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002M11+          TCTGAACTGTATGAGGATTTTCAAGACACTTTTTGTTTGTCATGTTCATATCATCCTCTT
rJMSF040H09+          TCTGAACTGTATGAGGATTTTCAAGACACTTTTTGTTTGTCATGTTCATATCATCCTCTT
rJMSF001D08+          TCTGAACTGTATGAGGATTTTCAAGACACTTTTTGTTTGTCATGTTCATATCATCCTCTT
                      ____________________________________________________________
consensus             TCTGAACTGTATGAGGATTTTCAAGACACTTTTTGTTTGTCATGTTCATATCATCCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002M11+          CAAGTGTGAGATGATGAGGC                                        
rJMSF040H09+          CAAGTGTGAGATGATGAGGCCATGGCTTGTAACTGTAATA                    
rJMSF001D08+          CAAGTGTGAGATGATGAGGCCATGGCTTGTAACTGTAATATATATAGCTTCATTCTGAAT
                      ____________________________________________________________
consensus             CAAGTGTGAGATGATGAGGCCATGGCTTGTAACTGTAATATATATAGCTTCATTCTGAAT