| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027O05 | Sequence | 590 | 012487 (8) | gb|AFA45120.1| | 4e-13 | glycine-rich protein [Medicago sativa] | 712 | 012487 (8) | gb|AFA45120.1| | 7e-13 | glycine-rich protein [Medicago sativa] |
| JMFF051C21 | Sequence | 634 | 012487 (8) | gb|AFA45120.1| | 2e-12 | glycine-rich protein [Medicago sativa] | 377 | 012487 (8) | |||
| JMFN025D07 | Sequence | 567 | 012487 (8) | gb|AFA45120.1| | 1e-14 | glycine-rich protein [Medicago sativa] | |||||
| JMSF049L17 | Sequence | 685 | 012487 (8) | gb|AFA45120.1| | 5e-13 | glycine-rich protein [Medicago sativa] | 685 | 012487 (8) | gb|AFA45120.1| | 5e-13 | glycine-rich protein [Medicago sativa] |
| JMSF050L17 | Sequence | 688 | 012487 (8) | gb|AFA45120.1| | 5e-13 | glycine-rich protein [Medicago sativa] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF051C21- CCGGACAAACAAAGA
JMFF027O05- AAAGA
rJMSF049L17+ GGACAAACAAAGA
JMSF049L17- GGACAAACAAAGA
rJMSF050L17+ GGACAAACAAAGA
rJMFF027O05+ AAAGA
____________________________________________________________
consensus CCGGACAAACAAAGA
. : . : . : . : . : . :
JMFF051C21- AGAAGAAAAAACGTTCAAAATGAGATCCAAAGCCATTCTGATCCTTGCTTTTGTGCTAAT
JMFF027O05- AGAAGAAAAAACGTTCAAAATGAGATCCAAAGCCATTCTGATCCTTGCTTTTGTGCTAAT
JMFN025D07- ACGTTCAAAATGAGATCCAAAGCCATTCTGATCCTTGCTTTTGTGCTAAT
rJMSF049L17+ AGAAGAAAAAACGTTCAAAATGAGATCCAAAGCCATTCTGATCCTTGCTTTTGTGCTAAT
JMSF049L17- AGAAGAAAAAACGTTCAAAATGAGATCCAAAGCCATTCTGATCCTTGCTTTTGTGCTAAT
rJMSF050L17+ AGAAGAAAAAACGTTCAAAATGAGATCCAAAGCCATTCTGATCCTTGCTTTTGTGCTAAT
rJMFF027O05+ AGAAGAAAAAACGTTCAAAATGAGATCCAAAGCCATTCTGATCCTTGCTTTTGTGCTAAT
____________________________________________________________
consensus AGAAGAAAAAACGTTCAAAATGAGATCCAAAGCCATTCTGATCCTTGCTTTTGTGCTAAT
. : . : . : . : . : . :
JMFF051C21- CACATCAACCGCCATCCTTGCAGCTC-GCCTGAACCGGAAGAGCTCAATCACCTCGCCAG
JMFF027O05- CACATCAACCGCCATCCTTGCAGCTCGGCCTGAACCGGAAGAGCTCAATCACCTCGCCAG
JMFN025D07- CACATCAACCGCCATCCTTGCAGCTCGGCCTGAACCGGAAGAGCTCAATCACCTCGCCAG
rJMSF049L17+ CACATCAACCGCCATCCTTGCAGCTCGGCCTGAACCGGAAGAGCTCAATCACCTCGCCAG
JMSF049L17- CACATCAACCGCCATCCTTGCAGCTCGGCCTGAACCGGAAGAGCTCAATCACCTCGCCAG
rJMSF050L17+ CACATCAACCGCCATCCTTGCAGCTCGGCCTGAACCGGAAGAGCTCAATCACCTCGCCAG
rJMFF027O05+ CACATCAACCGCCATCCTTGCAGCTCGGCCTGAACCGGAAGAGCTCAATCACCTCGCCAG
____________________________________________________________
consensus CACATCAACCGCCATCCTTGCAGCTCGGCCTGAACCGGAAGAGCTCAATCACCTCGCCAG
. : . : . : . : . : . :
JMFF051C21- GGAGACATCCCAGAGAGGCGGCGGCGGGGGGTTCGGAGCACCGTACTTTGGGCCGGGAAG
JMFF027O05- GGAGACATCCCAGAGAGGCGGCGGCGGGGGGTTCGGAGCACCGTACTTTGGGCCGGGAAG
JMFN025D07- GGAGACATCCCATAGAGGCGGCGGCGGGGGGTTCGGAGCACCGTACTTTGGGCCGGGAAG
rJMSF049L17+ GGAGACATCCCAGAGAGGCGGCGGCGGGGGGTTCGGAGCACCGTACTTTGGGCCGGGAAG
JMSF049L17- GGAGACATCCCAGAGAGGCGGCGGCGGGGGGTTCGGAGCACCGTACTTTGGGCCGGGAAG
rJMSF050L17+ GGAGACATCCCAGAGAGGCGGCGGCGGGGGGTTCGGAGCACCGTACTTTGGGCCGGGAAG
rJMFF027O05+ GGAGACATCCCAGAGAGGCGGCGGCGGGGGGTTCGGAGCACCGTACTTTGGGCCGGGAAG
____________________________________________________________
consensus GGAGACATCCCAGAGAGGCGGCGGCGGGGGGTTCGGAGCACCGTACTTTGGGCCGGGAAG
. : . : . : . : . : . :
JMFF051C21- CGGGTTTGGAGTACCCGGTTTTGGGAGCGGGTTTGCGGGAGGATATGGATCCGGGTACGG
JMFF027O05- CGGGTTTGGAGTACCCGGTTTTGGGAGCGGGTTTGCGGGAGGATATGGATCCGGGTACGG
JMFN025D07- CGGGTTTGGAGTACCCGGTTTTGGGAGCGGGTTTGCGGGAGGATATGGATCCGGGTACGG
rJMSF049L17+ CGGGTTTGGAGTACCCGGTTTTGGGAGCGGGTTTGCGGGAGGATATGGATCCGGGTACGG
JMSF049L17- CGGGTTTGGAGTACCCGGTTTTGGGAGCGGGTTTGCGGGAGGATATGGATCCGGGTACGG
rJMSF050L17+ CGGGTTTGGAGTACCCGGTTTTGGGAGCGGGTTTGCGGGAGGATATGGATCCGGGTACGG
rJMFF027O05+ CGGGTTTGGAGTACCCGGTTTTGGGAGCGGGTTTGCGGGAGGATATGGATCCGGGTACGG
____________________________________________________________
consensus CGGGTTTGGAGTACCCGGTTTTGGGAGCGGGTTTGCGGGAGGATATGGATCCGGGTACGG
. : . : . : . : . : . :
JMFF051C21- TGGTCCGGCAGGAGGGTACGCGAGAGGCGGCGTAGTGAGGCCGACGGTGGTTTGCAAGGA
JMFF027O05- TGGTCCGGCAGGAGGGTACGCGAGAGGCGGCGTAGTGAGGCCGACGGTGGTTTGCAAGGA
JMFN025D07- TGGTCCGGCAGGAGGGTACGCGAGAGGCGGCGTATTGAGGCCGACGGTGGTTTGCAAGGA
rJMSF049L17+ TGGTCCGGCAGGAGGGTACGCGAGAGGCGGCGTAGTGAGGCCGACGGTGGTTTGCAAGGA
JMSF049L17- TGGTCCGGCAGGAGGGTACGCGAGAGGCGGCGTAGTGAGGCCGACGGTGGTTTGCAAGGA
rJMSF050L17+ TGGTCCGGCAGGAGGGTACGCGAGAGGCGGCGTAGTGAGGCCGACGGTGGTTTGCAAGGA
rJMFF027O05+ TGGTCCGGCAGGAGGGTACGCGAGAGGCGGCGTAGTGAGGCCGACGGTGGTTTGCAAGGA
____________________________________________________________
consensus TGGTCCGGCAGGAGGGTACGCGAGAGGCGGCGTAGTGAGGCCGACGGTGGTTTGCAAGGA
. : . : . : . : . : . :
JMFF051C21- GAAGGGCCCCTGTTACGGGAAGAAGCTGACGTGTCCGGCCAAGTGTTTCAAGTCGTTCGC
JMFF027O05- GAAGGGCCCCTGTTACGGGAAGAAGCTGACGTGTCCGGCCAAGTGTTTCAAGTCGTTCGC
JMFN025D07- GAAGGGCCCCTGTTACGGGAAGAAGCTGACGTGTCCGGCCAAGTGTTTCAAGTCGTTCGC
rJMSF049L17+ GAAGGGCCCCTGTTACGGGAAGAAGCTGACGTGTCCGGCCAAGTGTTTCAAGTCGTTCGC
JMSF049L17- GAAGGGCCCCTGTTACGGGAAGAAGCTGACGTGTCCGGCCAAGTGTTTCAAGTCGTTCGC
rJMSF050L17+ GAAGGGCCCCTGTTACGGGAAGAAGCTGACGTGTCCGGCCAAGTGTTTCAAGTCGTTCGC
rJMFF027O05+ GAAGGGCCCCTGTTACGGGAAGAAGCTGACGTGTCCGGCCAAGTGTTTCAAGTCGTTCGC
rJMFF051C21+ TGTTTCAAGTCGTTCGC
____________________________________________________________
consensus GAAGGGCCCCTGTTACGGGAAGAAGCTGACGTGTCCGGCCAAGTGTTTCAAGTCGTTCGC
. : . : . : . : . : . :
JMFF051C21- CAAAGGCGGGAAGGGCTACGGCTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
JMFF027O05- CAAAGGCGGGAAGGGCTACGGCTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
JMFN025D07- CAAAGGCGGGAAGGGCTACGGCTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
rJMSF049L17+ CAAAGGCGGGAAGGGCTACGGCTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
JMSF049L17- CAAAGGCGGGAAGGGCTACGGCTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
rJMSF050L17+ CAAAGGCGGGAAGGGCTACGGCTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
rJMFF027O05+ CAAAGGCGGGAAGGGCTACGGCTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
rJMFF051C21+ CAAAGGCGGGAAGGGCTACGGTTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
____________________________________________________________
consensus CAAAGGCGGGAAGGGCTACGGCTACGGCGGCGGCGGCGGTGGCTGCACCGTCGATTGCAA
. : . : . : . : . : . :
JMFF051C21- GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
JMFF027O05- GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
JMFN025D07- GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
rJMSF049L17+ GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
JMSF049L17- GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
rJMSF050L17+ GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
rJMFF027O05+ GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
rJMFF051C21+ GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
____________________________________________________________
consensus GAAAAAATGCAGCGCTTATTGTTAAGCGCCGCAGCTCGTTCATTCGTAAACGTTAATGAA
. : . : . : . : . : . :
JMFF051C21- AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGTAAG
JMFF027O05- AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGTAAG
JMFN025D07- AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGCAAG
rJMSF049L17+ AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGTAAG
JMSF049L17- AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGTAAG
rJMSF050L17+ AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGTAAG
rJMFF027O05+ AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGTAAG
rJMFF051C21+ AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGTAAG
____________________________________________________________
consensus AGCTACGCCCATACATATATATATATGGGATTACCTGTCTCTATATATGTGGCTGGTAAG
. : . : . : . : . : . :
JMFF051C21- ATGACTAAGATCGAGATTATATATATATGATGCTATGGTAGTCAGTTAATATTAGCAGCT
JMFF027O05- ATGACTAAGATCGAGATTATATATATATGATGCTATGGTAGTCAG
JMFN025D07- ATGACTAAGATCGAGATTATATATATATGATGCTATG
rJMSF049L17+ ATGACTAAGATCGAGATTATATATATATGATGCTATGGTAGTCAGTTAATATTAGCAGCT
JMSF049L17- ATGACTAAGATCGAGATTATATATATATGATGCTATGGTAGTCAGTTAATATTAGCAGCT
rJMSF050L17+ ATGACTAAGATCGAGATTATATATATATGATGCTATGGTAGTCAGTTAATATTAGCAGCT
rJMFF027O05+ ATGACTAAGATCGAGATTATATATATATGATGCTATGGTAGTCAGTTAATATTAGCAGCT
rJMFF051C21+ ATGACTAAGATCGAGATTATATATATATGATGCTATGGTAGTCAGTTAATATTAGCAGCT
____________________________________________________________
consensus ATGACTAAGATCGAGATTATATATATATGATGCTATGGTAGTCAGTTAATATTAGCAGCT
. : . : . : . : . : . :
JMFF051C21- ATGTCCTGCNACTATGTATG
rJMSF049L17+ ATGTCCTGCAACTATGTATGAACTATGAAGAATGTTGGTATGTAACGTATGAGTTTAGCG
JMSF049L17- ATGTCCTGCAACTATGTATGAACTATGAAGAATGTTGGTATGTAACGTATGAGTTTAGCG
rJMSF050L17+ ATGTCCTGCAACTATGTATGAACTATGAAGAATGTTGGTATGTAACGTATGAGTTTAGCG
rJMFF027O05+ ATGTCCTGCAACTATGTATGAACTATGAAGAATGTTGGTATGTAACGTATGAGTTTAGCG
rJMFF051C21+ ATGTCCTGCAACTATGTATGAACTATGAAGAATGTTGGTATGTAACGTATGAGTTTAGCG
____________________________________________________________
consensus ATGTCCTGCAACTATGTATGAACTATGAAGAATGTTGGTATGTAACGTATGAGTTTAGCG
. : . : . : . : . : . :
rJMSF049L17+ GGTTT
JMSF049L17- GGTTTT
rJMSF050L17+ GGTTTT
rJMFF027O05+ GGTTTT
rJMFF051C21+ GGTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGGATCCGGC
____________________________________________________________
consensus GGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGGATCCGGC