Contig 012486:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051B18Sequence498009460 (4)ref|XP_008362638.1|169PREDICTED: uncharacterized protein LOC103426324 [Malus domestica]533012486 (3)gb|KEH28369.1|5e-30Cyclin 4 [Medicago truncatula]
JMSF036O11Sequence615009460 (4)ref|XP_004172976.1|1e-71PREDICTED: uncharacterized LOC101215534, partial [Cucumis sativus]758012486 (3)ref|XP_011080459.1|266PREDICTED: uncharacterized protein LOC105163715 [Sesamum indicum]
JMSF051A15Sequence664009460 (4)gb|KJB35660.1|2e-108hypothetical protein B456_006G1227002, partial [Gossypium raimondii] gb|KJB35661756012486 (3)ref|XP_009769256.1|300PREDICTED: uncharacterized protein LOC104220139 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF051A15+ TCAATTCAGT
                      ____________________________________________________________
consensus TCAATTCAGT
 
. : . : . : . : . : . :
rJMSF051A15+ GGTATCGCTTAGGGTGTGAAAATGGTAAACGGGAACCTATTTCAGGGGCTATGAAACCTG
rJMSF036O11+ TGAAACCTG
                      ____________________________________________________________
consensus GGTATCGCTTAGGGTGTGAAAATGGTAAACGGGAACCTATTTCAGGGGCTATGAAACCTG
 
. : . : . : . : . : . :
rJMSF051A15+ CTTACGCACCGGAACCATTTGATGTTGGACAAATTTTGCAAGCTGATATGACGTTAGGGG
rJMSF036O11+ CTTACGCACCGGAACCATTTGATGTTGGACAAATTTTGCAAGCTGATATGACGTTAGGGG
                      ____________________________________________________________
consensus CTTACGCACCGGAACCATTTGATGTTGGACAAATTTTGCAAGCTGATATGACGTTAGGGG
 
. : . : . : . : . : . :
rJMSF051A15+ TCGAGACTGTTACTGTAACGACCACCGGCCCTATTGAACCAGCTGCGGGATTGGGAAACT
rJMSF036O11+ TCGAGACTGTTACTGTAACGACCACCGGCCCTATTGAACCAGCTGCGGGATNGGGAAACT
                      ____________________________________________________________
consensus TCGAGACTGTTACTGTAACGACCACCGGCCCTATTGAACCAGCTGCGGGATTGGGAAACT
 
. : . : . : . : . : . :
rJMSF051A15+ ATGTTGAAGCATTGGTGCGAAGGCATGAAACCGAATTTAATGTAGTTATTGTTCAAATGA
rJMSF036O11+ ATGTTGAAGCATTGGTGCGAAGGCATGAAACCGAATTTAATGTAGTTATTGTTCAGATGA
                      ____________________________________________________________
consensus ATGTTGAAGCATTGGTGCGAAGGCATGAAACCGAATTTAATGTAGTTATTGTTCAGATGA
 
. : . : . : . : . : . :
rJMSF051A15+ ATGGGTCAGATCATCCGTCACAATCTATCCACGTATTGCACGTTGGAAAGATGAGAATGA
rJMSF036O11+ ATGGGTCAGATCATCCGTCACAATCTATCCACGTATTGCACGTTGGAAAGATGAGAATGA
                      ____________________________________________________________
consensus ATGGGTCAGATCATCCGTCACAATCTATCCACGTATTGCACGTTGGAAAGATGAGAATGA
 
. : . : . : . : . : . :
rJMSF051A15+ AACTTTGTAAAGGGAAGACAACTTTGGCAAAGGAATACTATTCCACTTCAATGCAGCTCT
rJMSF036O11+ AACTTTGTAAAGGGAAGACAACTTTGGCAAAGGAATACTATTCCACTTCAATGCAGCTCT
rJMFF051B18+ TAAAGGGAAGACAACTTGGCAANAGGAATACTATTCCACTTCAATGCAGCTCT
                      ____________________________________________________________
consensus AACTTTGTAAAGGGAAGACAACTTTGGCAAAGGAATACTATTCCACTTCAATGCAGCTCT
 
. : . : . : . : . : . :
rJMSF051A15+ GTGGAGTTAGAGGAGGCGGGAACGCTGCTGCACAGGCAGCATTTTGGCAAGCGAAAGAAG
rJMSF036O11+ GTGGAGTTAGAGGAGGCGGGAACGCTGCTGCACAGGCAGCATTTTGGCAAGCGAAAGAAG
rJMFF051B18+ GTGGAGTTAGAGGAGGCGGGAACGCTGCTGCACAGGCAGCATTTTGGCAAGCGAAAGAAG
                      ____________________________________________________________
consensus GTGGAGTTAGAGGAGGCGGGAACGCTGCTGCACAGGCAGCATTTTGGCAAGCGAAAGAAG
 
. : . : . : . : . : . :
rJMSF051A15+ GGCTGTCGTTTGTTTTAGCGTTTGAAACAGAGCGCGAGAGAAATGCAGCTATTATGCTGG
rJMSF036O11+ GGCTGTCGTTTGTTTTAGCGTTTGAAACAGAGCGCGAGAGAAATGCAGCTATTATGCTGG
rJMFF051B18+ GGCTGTCGTTTGTTTTAGCGTTTGAAACAGAGCGCGAGAGAAATGCAGCTATTATTCTGG
                      ____________________________________________________________
consensus GGCTGTCGTTTGTTTTAGCGTTTGAAACAGAGCGCGAGAGAAATGCAGCTATTATGCTGG
 
. : . : . : . : . : . :
rJMSF051A15+ CAAGGCGGTTTTCATTCGACTGCAACATCACACTTGCAGGCCCCGACGATAGAGCTGCTC
rJMSF036O11+ CAAGGCGGTTTTCATTCGACTGCAACATCACACTTGCAGGCCCCGACGATAGAGCTGCTC
rJMFF051B18+ CAAGGCGGTTTTCATTCGACTGCAACATCACACTTGCAGGCCCCGACGATAGAGCTGCTC
                      ____________________________________________________________
consensus CAAGGCGGTTTTCATTCGACTGCAACATCACACTTGCAGGCCCCGACGATAGAGCTGCTC
 
. : . : . : . : . : . :
rJMSF051A15+ TGTGAGCTTTGGGCGTTGTTCGGAACAAACTGTAATTACACTGATTCTACATTGTGCCCT
rJMSF036O11+ TGTGAGCTTTGGGCGTTGTTCGGAACAAACTGTAATTACACTGATTCTACATTGTGCCCT
rJMFF051B18+ TGTGAGCTTTGGGCGTTGTTCGGAACAAACTGTAATTACACTGATTCTACATTGTGCCCT
                      ____________________________________________________________
consensus TGTGAGCTTTGGGCGTTGTTCGGAACAAACTGTAATTACACTGATTCTACATTGTGCCCT
 
. : . : . : . : . : . :
rJMSF051A15+ GTATCTATAGGCCTGCATTCATGCATCCAAATTAGGGTTTGTCTACAAAATTTGAGTTTT
rJMSF036O11+ GTATCTATAGGCCTGCATTCATGCATCCAAATTAGGGTTTGTCTACAAAATTTGAGTTTT
rJMFF051B18+ GTATCTATAGGCCTGCATTCATGCATCCAAATTAGGGTTTGTCTACAAAATTTGAGTTTT
                      ____________________________________________________________
consensus GTATCTATAGGCCTGCATTCATGCATCCAAATTAGGGTTTGTCTACAAAATTTGAGTTTT
 
. : . : . : . : . : . :
rJMSF051A15+ CAATAACCTTCATCACTATTATTATTTTCATCTTCTTGGTCATTCTTTTATTGGGTTCCA
rJMSF036O11+ CAATAACCTTCATCACTATTATTATTTTCATCTTCTTGGTCATTCTTTTATTGGGTTCCA
rJMFF051B18+ CAATAACCTTCATCACTATTATTATTTTCATCTTCTTGGTCATTCTTTTATTGGGTTCCA
                      ____________________________________________________________
consensus CAATAACCTTCATCACTATTATTATTTTCATCTTCTTGGTCATTCTTTTATTGGGTTCCA
 
. : . : . : . : . : . :
rJMSF051A15+ TTTGATTGTAATGATCTCTGGGTT
rJMSF036O11+ TTTGATTGTAATGATCTCTGGGTTTGTTCTTCCCGGCTGAACAACTAATGATATTGAGAA
rJMFF051B18+ TTTGATTGTAATGATCTCTGGGTTTGTTCTTCCCGGCTGAACAACTAATGATATTGAGAA
                      ____________________________________________________________
consensus TTTGATTGTAATGATCTCTGGGTTTGTTCTTCCCGGCTGAACAACTAATGATATTGAGAA
 
. : . : . : . : . : . :
rJMSF036O11+ GAATTCTTTGTACTGGA
rJMFF051B18+ GAATTCTTTGTACTGGAAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGGGC
                      ____________________________________________________________
consensus GAATTCTTTGTACTGGAAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGGGC