Contig 012485:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050N04Sequence641005297 (3)ref|XP_009621313.1|5e-60PREDICTED: glycerol-3-phosphate acyltransferase 3 [Nicotiana tomentosiformis]580012485 (3)emb|CDP14512.1|3e-98unnamed protein product [Coffea canephora]
JMSF012M23Sequence231005297 (3)717012485 (3)emb|CDP14512.1|3e-150unnamed protein product [Coffea canephora]
JMSF048P02Sequence677005297 (3)ref|XP_009621313.1|1e-67PREDICTED: glycerol-3-phosphate acyltransferase 3 [Nicotiana tomentosiformis]730012485 (3)emb|CDP14512.1|3e-149unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF012M23+             CCTAAACAGGTTTTTGTGGCAAATCACACGTCAATGATTGATTTCATCATTTTAGAA
rJMSF048P02+              CTAAACAGGTTTTTGTGGCAAATCACACGTCAATGATTGATTTCATCATTTTAGAA
                      ____________________________________________________________
consensus                CCTAAACAGGTTTTTGTGGCAAATCACACGTCAATGATTGATTTCATCATTTTAGAA
 
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rJMSF012M23+          CAGATGACTGCCTTTGCTGTTATCATGCAGAAACATCCTGGATGGGTTGGATTATTGCAG
rJMSF048P02+          CAGATGACTGCCTTTGCTGTTATCATGCAGAAACATCCTGGATGGGTTGGATTATTGCAG
                      ____________________________________________________________
consensus             CAGATGACTGCCTTTGCTGTTATCATGCAGAAACATCCTGGATGGGTTGGATTATTGCAG
 
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rJMSF012M23+          AGCACCATTTTAGAAAGTGTAGGATGTATTTGGTTCAATCGCTCAGAGGCCAAGGATCGT
rJMSF048P02+          AGCACCATTTTAGAAAGTGTAGGATGTATTTGGTTCAATCGCTCAGAGGCCAAGGATCGT
                      ____________________________________________________________
consensus             AGCACCATTTTAGAAAGTGTAGGATGTATTTGGTTCAATCGCTCAGAGGCCAAGGATCGT
 
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rJMSF012M23+          GAAATTGTAGCAAGGAAGCTTAGGGAACATGTTGAAGGGGCTGATAATAATCCTCTTCTT
rJMSF048P02+          GAAATTGTAGCAAGGAAGCTTAGGGAACATGTTGAAGGGGCTGATAATAATCCTCTTCTT
rJMFF050N04+                              TAGGGAACATGTTGAAGGGGCTGATAATAATCCTCTTCTT
                      ____________________________________________________________
consensus             GAAATTGTAGCAAGGAAGCTTAGGGAACATGTTGAAGGGGCTGATAATAATCCTCTTCTT
 
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rJMSF012M23+          ATATTCCCAGAGGGAACTTGTGTCAATAACCACTACACTGTCATGTTCAAGAAGGGTGCA
rJMSF048P02+          ATATTCCCAGAGGGAACTTGTGTCAATAACCACTACACTGTCATGTTCAAGAAGGGTGCA
rJMFF050N04+          ATATTCCCAGAGGGAACTTGTGTCAATAACCACTACACTGTCATGTTCAAGAAGGGTGCA
                      ____________________________________________________________
consensus             ATATTCCCAGAGGGAACTTGTGTCAATAACCACTACACTGTCATGTTCAAGAAGGGTGCA
 
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rJMSF012M23+          TTTGAGCTTGGGTGCACAGTTTGCCCAGTTGCAATCAAGTACAACAAAATTTTTGTTGAT
rJMSF048P02+          TTTGAGCTTGGGTGCACAGTTTGCCCAGTTGCAATCAAGTACAACAAAATTTTTGTTGAT
rJMFF050N04+          TTTGAGCTTGGGTGCACAGTTTGCCCAGTTGCAATCAAGTACAACAAAATTTTTGTTGAT
                      ____________________________________________________________
consensus             TTTGAGCTTGGGTGCACAGTTTGCCCAGTTGCAATCAAGTACAACAAAATTTTTGTTGAT
 
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rJMSF012M23+          GCTTTCTGGAATAGTAGAAAGCAATCTTTCACAATGCACCTGCTGCAGCTCATGACGTCG
rJMSF048P02+          GCTTTCTGGAATAGTAGAAAGCAATCTTTCACAATGCACCTGCTGCAGCTCATGACGTCG
rJMFF050N04+          GCTTTCTGGAATAGTAGAAAGCAATCTTTCACAATGCACCTGCTGCAGCTCATGACGTCG
                      ____________________________________________________________
consensus             GCTTTCTGGAATAGTAGAAAGCAATCTTTCACAATGCACCTGCTGCAGCTCATGACGTCG
 
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rJMSF012M23+          TGGGCTGTTGTTTGTGATGTTTGGTACTTGGAGCCTCAAAATTTAAAACCTGGTGAAACA
rJMSF048P02+          TGGGCTGTTGTTTGTGATGTTTGGTACTTGGAGCCTCAAAATTTAAAACCTGGTGAAACA
rJMFF050N04+          TGGGCTGTTGTTTGTGATGTTTGGTACTTGGAGCCTCAAAATTTAAAACCTGGTGAAACA
                      ____________________________________________________________
consensus             TGGGCTGTTGTTTGTGATGTTTGGTACTTGGAGCCTCAAAATTTAAAACCTGGTGAAACA
 
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rJMSF012M23+          CCAATAGAGTTTGCAGAGAGGGTGAGGGACATCATTTCTGTTCGAGCAGGTCTTAAGAAG
rJMSF048P02+          CCAATAGAGTTTGCAGAGAGGGTGAGGGACATCATTTCTGTTCGAGCAGGTCTTAAGAAG
rJMFF050N04+          CCAATAGAGTTTGCAGAGAGGGTGAGGGACATCATTTCTGTTCGAGCAGGTCTTAAGAAG
                      ____________________________________________________________
consensus             CCAATAGAGTTTGCAGAGAGGGTGAGGGACATCATTTCTGTTCGAGCAGGTCTTAAGAAG
 
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rJMSF012M23+          GTTCCTTGGGATGGATATTTGAAATATTCTCGCCCTAGCCCCAAGCACCGAGAGAGGAAG
rJMSF048P02+          GTTCCTTGGGATGGATATTTGAAATATTCTCGCCCTAGCCCCAAGCACCGAGAGAGGAAG
rJMFF050N04+          GTTCCTTGGGATGGATATTTGAAATATTCTCGCCCTAGCCCCAAGCACCGAGAGAGGAAG
                      ____________________________________________________________
consensus             GTTCCTTGGGATGGATATTTGAAATATTCTCGCCCTAGCCCCAAGCACCGAGAGAGGAAG
 
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rJMSF012M23+          CAACAGAGTTTTGCAGAGTGTATACTCCGTGGCTTGGAACAGAAGTAGAAGTTGAAGAAA
rJMSF048P02+          CAACAGAGTTTTGCAGAGTGTATACTCCGTGGCTTGGAACAGAAGTAGAAGTTGAAGAAA
rJMFF050N04+          CAACAGAGTTTTGCAGAGTGTATACTCCGTGGCTTGGAACAGAAGTAGAAGTTGAAGAAA
                      ____________________________________________________________
consensus             CAACAGAGTTTTGCAGAGTGTATACTCCGTGGCTTGGAACAGAAGTAGAAGTTGAAGAAA
 
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rJMSF012M23+          TGTTGTTAAGCACACTTTTTGTTCCGCTGTTACAATTTTATTCGAATGACCCACCATTTT
rJMSF048P02+          TGTTGTTAAGCACACTTTTTGTTCCGCTGTTACAATTTTATTCGAATGACCCACCATTTT
rJMFF050N04+          TGTTGTTAAGCACACTTTTTGTTCCGCTGTTACAATTTTATTCGAATGACCCACCATTTT
                      ____________________________________________________________
consensus             TGTTGTTAAGCACACTTTTTGTTCCGCTGTTACAATTTTATTCGAATGACCCACCATTTT
 
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rJMSF048P02+          GTATTTTATTTATT                                              
rJMFF050N04+          GTATTTTATTTATTTGGACAAAGCAATTTTATTCAAGTGAAGTGACCACCTTTTTGCATC
                      ____________________________________________________________
consensus             GTATTTTATTTATTTGGACAAAGCAATTTTATTCAAGTGAAGTGACCACCTTTTTGCATC