clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF017E15 | Sequence | 592 | 005021 (7) | ref|XP_009803019.1| | 7e-75 | PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris] | 690 | 012476 (7) | ref|XP_006365488.1| | 1e-72 | PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum] |
JMFF039F19 | Sequence | 512 | 005021 (7) | ref|XP_009803019.1| | 1e-62 | PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris] | 646 | 012476 (7) | ref|XP_006365488.1| | 3e-86 | PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum] |
JMFF050A24 | Sequence | 586 | 005021 (7) | ref|XP_009803019.1| | 1e-74 | PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris] | 618 | 012476 (7) | ref|XP_006365488.1| | 2e-68 | PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum] |
JMFN006G06 | Sequence | 624 | 012476 (7) | ref|XP_006365488.1| | 7e-71 | PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum] | |||||
JMFS068F01 | Sequence | 537 | 012476 (7) | ref|XP_009803019.1| | 1e-47 | PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris] | |||||
JMSF012G07 | Sequence | 244 | 005021 (7) | ref|XP_009803020.1| | 1e-24 | PREDICTED: long chain acyl-CoA synthetase 2 isoform X2 [Nicotiana sylvestris] | 720 | 012476 (7) | ref|XP_006365488.1| | 1e-110 | PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum] |
JMSF024B02 | Sequence | 700 | 022119 | gb|KEH40770.1| | 3e-14 | long-chain fatty acyl CoA ligase [Medicago truncatula] | 713 | 012476 (7) | ref|XP_006365488.1| | 5e-118 | PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFS068F01- GATCTTGGCTAATTAAAGCCGACTCTGTTCTGT
____________________________________________________________
consensus GATCTTGGCTAATTAAAGCCGACTCTGTTCTGT
. : . : . : . : . : . :
JMFS068F01- GGAGTGCCACCAGTTTATGACCCGGTATGCACATGCGCAAAGGATAATATATTGGCGTGG
____________________________________________________________
consensus GGAGTGCCACCAGTTTATGACCCGGTATGCACATGCGCAAAGGATAATATATTGGCGTGG
. : . : . : . : . : . :
JMFS068F01- TGGCACGCGTGAAGAAACTACTTTGTCGACTATGCCTATAACTACAAATCGAAGAAATAG
____________________________________________________________
consensus TGGCACGCGTGAAGAAACTACTTTGTCGACTATGCCTATAACTACAAATCGAAGAAATAG
. : . : . : . : . : . :
JMFS068F01- GGAAAAAGGGCTAAAGCACGATGAACCGGACCTTTTCTTGGACAGGCTGGGGTTTGACAA
____________________________________________________________
consensus GGAAAAAGGGCTAAAGCACGATGAACCGGACCTTTTCTTGGACAGGCTGGGGTTTGACAA
. : . : . : . : . : . :
JMFS068F01- GATTAAACTAGCATTTGGTGGGCGAGTTCGGCTTATGCTATCTGGAGCCGCTCCCTTGCC
____________________________________________________________
consensus GATTAAACTAGCATTTGGTGGGCGAGTTCGGCTTATGCTATCTGGAGCCGCTCCCTTGCC
. : . : . : . : . : . :
JMFS068F01- TATGCACGAGGAGGAGTTTCTGAGGGTGACGAGGGGCTGGGTTTAGTCGCAAGGATATGA
____________________________________________________________
consensus TATGCACGAGGAGGAGTTTCTGAGGGTGACGAGGGGCTGGGTTTAGTCGCAAGGATATGA
. : . : . : . : . : . :
JMFS068F01- CCTTACTGAAAGCTGAGGGGGATGCTTCAAGTGCATTGCCAATGTGTTCCCGATGACAGG
____________________________________________________________
consensus CCTTACTGAAAGCTGAGGGGGATGCTTCAAGTGCATTGCCAATGTGTTCCCGATGACAGG
. : . : . : . : . : . :
JMFS068F01- GACTGGAGGTGTGCCGATGACTACTATTGAGGCAAGACTTGAATCGGTGCCCGAGATGGG
____________________________________________________________
consensus GACTGGAGGTGTGCCGATGACTACTATTGAGGCAAGACTTGAATCGGTGCCCGAGATGGG
. : . : . : . : . : . :
JMFS068F01- ATACGATGCACTTGGCACTGTACCCCGTGGTGAAATTTGTCTTCGGGGAAAGACATTGTT
rJMSF024B02+ GTGAAATTTGTCTTCGGGGAAAGACATTGTT
rJMSF012G07+ T
____________________________________________________________
consensus ATACGATGCACTTGGCACTGTACCCCGTGGTGAAATTTGTCTTCGGGGAAAGACATTGTT
. : . : . : . : . : . :
JMFS068F01- TTCAGGGTCTCATAAGCGGGAAGA
rJMSF024B02+ TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
rJMSF012G07+ TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
rJMFF017E15+ GGATGGATGTTNTCA
____________________________________________________________
consensus TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
. : . : . : . : . : . :
rJMSF024B02+ TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMSF012G07+ TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMFF039F19+ CGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMFF017E15+ TACAGGNNATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
____________________________________________________________
consensus TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
. : . : . : . : . : . :
rJMSF024B02+ GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMSF012G07+ GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF039F19+ GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF017E15+ GAACATATTCAAG-TGTCTCAAGGGGAATACGTCGCTGTNGAAAGCCTGGAAAGCACTTA
JMFN006G06- CGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF050A24+ AAGCCTGGAAAGCACTTA
____________________________________________________________
consensus GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
. : . : . : . : . : . :
rJMSF024B02+ TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMSF012G07+ TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF039F19+ TTNTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF017E15+ TTGTAGCTGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
JMFN006G06- TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF050A24+ TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
____________________________________________________________
consensus TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
. : . : . : . : . : . :
rJMSF024B02+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMSF012G07+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF039F19+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF017E15+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
JMFN006G06- GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF050A24+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
____________________________________________________________
consensus GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
. : . : . : . : . : . :
rJMSF024B02+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMSF012G07+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF039F19+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF017E15+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
JMFN006G06- AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF050A24+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
____________________________________________________________
consensus AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
. : . : . : . : . : . :
rJMSF024B02+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMSF012G07+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF039F19+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF017E15+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGCAATGTTACGAGCAGTCCA
JMFN006G06- GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF050A24+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
____________________________________________________________
consensus GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
. : . : . : . : . : . :
rJMSF024B02+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMSF012G07+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF039F19+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF017E15+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
JMFN006G06- CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF050A24+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
____________________________________________________________
consensus CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
. : . : . : . : . : . :
rJMSF024B02+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMSF012G07+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF039F19+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF017E15+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
JMFN006G06- AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF050A24+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
____________________________________________________________
consensus AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
. : . : . : . : . : . :
rJMSF024B02+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMSF012G07+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF039F19+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF017E15+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
JMFN006G06- GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF050A24+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
____________________________________________________________
consensus GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
. : . : . : . : . : . :
rJMSF024B02+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMSF012G07+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF039F19+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF017E15+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
JMFN006G06- CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF050A24+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
____________________________________________________________
consensus CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
. : . : . : . : . : . :
rJMSF024B02+ GTCTATATAAACTTCTGCGCTG
rJMSF012G07+ GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTC
rJMFF039F19+ GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
rJMFF017E15+ GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
JMFN006G06- GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
rJMFF050A24+ GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
____________________________________________________________
consensus GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
. : . : . : . : . : . :
rJMFF039F19+ AAAGAT
rJMFF017E15+ AAAGAT
JMFN006G06- AAAGATTGAAGCTTG
rJMFF050A24+ AAAGATTGAAGCTTGXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus AAAGATTGAAGCTTGNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG