Contig 012476:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017E15Sequence592005021 (7)ref|XP_009803019.1|7e-75PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]690012476 (7)ref|XP_006365488.1|1e-72PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFF039F19Sequence512005021 (7)ref|XP_009803019.1|1e-62PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]646012476 (7)ref|XP_006365488.1|3e-86PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFF050A24Sequence586005021 (7)ref|XP_009803019.1|1e-74PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]618012476 (7)ref|XP_006365488.1|2e-68PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFN006G06Sequence624012476 (7)ref|XP_006365488.1|7e-71PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFS068F01Sequence537012476 (7)ref|XP_009803019.1|1e-47PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]
JMSF012G07Sequence244005021 (7)ref|XP_009803020.1|1e-24PREDICTED: long chain acyl-CoA synthetase 2 isoform X2 [Nicotiana sylvestris]720012476 (7)ref|XP_006365488.1|1e-110PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMSF024B02Sequence700022119gb|KEH40770.1|3e-14long-chain fatty acyl CoA ligase [Medicago truncatula]713012476 (7)ref|XP_006365488.1|5e-118PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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JMFS068F01-                                      GATCTTGGCTAATTAAAGCCGACTCTGTTCTGT
                      ____________________________________________________________
consensus                                        GATCTTGGCTAATTAAAGCCGACTCTGTTCTGT
 
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JMFS068F01-           GGAGTGCCACCAGTTTATGACCCGGTATGCACATGCGCAAAGGATAATATATTGGCGTGG
                      ____________________________________________________________
consensus             GGAGTGCCACCAGTTTATGACCCGGTATGCACATGCGCAAAGGATAATATATTGGCGTGG
 
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JMFS068F01-           TGGCACGCGTGAAGAAACTACTTTGTCGACTATGCCTATAACTACAAATCGAAGAAATAG
                      ____________________________________________________________
consensus             TGGCACGCGTGAAGAAACTACTTTGTCGACTATGCCTATAACTACAAATCGAAGAAATAG
 
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JMFS068F01-           GGAAAAAGGGCTAAAGCACGATGAACCGGACCTTTTCTTGGACAGGCTGGGGTTTGACAA
                      ____________________________________________________________
consensus             GGAAAAAGGGCTAAAGCACGATGAACCGGACCTTTTCTTGGACAGGCTGGGGTTTGACAA
 
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JMFS068F01-           GATTAAACTAGCATTTGGTGGGCGAGTTCGGCTTATGCTATCTGGAGCCGCTCCCTTGCC
                      ____________________________________________________________
consensus             GATTAAACTAGCATTTGGTGGGCGAGTTCGGCTTATGCTATCTGGAGCCGCTCCCTTGCC
 
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JMFS068F01-           TATGCACGAGGAGGAGTTTCTGAGGGTGACGAGGGGCTGGGTTTAGTCGCAAGGATATGA
                      ____________________________________________________________
consensus             TATGCACGAGGAGGAGTTTCTGAGGGTGACGAGGGGCTGGGTTTAGTCGCAAGGATATGA
 
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JMFS068F01-           CCTTACTGAAAGCTGAGGGGGATGCTTCAAGTGCATTGCCAATGTGTTCCCGATGACAGG
                      ____________________________________________________________
consensus             CCTTACTGAAAGCTGAGGGGGATGCTTCAAGTGCATTGCCAATGTGTTCCCGATGACAGG
 
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JMFS068F01-           GACTGGAGGTGTGCCGATGACTACTATTGAGGCAAGACTTGAATCGGTGCCCGAGATGGG
                      ____________________________________________________________
consensus             GACTGGAGGTGTGCCGATGACTACTATTGAGGCAAGACTTGAATCGGTGCCCGAGATGGG
 
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JMFS068F01-           ATACGATGCACTTGGCACTGTACCCCGTGGTGAAATTTGTCTTCGGGGAAAGACATTGTT
rJMSF024B02+                                       GTGAAATTTGTCTTCGGGGAAAGACATTGTT
rJMSF012G07+                                                                     T
                      ____________________________________________________________
consensus             ATACGATGCACTTGGCACTGTACCCCGTGGTGAAATTTGTCTTCGGGGAAAGACATTGTT
 
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JMFS068F01-           TTCAGGGTCTCATAAGCGGGAAGA                                    
rJMSF024B02+          TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
rJMSF012G07+          TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
rJMFF017E15+                                                       GGATGGATGTTNTCA
                      ____________________________________________________________
consensus             TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
 
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rJMSF024B02+          TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMSF012G07+          TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMFF039F19+                                     CGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMFF017E15+          TACAGGNNATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
                      ____________________________________________________________
consensus             TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
 
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rJMSF024B02+          GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMSF012G07+          GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF039F19+          GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF017E15+          GAACATATTCAAG-TGTCTCAAGGGGAATACGTCGCTGTNGAAAGCCTGGAAAGCACTTA
JMFN006G06-                                         CGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF050A24+                                                    AAGCCTGGAAAGCACTTA
                      ____________________________________________________________
consensus             GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
 
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rJMSF024B02+          TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMSF012G07+          TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF039F19+          TTNTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF017E15+          TTGTAGCTGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
JMFN006G06-           TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF050A24+          TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
                      ____________________________________________________________
consensus             TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
 
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rJMSF024B02+          GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMSF012G07+          GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF039F19+          GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF017E15+          GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
JMFN006G06-           GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF050A24+          GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
                      ____________________________________________________________
consensus             GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
 
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rJMSF024B02+          AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMSF012G07+          AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF039F19+          AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF017E15+          AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
JMFN006G06-           AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF050A24+          AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
                      ____________________________________________________________
consensus             AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
 
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rJMSF024B02+          GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMSF012G07+          GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF039F19+          GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF017E15+          GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGCAATGTTACGAGCAGTCCA
JMFN006G06-           GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF050A24+          GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
                      ____________________________________________________________
consensus             GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
 
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rJMSF024B02+          CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMSF012G07+          CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF039F19+          CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF017E15+          CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
JMFN006G06-           CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF050A24+          CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
                      ____________________________________________________________
consensus             CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
 
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rJMSF024B02+          AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMSF012G07+          AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF039F19+          AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF017E15+          AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
JMFN006G06-           AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF050A24+          AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
                      ____________________________________________________________
consensus             AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
 
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rJMSF024B02+          GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMSF012G07+          GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF039F19+          GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF017E15+          GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
JMFN006G06-           GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF050A24+          GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
                      ____________________________________________________________
consensus             GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
 
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rJMSF024B02+          CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMSF012G07+          CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF039F19+          CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF017E15+          CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
JMFN006G06-           CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF050A24+          CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
                      ____________________________________________________________
consensus             CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
 
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rJMSF024B02+          GTCTATATAAACTTCTGCGCTG                                      
rJMSF012G07+          GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTC            
rJMFF039F19+          GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
rJMFF017E15+          GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
JMFN006G06-           GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
rJMFF050A24+          GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
                      ____________________________________________________________
consensus             GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
 
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rJMFF039F19+          AAAGAT                                                      
rJMFF017E15+          AAAGAT                                                      
JMFN006G06-           AAAGATTGAAGCTTG                                             
rJMFF050A24+          AAAGATTGAAGCTTGXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAAGATTGAAGCTTGNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG