Contig 012476:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017E15Sequence592005021 (7)ref|XP_009803019.1|7e-75PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]690012476 (7)ref|XP_006365488.1|1e-72PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFF039F19Sequence512005021 (7)ref|XP_009803019.1|1e-62PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]646012476 (7)ref|XP_006365488.1|3e-86PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFF050A24Sequence586005021 (7)ref|XP_009803019.1|1e-74PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]618012476 (7)ref|XP_006365488.1|2e-68PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFN006G06Sequence624012476 (7)ref|XP_006365488.1|7e-71PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFS068F01Sequence537012476 (7)ref|XP_009803019.1|1e-47PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]
JMSF012G07Sequence244005021 (7)ref|XP_009803020.1|1e-24PREDICTED: long chain acyl-CoA synthetase 2 isoform X2 [Nicotiana sylvestris]720012476 (7)ref|XP_006365488.1|1e-110PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMSF024B02Sequence700022119gb|KEH40770.1|3e-14long-chain fatty acyl CoA ligase [Medicago truncatula]713012476 (7)ref|XP_006365488.1|5e-118PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS068F01- GATCTTGGCTAATTAAAGCCGACTCTGTTCTGT
                      ____________________________________________________________
consensus GATCTTGGCTAATTAAAGCCGACTCTGTTCTGT
 
. : . : . : . : . : . :
JMFS068F01- GGAGTGCCACCAGTTTATGACCCGGTATGCACATGCGCAAAGGATAATATATTGGCGTGG
                      ____________________________________________________________
consensus GGAGTGCCACCAGTTTATGACCCGGTATGCACATGCGCAAAGGATAATATATTGGCGTGG
 
. : . : . : . : . : . :
JMFS068F01- TGGCACGCGTGAAGAAACTACTTTGTCGACTATGCCTATAACTACAAATCGAAGAAATAG
                      ____________________________________________________________
consensus TGGCACGCGTGAAGAAACTACTTTGTCGACTATGCCTATAACTACAAATCGAAGAAATAG
 
. : . : . : . : . : . :
JMFS068F01- GGAAAAAGGGCTAAAGCACGATGAACCGGACCTTTTCTTGGACAGGCTGGGGTTTGACAA
                      ____________________________________________________________
consensus GGAAAAAGGGCTAAAGCACGATGAACCGGACCTTTTCTTGGACAGGCTGGGGTTTGACAA
 
. : . : . : . : . : . :
JMFS068F01- GATTAAACTAGCATTTGGTGGGCGAGTTCGGCTTATGCTATCTGGAGCCGCTCCCTTGCC
                      ____________________________________________________________
consensus GATTAAACTAGCATTTGGTGGGCGAGTTCGGCTTATGCTATCTGGAGCCGCTCCCTTGCC
 
. : . : . : . : . : . :
JMFS068F01- TATGCACGAGGAGGAGTTTCTGAGGGTGACGAGGGGCTGGGTTTAGTCGCAAGGATATGA
                      ____________________________________________________________
consensus TATGCACGAGGAGGAGTTTCTGAGGGTGACGAGGGGCTGGGTTTAGTCGCAAGGATATGA
 
. : . : . : . : . : . :
JMFS068F01- CCTTACTGAAAGCTGAGGGGGATGCTTCAAGTGCATTGCCAATGTGTTCCCGATGACAGG
                      ____________________________________________________________
consensus CCTTACTGAAAGCTGAGGGGGATGCTTCAAGTGCATTGCCAATGTGTTCCCGATGACAGG
 
. : . : . : . : . : . :
JMFS068F01- GACTGGAGGTGTGCCGATGACTACTATTGAGGCAAGACTTGAATCGGTGCCCGAGATGGG
                      ____________________________________________________________
consensus GACTGGAGGTGTGCCGATGACTACTATTGAGGCAAGACTTGAATCGGTGCCCGAGATGGG
 
. : . : . : . : . : . :
JMFS068F01- ATACGATGCACTTGGCACTGTACCCCGTGGTGAAATTTGTCTTCGGGGAAAGACATTGTT
rJMSF024B02+ GTGAAATTTGTCTTCGGGGAAAGACATTGTT
rJMSF012G07+ T
                      ____________________________________________________________
consensus ATACGATGCACTTGGCACTGTACCCCGTGGTGAAATTTGTCTTCGGGGAAAGACATTGTT
 
. : . : . : . : . : . :
JMFS068F01- TTCAGGGTCTCATAAGCGGGAAGA
rJMSF024B02+ TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
rJMSF012G07+ TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
rJMFF017E15+ GGATGGATGTTNTCA
                      ____________________________________________________________
consensus TTCAGGGTATCATAAGCGGGAAGATCTCACGAGAGACGTAGTAGTGGATGGATGGTTTCA
 
. : . : . : . : . : . :
rJMSF024B02+ TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMSF012G07+ TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMFF039F19+ CGATGGAGCAATGAAAATCATCGACAGGAAAAA
rJMFF017E15+ TACAGGNNATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
                      ____________________________________________________________
consensus TACAGGTGATATCGGGGAATGGCAGCCCGATGGAGCAATGAAAATCATCGACAGGAAAAA
 
. : . : . : . : . : . :
rJMSF024B02+ GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMSF012G07+ GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF039F19+ GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF017E15+ GAACATATTCAAG-TGTCTCAAGGGGAATACGTCGCTGTNGAAAGCCTGGAAAGCACTTA
JMFN006G06- CGTCGCTGTTGAAAGCCTGGAAAGCACTTA
rJMFF050A24+ AAGCCTGGAAAGCACTTA
                      ____________________________________________________________
consensus GAACATATTCAAGTTGTCTCAAGGGGAATACGTCGCTGTTGAAAGCCTGGAAAGCACTTA
 
. : . : . : . : . : . :
rJMSF024B02+ TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMSF012G07+ TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF039F19+ TTNTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF017E15+ TTGTAGCTGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
JMFN006G06- TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
rJMFF050A24+ TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
                      ____________________________________________________________
consensus TTCTAGATGCCCCCTCGTCGCAGCAGTTTGGGTGTATGGAAACAGCTTCGAATCGTTCCT
 
. : . : . : . : . : . :
rJMSF024B02+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMSF012G07+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF039F19+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF017E15+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
JMFN006G06- GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
rJMFF050A24+ GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
                      ____________________________________________________________
consensus GGTGGCCGTGGTGATTCCCGAGAGAAAGGCGCTCGAAGATTGGGCTCAAAACAATCGGGA
 
. : . : . : . : . : . :
rJMSF024B02+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMSF012G07+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF039F19+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF017E15+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
JMFN006G06- AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
rJMFF050A24+ AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
                      ____________________________________________________________
consensus AACCGGAGACTTCGTATCCCTGTGCAAGAATCAAAAGGCGAGGAAGTACATTCTTGATGA
 
. : . : . : . : . : . :
rJMSF024B02+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMSF012G07+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF039F19+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF017E15+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGCAATGTTACGAGCAGTCCA
JMFN006G06- GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
rJMFF050A24+ GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
                      ____________________________________________________________
consensus GTTAAACAACACCGGTAAAAAACACCAGCTACGAGGTTTTGAAATGTTACGAGCAGTCCA
 
. : . : . : . : . : . :
rJMSF024B02+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMSF012G07+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF039F19+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF017E15+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
JMFN006G06- CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
rJMFF050A24+ CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
                      ____________________________________________________________
consensus CTTGGAGCCAACGCCTTTCGACATCGAGAGGGATCTAGTTACCCCCACATTCAAGCTCAA
 
. : . : . : . : . : . :
rJMSF024B02+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMSF012G07+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF039F19+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF017E15+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
JMFN006G06- AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
rJMFF050A24+ AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
                      ____________________________________________________________
consensus AAGGCCACAGCTCCTCAACTATTACAAGGATTGCATCGATCAACTGTATAAAGAAGCAAA
 
. : . : . : . : . : . :
rJMSF024B02+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMSF012G07+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF039F19+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF017E15+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
JMFN006G06- GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
rJMFF050A24+ GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
                      ____________________________________________________________
consensus GAACGTCTCGGCCTAAAACCCGTCAAGACATGAGCCTGCTTGTTAATGTAGTGTTGATAA
 
. : . : . : . : . : . :
rJMSF024B02+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMSF012G07+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF039F19+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF017E15+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
JMFN006G06- CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
rJMFF050A24+ CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
                      ____________________________________________________________
consensus CAAGCAGATATTAGTATTGTTTCATACATCCAGTGAAGAAGATGATGATTATCTTCCTAT
 
. : . : . : . : . : . :
rJMSF024B02+ GTCTATATAAACTTCTGCGCTG
rJMSF012G07+ GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTC
rJMFF039F19+ GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
rJMFF017E15+ GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
JMFN006G06- GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
rJMFF050A24+ GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
                      ____________________________________________________________
consensus GTCTATATAAACTTCTGCGCTGTTATTATTTATATTCTGAAACCTTTCTGGGAATAAGAT
 
. : . : . : . : . : . :
rJMFF039F19+ AAAGAT
rJMFF017E15+ AAAGAT
JMFN006G06- AAAGATTGAAGCTTG
rJMFF050A24+ AAAGATTGAAGCTTGXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus AAAGATTGAAGCTTGNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG