clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF006B13 | Sequence | 501 | 010152 (7) | ref|XP_006375578.1| | 3e-26 | hypothetical protein POPTR_0014s167301g, partial [Populus trichocarpa] gb|ERP533 | 764 | 012468 (7) | ref|XP_009761216.1| | 2e-108 | PREDICTED: long chain acyl-CoA synthetase 8-like [Nicotiana sylvestris] |
JMFF013M16 | Sequence | 548 | 010152 (7) | ref|XP_006375578.1| | 1e-35 | hypothetical protein POPTR_0014s167301g, partial [Populus trichocarpa] gb|ERP533 | 776 | 012468 (7) | ref|XP_009761216.1| | 3e-117 | PREDICTED: long chain acyl-CoA synthetase 8-like [Nicotiana sylvestris] |
JMFF015D10 | Sequence | 556 | 010152 (7) | gb|ACF17664.1| | 2e-38 | putative long-chain acyl-CoA synthetase [Capsicum annuum] | 710 | 012468 (7) | ref|XP_009761216.1| | 1e-92 | PREDICTED: long chain acyl-CoA synthetase 8-like [Nicotiana sylvestris] |
JMFF035H09 | Sequence | 575 | 010152 (7) | gb|ACF17664.1| | 2e-39 | putative long-chain acyl-CoA synthetase [Capsicum annuum] | 725 | 012468 (7) | ref|XP_009761216.1| | 3e-103 | PREDICTED: long chain acyl-CoA synthetase 8-like [Nicotiana sylvestris] |
JMFF049F08 | Sequence | 642 | 010152 (7) | gb|ACF17664.1| | 5e-49 | putative long-chain acyl-CoA synthetase [Capsicum annuum] | 594 | 012468 (7) | ref|XP_009761216.1| | 3e-53 | PREDICTED: long chain acyl-CoA synthetase 8-like [Nicotiana sylvestris] |
JMFN029F03 | Sequence | 601 | 012468 (7) | ref|XP_009761216.1| | 1e-73 | PREDICTED: long chain acyl-CoA synthetase 8-like [Nicotiana sylvestris] | |||||
JMSF007A20 | Sequence | 317 | 010152 (7) | 777 | 012468 (7) | ref|XP_009761216.1| | 3e-104 | PREDICTED: long chain acyl-CoA synthetase 8-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF013M16+ AGGAGAAGTTGTTGTTGG
____________________________________________________________
consensus AGGAGAAGTTGTTGTTGG
. : . : . : . : . : . :
rJMFF035H09+ CTTCAATAATGAAGTGAAAACTAATGAGGGTGTACA
rJMFF013M16+ TGGATGCAGTGTTACNTCTGGCTACTTCAATAATGAAGTGAAAACTAATGA-GGTGTACA
rJMFF006B13+ CTTCAATAATGAAGTGAAAACTAATGA-GGTGTACA
rJMSF007A20+ GGTGTACA
____________________________________________________________
consensus TGGATGCAGTGTTACNTCTGGCTACTTCAATAATGAAGTGAAAACTAATGA-GGTGTACA
. : . : . : . : . : . :
rJMFF035H09+ AAGTTGATGAAAGGGGTATGCGATGGTTTTACACTGGTGATATTGGAATGTTTCATCCTG
rJMFF013M16+ AAGTTGATGAAAGGGGTATGCGATGGTTTTACACTGGTGATATTGGAATGTTTCATCCTG
rJMFF006B13+ AAGTTGATGAAAGGGGTATGCGATGGTTTTACACTGGTGATATTGGGATGTTTCATCCTG
rJMFF015D10+ TTTACACTGGTGATATTGGAATGTTTCATCCTG
rJMSF007A20+ AAGTTGATGAAAGGGGTATGCGATGGTTTTACACTGGTGATATTGGAATGTTTCATCCTG
____________________________________________________________
consensus AAGTTGATGAAAGGGGTATGCGATGGTTTTACACTGGTGATATTGGAATGTTTCATCCTG
. : . : . : . : . : . :
rJMFF035H09+ ATGGATGCCTTGAAATTATTGATAGAAAGAAGGATATTGTAAAACTTCAACATGGGGAGT
rJMFF013M16+ ATGGATGCCTTGAAATTATTGATAGAAAGAAGGATATTGTAAAACTTCAACATGGGGAGT
JMFN029F03- ACATGGGGAGT
rJMFF006B13+ ATGGATGCCTTGAAATTATTGATAGAAAGAAGGATATTGTAAAACTTCAACATGGGGAGT
rJMFF015D10+ ATGGATGCCTTGAAATTATTGATAGAAAGAAGGATATTGTAAAACTTCAACATGGGGAGT
rJMSF007A20+ ATGGATGCCTTGAAATTATTGATAGAAAGAAGGATATTGTAAAACTTCAACATGGGGAGT
____________________________________________________________
consensus ATGGATGCCTTGAAATTATTGATAGAAAGAAGGATATTGTAAAACTTCAACATGGGGAGT
. : . : . : . : . : . :
rJMFF035H09+ ACATCTCTCTTGGAAAGGTTGAGGCAGCACTTATGTCAAGCAATTATGTGGATAACATAA
rJMFF013M16+ ACATCTCTCTTGGAAAGGTTGAGGCAGCACTTATGTCAAGCAATTATGTGGATAACATAA
JMFN029F03- ACATCTCTCTTGGAAAGGTTGAGGCAGCACTTATGTCAAGCAATTATGTGGATAACATAA
rJMFF006B13+ ACATCTCTCTTGGAAAGGTTGAGGCAGCACTTATGTCAAGCAATTATGTGGATAACATAA
rJMFF015D10+ ACATCTCTCTTGGAAAGGTTGAGGCAGCACTTATGTCAAGCAATTATGTGGATAACATAA
rJMSF007A20+ ACATCTCTCTTGGAAAGGTTGAGGCAGCACTTATGTCAAGCAATTATGTGGATAACATAA
____________________________________________________________
consensus ACATCTCTCTTGGAAAGGTTGAGGCAGCACTTATGTCAAGCAATTATGTGGATAACATAA
. : . : . : . : . : . :
rJMFF035H09+ TGGTCTATGCTGATCCCTTTCACAATTATTGTGTAGCTCTAGTTGTTCCTTCACAGCAGA
rJMFF013M16+ TGGTCTATGCTGATCCCTTTCACAATTATTGTGTAGCTCTAGTTGTTCCTTCACAGCAGA
JMFN029F03- TGGTCTATGCTGATCCCTTTCACAATTATTGTGTAGCTCTAGTTGTTCCTTCACAGCAGA
rJMFF006B13+ TGGTCTATGCTGATCCCTTTCACAATTATTGTGTAGCTCTAGTTGTTCCTTCACAGCAGA
rJMFF015D10+ TGGTCTATGCTGATCCCTTTCACAATTATTGTGTAGCTCTAGTTGTTCCTTCACAGCAGA
rJMSF007A20+ TGGTCTATGCTGATCCCTTTCACAATTATTGTGTAGCTCTAGTTGTTCCTTCACAGCAGA
rJMFF049F08+ ATGCTGATCCCTTTCACAATTATTGTGTAGCTCTAGTTGTTCCTTCACAGCAGA
____________________________________________________________
consensus TGGTCTATGCTGATCCCTTTCACAATTATTGTGTAGCTCTAGTTGTTCCTTCACAGCAGA
. : . : . : . : . : . :
rJMFF035H09+ TCCTTGAGAAATGGGCACAGGAAAACAGTATAGAGTACAGAAATTTTTCTGAGTTGTGTG
rJMFF013M16+ TCCTTGAGAAATGGGCACAGGAAAACAGTATAGAGTACAGAAATTTTTCTGAGTTGTGTG
JMFN029F03- TCCTTGAGAAATGGGCACAGGAAAACAGTATAGAGTACAGAAATTTTTCTGAGTTGTGTG
rJMFF006B13+ TCCTTGAGAAATGGGCACAGGAAAACAGTATAGAGTACAGAAATTTTTCTGAGTTGTGTG
rJMFF015D10+ TCCTTGAGAAATGGGCACAGGAAAACAGTATAGAGTACAGAAATTTTTCTGAGTTGTGTG
rJMSF007A20+ TCCTTGAGAAATGGGCACAGGAAAACAGTATAGAGTACAGAAATTTTTCTGAGTTGTGTG
rJMFF049F08+ TCCTTGAGAAATGGGCACAGGAAAACAGTATAGAGTACAGAAATTTTTCTGAGTTGTGTG
____________________________________________________________
consensus TCCTTGAGAAATGGGCACAGGAAAACAGTATAGAGTACAGAAATTTTTCTGAGTTGTGTG
. : . : . : . : . : . :
rJMFF035H09+ ACAAAGCAGAAGCCATCAAAGAGGTTCAGCAAGCTCTATCTCAGGTAGCCAAAGCTGCAA
rJMFF013M16+ ACAAAGCAGAAGCCATCAAAGAGGTTCAGCAAGCTCTATCTCAGGTAGCCAAAGCTGCAA
JMFN029F03- ACAAAGCAGAAGCCATCAAAGAGGTTCAGCAAGCTCTATCTCAGGTAGCCAAAGCTGCAA
rJMFF006B13+ ACAAAGCAGAAGCCATCAAAGAGGTTCAGCAAGCTCTATCTCAGGTAGCCAAAGCTGCAA
rJMFF015D10+ ACAAAGCAGAAGCCATCAAAGAGGTTCAGCAAGCTCTATCTCAGGTAGCCAAAGCTGCAA
rJMSF007A20+ ACAAAGCAGAAGCCATCAAAGAGGTTCAGCAAGCTCTATCTCAGGTAGCCAAAGCTGCAA
rJMFF049F08+ ACAAAGCAGAAGCCATCAAAGAGGTTCAGCAAGCTCTATCTCAGGTAGCCAAAGCTGCAA
____________________________________________________________
consensus ACAAAGCAGAAGCCATCAAAGAGGTTCAGCAAGCTCTATCTCAGGTAGCCAAAGCTGCAA
. : . : . : . : . : . :
rJMFF035H09+ GATTGGACAAGTTTGAGACTCCTGCGAAGATTAAGCTAATACCAGAGCCATGGACTCCAG
rJMFF013M16+ GATTGGACAAGTTTGAGACTCCTGCGAAGATTAAGCTAATACCAGAGCCATGGACTCCAG
JMFN029F03- GATTGGACAAGTTTGAGACTCCTGCGAAGATTAAGCTAATACCAGAGCCATGGACTCCAG
rJMFF006B13+ GATTGGACAAGTTTGAGACTCCTGCGAAGATTAAGCTAATACCAGAGCCATGGACTCCAG
rJMFF015D10+ GATTGGACAAGTTTGAGACTCCTGCGAAGATTAAGCTAATACCAGAGCCATGGACTCCAG
rJMSF007A20+ GATTGGACAAGTTTGAGACTCCTGCGAAGATTAAGCTAATACCAGAGCCATGGACTCCAG
rJMFF049F08+ GATTGGACAAGTTTGAGACTCCTGCGAAGATTAAGCTAATACCAGAGCCATGGACTCCAG
____________________________________________________________
consensus GATTGGACAAGTTTGAGACTCCTGCGAAGATTAAGCTAATACCAGAGCCATGGACTCCAG
. : . : . : . : . : . :
rJMFF035H09+ AATCTGGATTAGTTACAGCAGCTCTTAAATTAAAGAGGGAGCCGATCAAGGCCCGGTTTA
rJMFF013M16+ AATCTGGATTAGTTACAGCAGCTCTTAAATTAAAGAGGGAGCCGATCAAGGCCCGGTTTA
JMFN029F03- AATCTGGATTAGTTACAGCAGCTCTTAAATTAAAGAGGGAGCCGATCAAGGCCCGGTTTA
rJMFF006B13+ AATCTGGATTAGTTACAGCAGCTCTTAAATTAAAGAGGGAGCCGATCAAGGCCCGGTTTA
rJMFF015D10+ AATCTGGATTAGTTACAGCAGCTCTTAAATTAAAGAGGGAGCCGATCAAGGCCCGGTTTA
rJMSF007A20+ AATCTGGATTAGTTACAGCAGCTCTTAAATTAAAGAGGGAGCCGATCAAGGCCCGGTTTA
rJMFF049F08+ AATCTGGATTAGTTACAGCAGCTCTTAAATTAAAGAGGGAGCCGATCAAGGCCCGGTTTA
____________________________________________________________
consensus AATCTGGATTAGTTACAGCAGCTCTTAAATTAAAGAGGGAGCCGATCAAGGCCCGGTTTA
. : . : . : . : . : . :
rJMFF035H09+ AGGAGGAGCTTGATAAATTGTATAAATGATGAGTCAACTTTCTTTAATCTGATTCGCTTT
rJMFF013M16+ AGGAGGAGCTTGATAAATTGTATAAATTATGAGTCAACTTTCTTTAATCTGATTCGCTTT
JMFN029F03- AGGAGGAGCTTGATAAATTGTATAAATGATGAGTCAACTTTCTTTAATCTGATTCGCTTT
rJMFF006B13+ AGGAGGAGCTTGATAAATTGTATAAATGATGAGTCAACTTTCTTTAATCTGATTCGCTTT
rJMFF015D10+ AGGAGGAGCTTGATAAATTGTATAAATGATGAGTCAACTTTCTTTAATCTGATTCGCTTT
rJMSF007A20+ AGGAGGAGCTTGATAAATTGTATAAATGATGAGTCAACTTTCTTTAATCTGATTCGCTTT
rJMFF049F08+ AGGAGGAGCTTGATAAATTGTATAAATGATGAGTCAACTTTCTTTAATCTGATTCGCTTT
____________________________________________________________
consensus AGGAGGAGCTTGATAAATTGTATAAATGATGAGTCAACTTTCTTTAATCTGATTCGCTTT
. : . : . : . : . : . :
rJMFF035H09+ AAGCTCATCAGTATGGCTCCATGTTCTTCCTTCGGAATCAGCATTATCAATTTATGTCTC
rJMFF013M16+ AAGCTCATCAGTATGGCTCCATGTTCTTCCTTCGGAATCAGCATTATCAATTTATGTCTC
JMFN029F03- AAGCTCATCAGTATGGCTCCATGTTCTTCCTTCGGAATCAGCATTATCAATTTATGTCTC
rJMFF006B13+ AAGCTCATCAGTATGGCTCCATGTTCTTCCTTCGGAATCAGCATTATCAATTTATGTCTC
rJMFF015D10+ AAGCTCATCAGTATGGCTCCATGTTCTTCCTTCGGAATCAGCATTATCAATTTATGTCTC
rJMSF007A20+ AAGCTCATCAGTATGGCTCCATGTTCTTCCTTCGGAATCAGCATTATCAATTTATGTCTC
rJMFF049F08+ AAGCTCATCAGTATGGCTCCATGTTCTTCCTTCGGAATCAGCATTATCAATTTATGTCTC
____________________________________________________________
consensus AAGCTCATCAGTATGGCTCCATGTTCTTCCTTCGGAATCAGCATTATCAATTTATGTCTC
. : . : . : . : . : . :
rJMFF035H09+ AGACTCCTGCCACAGTTTCTTTGTATTCTCCATGAAATGCTGAGCGTGTAATAATTTTCT
rJMFF013M16+ AGACTCCTGCCACAGTTTCTTTGTATTCTCCATGAAATGCTGAGCGTGTAATAATTTTCT
JMFN029F03- AGACTCCTGCCACAGTTTCTTTGTATTCTCCATGAAATGCTGAGCGTGTAATAATTTTCT
rJMFF006B13+ AGACTCCTGCCACAGTTTCTTTGTATTCTCCATGAAATGCTGAGCGTGTAATAATTTTCT
rJMFF015D10+ AGACTCCTGCCACAGTTTCTTTGTATTCTCCATGAAATGCTGAGCGTGTAATAATTTTCT
rJMSF007A20+ AGACTCCTGCCACAGTTTCTTTGTATTCTCCATGAAATGCTGAGCGTGTAATAATTTTCT
rJMFF049F08+ AGACTCCTGCCACAGTTTCTTTGTATTCTCCATGAAATGCTGAGCGTGTAATAATTTTCT
____________________________________________________________
consensus AGACTCCTGCCACAGTTTCTTTGTATTCTCCATGAAATGCTGAGCGTGTAATAATTTTCT
. : . : . : . : . : . :
rJMFF035H09+ GCTGCGAGTACTTCCATTCCTATTTCT
rJMFF013M16+ GCTGCGAGTACTTCCATTCCTATTTCTTGCGTTGTATAT
JMFN029F03- GCTGCGAGTACTTCCATTCCTATTTCTTGC
rJMFF006B13+ GCTGCGAGTACTTCCATTCCTATTTCTTGCGTTGTATATATTCATTTTATGTCGGTACAC
rJMFF015D10+ GCTGCGAGTACTTCCATTCCTATTTCTTGCGTTGTATATATTCATTTTATGTCGGTACAC
rJMSF007A20+ GCTGCGAGTACTTCCATTCCTATTTCTTGCGTTGTATATATTCATTTTATGTCGGTACAC
rJMFF049F08+ GCTGCGAGTACTTCCATTCCTATTTCTTGCGTTGTATATATTCATTTTATGTCGGTACAC
____________________________________________________________
consensus GCTGCGAGTACTTCCATTCCTATTTCTTGCGTTGTATATATTCATTTTATGTCGGTACAC
. : . : . : . : . : . :
rJMFF006B13+ CTTTACATT
rJMFF015D10+ CTTTACATTTGGATTAT
rJMSF007A20+ CTTTACATTTGGATTATGGAGAATGCTCATTTCA
rJMFF049F08+ CTTTACATTTGGATTATGGAGAATGCTCATTTCAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus CTTTACATTTGGATTATGGAGAATGCTCATTTCAAAAAAAAAAAAAAAACTCTCCAGGGT