Contig 012466:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010F03Sequence507009421 (5)ref|XP_004230290.2|148PREDICTED: uncharacterized protein LOC101243829 [Solanum lycopersicum]634012466 (5)ref|XP_009757553.1|179PREDICTED: uncharacterized protein LOC104210359 [Nicotiana sylvestris]
JMFF013F09Sequence506009421 (5)ref|XP_004230290.2|148PREDICTED: uncharacterized protein LOC101243829 [Solanum lycopersicum]650012466 (5)ref|XP_009757553.1|150PREDICTED: uncharacterized protein LOC104210359 [Nicotiana sylvestris]
JMFF048O15Sequence529009421 (5)ref|XP_004230290.2|150PREDICTED: uncharacterized protein LOC101243829 [Solanum lycopersicum]532012466 (5)ref|XP_009757553.1|136PREDICTED: uncharacterized protein LOC104210359 [Nicotiana sylvestris]
JMFN020J09Sequence554012466 (5)emb|CDP18228.1|3e-13unnamed protein product [Coffea canephora]
JMSF031N04Sequence598009421 (5)ref|XP_004230290.2|150PREDICTED: uncharacterized protein LOC101243829 [Solanum lycopersicum]674012466 (5)ref|XP_009757553.1|189PREDICTED: uncharacterized protein LOC104210359 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF031N04+                                                                    TC
rJMFF013F09+                                                                  CTTC
                      ____________________________________________________________
consensus                                                                     CTTC
 
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rJMFF010F03+                                    TGTTCTTAAAGGAGTTTCTCTACAGAAGCAAGAG
rJMSF031N04+          TGTCGGGAGGAGCTCCAAGAGATGGGTGTTCTTAAAGGAGTTTCTCTACAGAAGCAAGAG
rJMFF013F09+          TGTCGGGAGGAGCTCCAAGAGATGGGTGTTCTTAAAGGAGTTTCTNTACAGAAGCAAGAG
                      ____________________________________________________________
consensus             TGTCGGGAGGAGCTCCAAGAGATGGGTGTTCTTAAAGGAGTTTCTCTACAGAAGCAAGAG
 
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rJMFF010F03+          CGAAGGCAGGAACAAT-CCCCACAAGTTCTGGGGAGCTTTATCGTTTTCTCCAGTGAAGG
rJMSF031N04+          CGAAGGCAGGAACAAT-CCCCACAAGTTCTGGGGAGCTTTATCGTTTTCTCCAGTGAAGG
rJMFF013F09+          CGAAGGCAGGAACAATCCCCCACAAGTTCTGGGGAGCTTTATCGTTTTCTCCAGTGAAGG
                      ____________________________________________________________
consensus             CGAAGGCAGGAACAAT-CCCCACAAGTTCTGGGGAGCTTTATCGTTTTCTCCAGTGAAGG
 
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rJMFF010F03+          AGAAGAAAATGGGAGGAGCCATTAAAACTCCTCCACCCAGCGCCGCCGCCGCCGCGGATG
rJMSF031N04+          AGAAGAAAATGGGAGGAGCCATTAAAACTCCTCCACCCAGCGCCGCCGCCGCCGCGGATG
rJMFF013F09+          AGAAGAAAATGGGAGGAGCCATTAAAACTCCTCCACCCAGCGCCGCCGCCGCCGCGGATG
                      ____________________________________________________________
consensus             AGAAGAAAATGGGAGGAGCCATTAAAACTCCTCCACCCAGCGCCGCCGCCGCCGCGGATG
 
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rJMFF010F03+          CGCCGGCGACCAGCACCGTCGCTTCAGATGTGAAGAAACCAAAACCTGCGAAAGAGGCGA
rJMSF031N04+          CGCCGGCGACCAGCACCGTCGCTTCAGATGTGAAGAAACCAAAACCCGCGAAAGAGGCGA
rJMFF013F09+          CGCCGGCGACCAGCACCGTCGCTTCAGATGTGAAGAAACCAAAACCTGCGAAAGAGGCGA
rJMFF048O15+                 GACCAGCACCGTCGCTTCAGATGTGAAGAAACCAAAACCTGCGAAAGAGGCGA
                      ____________________________________________________________
consensus             CGCCGGCGACCAGCACCGTCGCTTCAGATGTGAAGAAACCAAAACCTGCGAAAGAGGCGA
 
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rJMFF010F03+          GGAAGAAACCGGTGAACGGAAACTCAGCCGCCACCGGGAAAAGGAGGGTGCCGCCGTCGC
rJMSF031N04+          GGAAGAAACCGGTGAACGGAAACTCAGCCGCCACCGGGAAAAGGAGGGTGCCGCCGTCGC
rJMFF013F09+          GGAAGAAACCGGTGAACGGAAACTCAGCCGCCACCGGGAAAAGGAGGGTGCCGCCGTCGC
rJMFF048O15+          GGAAGAAACCGGTGAACGGAAACTCAGCCGCCACCGGGAAAAGGAGGGTGCCGCCGTCGC
                      ____________________________________________________________
consensus             GGAAGAAACCGGTGAACGGAAACTCAGCCGCCACCGGGAAAAGGAGGGTGCCGCCGTCGC
 
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rJMFF010F03+          CTCACGAGCTGCATTACACGGCGAATCGGGCGCAGGCGGAGGAGATGAGGAAGAAGACAT
rJMSF031N04+          CTCACGAGCTGCATTACACGGCGAATCGGGCGCAGGCGGAGGAGATGAGGAAGAAGACAT
JMFN020J09-                 AGCTGCATTACGCGGCGAATCGGGCGCAGGCGGAGGAGATGAGGAATAAGACCT
rJMFF013F09+          CTCACGAGCTGCATTACACGGCGAATCGGGCGCAGGCGGAGGAGATGAGGAAGAAGACAT
rJMFF048O15+          CTCACGAGCTGCATTACACGGCGAATCGGGCGCAGGCGGAGGAGATGAGGAAGAAGACAT
                      ____________________________________________________________
consensus             CTCACGAGCTGCATTACACGGCGAATCGGGCGCAGGCGGAGGAGATGAGGAAGAAGACAT
 
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rJMFF010F03+          TCTTGCCGTACCGGCAAG-GCTTGCTGGGTTGCTTGGGGTTTAGCTCAAAGAGTTATGGA
rJMSF031N04+          TCTTGCCGTACCGGCAAG-GCTTGCTGGGTTGCTTGGGGTTTAGCTCAAAGAGTTATGGA
JMFN020J09-           TCTTGCCGAACCGGCAAGAGCTTGCTGGGGTGCTTGAGGATTAGGTCAAAGAGTTATGGA
rJMFF013F09+          TCTTGCCGTACCGGCAAG-GCTTGCTGGGTTGCTTGGGGTTTAGCTCAAAGAGTTATGGA
rJMFF048O15+          TCTTGCCGTACCGGCAAG-GCTTGCTGGGTTGCTTGGGGTTTAGCTCAAAGAGTTATGGA
                      ____________________________________________________________
consensus             TCTTGCCGTACCGGCAAG-GCTTGCTGGGTTGCTTGGGGTTTAGCTCAAAGAGTTATGGA
 
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rJMFF010F03+          GCCATGAACGGTCTCGCTAGAGCATTGAACCCCGTCTCTTCAAGGTAAACTTGTAAAGTA
rJMSF031N04+          GCCATGAACGGTCTCGCTAGAGCATTGAACCCCGTCTCTTCAAGGTAAACTTGTAAAGTA
JMFN020J09-           CCCACGAACGGCCTCTGTAGAGCATTGAACCCCGTCTATTCAAGGGAAACCAGCCAAGTA
rJMFF013F09+          GCCATGAACGGTCTCGCTAGAGCATTGAACCCCGTCTCTTCAAGGTAAACTTGTAAAGTA
rJMFF048O15+          GCCATGAACGGTCTCGCTAGAGCATTGAACCCCGTCTCTTCAAGGTAAACTTGTAAAGTA
                      ____________________________________________________________
consensus             GCCATGAACGGTCTCGCTAGAGCATTGAACCCCGTCTCTTCAAGGTAAACTTGTAAAGTA
 
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rJMFF010F03+          AATCTAAAAGATTACCACTATTAATGTATAGAGAGATTTTTCACCTT             
rJMSF031N04+          AATCTAAAAGATTACCACTATTAATGTATAGAGAGATTTTTCACCTT             
JMFN020J09-           AATGTAAAAGAATACCACTATTAGTGGATAGAGAGACTTGTCACCTT             
rJMFF013F09+          AATCTAAAAGATTACCACTATTAATGTATAGAGAGATTTTTCACCTTCCTTTATTTCATT
rJMFF048O15+          AATCTAAAAGATTACCACTATTAATGTATAGAGAGATTTTTCACCTTCCTTTATTTCATT
                      ____________________________________________________________
consensus             AATCTAAAAGATTACCACTATTAATGTATAGAGAGATTTTTCACCTTCCTTTATTTCATT
 
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rJMFF013F09+          TTTCTTGCTTTTGGTAATGTTTTCCAGTGATTGTGATGTCTATTTTAAGATGTACCAACT
rJMFF048O15+          TTTCTTGCTTTTGGTAATGTTTTCCAGTGATTGTGATGTCTATTTTAAGATGTACCAACT
                      ____________________________________________________________
consensus             TTTCTTGCTTTTGGTAATGTTTTCCAGTGATTGTGATGTCTATTTTAAGATGTACCAACT
 
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rJMFF013F09+          GATGGGAACTTCTCTTTAGA-TGGAAAGAGAAGTTTTCGATCCATCTG            
rJMFF048O15+          GATGGGAACTTCTCTTTAGATTGGAAAGAGAAGTTTTCGATCCATCTGCTTAATCATGGA
                      ____________________________________________________________
consensus             GATGGGAACTTCTCTTTAGATTGGAAAGAGAAGTTTTCGATCCATCTGCTTAATCATGGA
 
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rJMFF048O15+          TTTGGTTTAGTACTTGTGTAGCCATTCATGGAAATCTATGAAATTTCTTGAATCCTTATT
                      ____________________________________________________________
consensus             TTTGGTTTAGTACTTGTGTAGCCATTCATGGAAATCTATGAAATTTCTTGAATCCTTATT