Contig 012464:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021B20Sequence505012906 (4)ref|XP_009122341.1|4e-28PREDICTED: pectinesterase PPME1 [Brassica rapa] gb|AGX13882.1| pectin methyleste733012464 (3)ref|XP_011076543.1|2e-24PREDICTED: pectinesterase 1-like [Sesamum indicum]
JMFF029H08Sequence448012906 (4)ref|XP_009122341.1|9e-28PREDICTED: pectinesterase PPME1 [Brassica rapa] gb|AGX13882.1| pectin methyleste746012464 (3)ref|XP_006365350.1|4e-66PREDICTED: pectinesterase 2-like [Solanum tuberosum]
JMFF048J17Sequence454012906 (4)ref|XP_009122341.1|2e-34PREDICTED: pectinesterase PPME1 [Brassica rapa] gb|AGX13882.1| pectin methyleste394012464 (3)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+                           TACAACTGTAAATTTTATGGATTCCAAGACACCCTTTGTGATA
                      ____________________________________________________________
consensus                              TACAACTGTAAATTTTATGGATTCCAAGACACCCTTTGTGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          ATATTANCAAACATTTCTATAAGGATTGTTACATTGAAGGCACGGTAGATTTCTTCTTTG
                      ____________________________________________________________
consensus             ATATTANCAAACATTTCTATAAGGATTGTTACATTGAAGGCACGGTAGATTTCTTCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          GCAGTGCCAAGAGTATCATTTTGAACACAGAACTGCATGTTATCCCAGGCGGGATGGCGT
                      ____________________________________________________________
consensus             GCAGTGCCAAGAGTATCATTTTGAACACAGAACTGCATGTTATCCCAGGCGGGATGGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          ATGTTACGGCACACGGTCGGAAAAGTGCAAAAGAAGACTCAGGATACTCTTTCGTACAAT
rJMFF021B20+                                                   GGATACTCTTTCGTACAAT
                      ____________________________________________________________
consensus             ATGTTACGGCACACGGTCGGAAAAGTGCAAAAGAAGACTCAGGATACTCTTTCGTACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          G-CCGAGTTACCGGGGATGCCAAATCTAGGATTGCAGTACTAGGAAGAGCATGGTATCCT
rJMFF021B20+          GCCCGAGTTACCGGGGATGCCAAATCTAGGATTGCAGTACTAGGAAGAGCATGGTATCCT
                      ____________________________________________________________
consensus             GCCCGAGTTACCGGGGATGCCAAATCTAGGATTGCAGTACTAGGAAGAGCATGGTATCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          TTTGCTAAGGTCGTATTTATCTATTCTGATATTTGTGGCGCCATTAGACCGGAGGGATGG
rJMFF021B20+          TTTGCTAAGGTCGTATTTATCTATTCTGATATTTGTGGCGCCATTAGACCGGAGGGATGG
                      ____________________________________________________________
consensus             TTTGCTAAGGTCGTATTTATCTATTCTGATATTTGTGGCGCCATTAGACCGGAGGGATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          TTTGGGGTGCACAACAGTCTTACCGATGGAGAGACGACATACTTTGGAGAGTACAAGAAT
rJMFF021B20+          TTTGGGGTGCACAACAGTCTTACCGATGGAGAGACGACATACTTTGGAGAGTACAAGAAT
                      ____________________________________________________________
consensus             TTTGGGGTGCACAACAGTCTTACCGATGGAGAGACGACATACTTTGGAGAGTACAAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          ACAGGGGCAGGATCTGACATGGCTAAACGTCCCAAGTTCGTTAAGAGGCTGACAGATGCA
rJMFF021B20+          ACAGGGGCAGGATCTGACATGGCTAAACGTCCCAAGTTCGTTAAGAGGCTGACAGATGCA
                      ____________________________________________________________
consensus             ACAGGGGCAGGATCTGACATGGCTAAACGTCCCAAGTTCGTTAAGAGGCTGACAGATGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          GAAGCGAAGCCATTCATCACCCTGGCTTTCATAGAGGCTTCCAAGTGGTTGCTTCCCCCA
rJMFF021B20+          GAAGCGAAGCCATTCATCACCCTGGCTTTCATAGAGGCTTCCAAGTGGTTGCTTCCCCCA
                      ____________________________________________________________
consensus             GAAGCGAAGCCATTCATCACCCTGGCTTTCATAGAGGCTTCCAAGTGGTTGCTTCCCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          ATCACCAAAGCTGTTCAAGTCAATTCAACCTAATTCAGATCAAGGTTAAATTAAAAGAAA
rJMFF021B20+          ATCACCAAAGCTGTTCAAGTCAATTCAACCTAATTCAGATCAAGGTTAAATTAAAAGAAA
rJMFF048J17+                                    AACCTAATTCAGATCAAGGTTAAATTAAAAGAAA
                      ____________________________________________________________
consensus             ATCACCAAAGCTGTTCAAGTCAATTCAACCTAATTCAGATCAAGGTTAAATTAAAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029H08+          ACAAACTGCGAACTCAAGCCTAGCATATGTACTTTACGATGATC                
rJMFF021B20+          ACAAACTGCGAACTCAAGCCTAGCATATGTACTTTACGATGATCGCAAGCATGCAATACA
rJMFF048J17+          ACAAACTGCGAACTCAAGCCTAGCATATGTACTTTACGATGATCGCAAGCATGCAATACA
                      ____________________________________________________________
consensus             ACAAACTGCGAACTCAAGCCTAGCATATGTACTTTACGATGATCGCAAGCATGCAATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021B20+          TGTGGTCGTTGTTTGTTTGGTTTAGGTGGTTAGGGGGGCTGCTCCCTTGGCTTATATTTC
rJMFF048J17+          TGTGGTCGTTGTTTGTTTGGTTTAGGTGGTTAGGGGGGCTGCTCCCTTGGCTTATATTTC
                      ____________________________________________________________
consensus             TGTGGTCGTTGTTTGTTTGGTTTAGGTGGTTAGGGGGGCTGCTCCCTTGGCTTATATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021B20+          AGCGCTTACGACATGTACTGCATGGCTCACTTATTCATCATCAATACATTCTCGTCTTCT
rJMFF048J17+          AGCGCTTACGACATGTACTGCATGGCTCACTTATTCATCATCAATACATTCTCGTCTTCT
                      ____________________________________________________________
consensus             AGCGCTTACGACATGTACTGCATGGCTCACTTATTCATCATCAATACATTCTCGTCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021B20+          TCTCTTTTTTTCCCTCCATGGATACTCTACAAAAAACTGTTCTACAATTAATTATGTCCA
rJMFF048J17+          TCTCTTTTTTTCCCTCCATGGATACTCTACAAAAAACTGTTCTACAATTAATTATGTCCA
                      ____________________________________________________________
consensus             TCTCTTTTTTTCCCTCCATGGATACTCTACAAAAAACTGTTCTACAATTAATTATGTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021B20+          GATTAATTGGTATGAGGATTGTTTATTTTTAATATCAGGATTGTTTATTTTTTGACCACT
rJMFF048J17+          GATTAATTGGTATGAGGATTGTTTATTTTTAATATCAGGATTGTTTATTTTTTGACCACT
                      ____________________________________________________________
consensus             GATTAATTGGTATGAGGATTGTTTATTTTTAATATCAGGATTGTTTATTTTTTGACCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021B20+          TGTCTAAATTCGTCATAAAAGT                                      
rJMFF048J17+          TGTCTAAATTCGTCATAAAAGTTGAAAAATCTATAAATATTCATTCAATTGTTTACATCT
                      ____________________________________________________________
consensus             TGTCTAAATTCGTCATAAAAGTTGAAAAATCTATAAATATTCATTCAATTGTTTACATCT