| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005D08 | Sequence | 363 | 010638 (8) | 731 | 012463 (10) | gb|KJB69528.1| | 2e-89 | hypothetical protein B456_011G028300 [Gossypium raimondii] | |||
| JMFF015I04 | Sequence | 491 | 023700 | 663 | 012463 (10) | gb|KHG11946.1| | 3e-55 | Serine/threonine-protein kinase HT1 [Gossypium arboreum] | |||
| JMFF022P03 | Sequence | 719 | 012463 (10) | gb|KJB69528.1| | 1e-86 | hypothetical protein B456_011G028300 [Gossypium raimondii] | |||||
| JMFF026P24 | Sequence | 498 | 010638 (8) | 735 | 012463 (10) | gb|KJB69528.1| | 3e-89 | hypothetical protein B456_011G028300 [Gossypium raimondii] | |||
| JMFF029H22 | Sequence | 501 | 010638 (8) | 730 | 012463 (10) | gb|KJB69528.1| | 2e-89 | hypothetical protein B456_011G028300 [Gossypium raimondii] | |||
| JMFF041C22 | Sequence | 634 | 010638 (8) | ref|XP_006347030.1| | 4e-04 | PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Solanum tuberos | 619 | 012463 (10) | ref|XP_008383730.1| | 6e-21 | PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica] |
| JMFF042G06 | Sequence | 648 | 010638 (8) | ref|XP_009595039.1| | 2e-06 | PREDICTED: serine/threonine-protein kinase HT1-like [Nicotiana tomentosiformis] | 597 | 012463 (10) | ref|XP_010647093.1| | 5e-51 | PREDICTED: serine/threonine-protein kinase HT1 [Vitis vinifera] emb|CAN83589.1| |
| JMFF046O21 | Sequence | 644 | 010638 (8) | ref|XP_009595039.1| | 2e-06 | PREDICTED: serine/threonine-protein kinase HT1-like [Nicotiana tomentosiformis] | 544 | 012463 (10) | gb|KJB69528.1| | 0.001 | hypothetical protein B456_011G028300 [Gossypium raimondii] |
| JMFF048I01 | Sequence | 492 | 010638 (8) | 574 | 012463 (10) | ||||||
| JMSF016A21 | Sequence | 445 | 010638 (8) | 753 | 012463 (10) | gb|KJB69528.1| | 9e-86 | hypothetical protein B456_011G028300 [Gossypium raimondii] | |||
This contig is upended
. : . : . : . : . : . :
rJMFF022P03+ CCTGAAAATTGCTGATTTTGGTATAGCTTGTGAAGAGGCATATTGTGATC
rJMFF029H22+ GCTGATTTTGGTATAGCTTGTGAAGAGGCATATTGTGATC
rJMFF026P24+ GCTGATTTTGGTATAGCTTGTGAAGAGGCATATTGTGATC
rJMFF005D08+ GCTGATTTTGGTATAGCTTGTGAAGAGGCATATTGTGATC
rJMSF016A21+ TGAAAATTGCTGATTTTGGTATAGCTTGTGAAGAGGCATATTGTGATC
____________________________________________________________
consensus CCTGAAAATTGCTGATTTTGGTATAGCTTGTGAAGAGGCATATTGTGATC
. : . : . : . : . : . :
rJMFF022P03+ CTCTAGCGGATGACCCTGGTACGTATCGTTGGATGGCTCCNGAGATGATCAAGCGCAAGC
rJMFF029H22+ CTCTAGCGGATGACCCTGGTACGTATCGTTGGATGGCTCCCGAGATGATCAAGCGCAAGC
rJMFF015I04+ TGACCCTGGTACGTATCGTTGGATGGCTCCCGAGATGATCAAGCGCAAGC
rJMFF026P24+ CTCTAGCGGATGACCCTGGTACGTATCGTTGGATGGCTCCCGAGATGATCAAGCGCAAGC
rJMFF005D08+ CTCTAGCGGATGACCCTGGTACGTATCGTTGGATGGCTCCCGAGATGATCAAGCGCAAGC
rJMSF016A21+ CTCTAGCGGATGACCCTGGTACGTATCGTTGGATGGCTCCCGAGATGATCAAGCGCAAGC
____________________________________________________________
consensus CTCTAGCGGATGACCCTGGTACGTATCGTTGGATGGCTCCCGAGATGATCAAGCGCAAGC
. : . : . : . : . : . :
rJMFF022P03+ CCTATGGTCGGAAGGTTGATGTGTACGGATTTGGACTCATTTTATGGGAATTGGTGACCG
rJMFF029H22+ CCTATGGTCGGAAGGTTGATGTGTACGGATTTGGACTCATTTTATGGGAATTGGTGACCG
rJMFF015I04+ CCTATGGTCGGAAGGTTGATGTGTACGGATTTGGACTCATTTTATGGGAATTGGTGACCG
rJMFF026P24+ CCTATGGTCGGAAGGTTGATGTGTACGGATTTGGACTCATTTTATGGGAATTGGTGACCG
rJMFF005D08+ CCTATGGTCGGAAGGTTGATGTGTACGGATTTGGACTCATTTTATGGGAATTGGTGACCG
rJMFF042G06+ TGGACTCATTTTATGGGAATTGGTGACCG
rJMSF016A21+ CCTATGGTCGGAAGGTTGATGTGTACGGATTTGGACTCATTTTATGGGAATTGGTGACCG
____________________________________________________________
consensus CCTATGGTCGGAAGGTTGATGTGTACGGATTTGGACTCATTTTATGGGAATTGGTGACCG
. : . : . : . : . : . :
rJMFF022P03+ GATCCATCCCCTATGAAGACATGACACCCGTGCAAGCTGCTTTCGCTGTGGTGAACAAGA
rJMFF029H22+ GATCCATCCCCTATGAAGACATGACACCCGTGCAAGCTGCTTTCGCTGTGGTGAACAAGA
rJMFF015I04+ GATCCATCCCCTATGAAGACATGACACCCGT-CAAGCTGCTTTCGCTGTGGTGAACAAGA
rJMFF026P24+ GATCCATCCCCTATGAAGACATGACACCCGTGCAAGCTGCTTTCGCTGTGGTGAACAAGA
rJMFF005D08+ GATCCATCCCCTATGAAGACATGACACCCGTGCAAGCTGCTTTCGCTGTGGTGAACAAGA
rJMFF042G06+ GATCCATCCCCTATGAAGACATGACACCCGTGCAAGCTGCTTTCGCTGTGGTGAACAAGA
rJMSF016A21+ GATCCATCCCCTATGAAGACATGACACCCGTGCAAGCTGCTTTCGCTGTGGTGAACAAGA
____________________________________________________________
consensus GATCCATCCCCTATGAAGACATGACACCCGTGCAAGCTGCTTTCGCTGTGGTGAACAAGA
. : . : . : . : . : . :
rJMFF022P03+ ATATGAGACCAACGGTACCTGTGGACTGCCCTCCCGCCATGAAAGCTTTGATCGAACAAT
rJMFF029H22+ ATATGAGACCAACGGTACCTGTGGACTGCCCTCCCGCCATGAAAGCTTTGATCGAACAAT
rJMFF015I04+ ATATGAGACCAACGGTACCTGTGGACTGCCCTCCCGCCATGAAAGCTTTGATCGAACAAT
rJMFF026P24+ ATATGAGACCAACGGTACCTGTGGACTGCCCTCCCGCCATGAAAGCTTTGATCGAACAAT
rJMFF005D08+ ATATGAGACCAACGGTACCTGTGGACTGCCCTCCCGCCATGAAAGCTTTGATCGAACAAT
rJMFF042G06+ ATATGAGACCAACGGTACCTGTGGACTGCCCTCCCGCCATGAAAGCTTTGATCGAACAAT
rJMSF016A21+ ATATGAGACCAACGGTACCTGTGGACTGCCCTCCCGCCATGAAAGCTTTGATCGAACAAT
rJMFF041C22+ TGATCGAACAAT
____________________________________________________________
consensus ATATGAGACCAACGGTACCTGTGGACTGCCCTCCCGCCATGAAAGCTTTGATCGAACAAT
. : . : . : . : . : . :
rJMFF022P03+ GTTGGTGTCTGCACCCTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
rJMFF029H22+ GTTGGTGTTTGCACCCTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
rJMFF015I04+ GTTGGTGTTTGCACCCTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
rJMFF026P24+ GTTGGTGTTTGCACCCTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
rJMFF005D08+ GTTGGTGTTTGCACCCTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
rJMFF042G06+ GTTGGTGTTTGCACCCTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
rJMSF016A21+ GTTGGTGTTTGCACCNTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
rJMFF041C22+ GTTGGTGTTTGCACCCTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
____________________________________________________________
consensus GTTGGTGTTTGCACCCTGAAAAGAGGCCCGAGTTCCCACAGATTGTGAAGTTGTTAGAGC
. : . : . : . : . : . :
rJMFF022P03+ AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMFF029H22+ AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMFF015I04+ AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMFF026P24+ AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMFF005D08+ AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMFF042G06+ AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMSF016A21+ AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMFF041C22+ AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMFF046O21+ TTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
rJMFF048I01+ GGAACTCTAGACAATCTAGTACCAAATTCAACAT
____________________________________________________________
consensus AGTTCGAGTCCTCACTTGCAGACAACGGAACTCTAGACAATCTAGTACCAAATTCAACAT
. : . : . : . : . : . :
rJMFF022P03+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMFF029H22+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMFF015I04+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMFF026P24+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMFF005D08+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMFF042G06+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMSF016A21+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMFF041C22+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMFF046O21+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
rJMFF048I01+ TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
____________________________________________________________
consensus TTCAAGATCACAAAAAGGGGCGCCTTCTCCACAGGATCCAAAAACTTGGCCCAACACAGT
. : . : . : . : . : . :
rJMFF022P03+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMFF029H22+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMFF015I04+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMFF026P24+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMFF005D08+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMFF042G06+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMSF016A21+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMFF041C22+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMFF046O21+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
rJMFF048I01+ CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
____________________________________________________________
consensus CAAACACCTCGACTATGCCTAAACCGAAGTTTCCATAGCTTCTGTAGTTTCTCCAGGCCC
. : . : . : . : . : . :
rJMFF022P03+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
rJMFF029H22+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
rJMFF015I04+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
rJMFF026P24+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
rJMFF005D08+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
rJMFF042G06+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
rJMSF016A21+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
rJMFF041C22+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
rJMFF046O21+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCNTGCGTCGTTTG
rJMFF048I01+ CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
____________________________________________________________
consensus CCGTGAAATCAAAAGGGTTCGACTCTTAGCATTTGGTTGTGTCTTAGCTTGCGTCGTTTG
. : . : . : . : . : . :
rJMFF022P03+ TGAATGTTAGGTCATACAGGTAAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMFF029H22+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMFF015I04+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMFF026P24+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMFF005D08+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMFF042G06+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMSF016A21+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMFF041C22+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMFF046O21+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
rJMFF048I01+ TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
____________________________________________________________
consensus TGAATGTTAGGTCATACAGGTGAATGTTCTTGTAATTTTGGATGGTAGATGCAAAAACAG
. : . : . : . : . : . :
rJMFF022P03+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMFF029H22+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMFF015I04+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMFF026P24+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMFF005D08+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMFF042G06+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMSF016A21+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMFF041C22+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMFF046O21+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
rJMFF048I01+ TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
____________________________________________________________
consensus TTGTCGTTTCATTTTGAGCATGACTGTAAATGTCTGCTAGGCTAGGCGTTGCTTGATTTA
. : . : . : . : . : . :
rJMFF022P03+ AATAAACTC
rJMFF029H22+ AATAAACTC
rJMFF015I04+ AATAAACTCCAGAT
rJMFF026P24+ AATAAACTCCAGAT
rJMFF005D08+ AATAAACTC
rJMFF042G06+ AATAAACTCCAGATTATATGGTGTTCCT
rJMSF016A21+ AATAAACTCCAGATTATATGGTGTTCCTAATT
rJMFF041C22+ AATAAACTCCAGATTATATGGTGTTCCTAATTTGGTAGCCCATAGTGTTTCTGTGTTATG
rJMFF046O21+ AATAAACTCCAGATTATATGGTGTTCCTAATTTGGTAGCCCATAGTGTTTCTGTGTTATG
rJMFF048I01+ AATAAACTCCAGATTATATGGTGTTCCTAATTTGGTAGCCCATAGTGTTTCTGTGTTATG
____________________________________________________________
consensus AATAAACTCCAGATTATATGGTGTTCCTAATTTGGTAGCCCATAGTGTTTCTGTGTTATG
. : . : . : . : . : . :
rJMFF041C22+ ATTGCTACTGGACATGGCGGCCAACTTCTAAATTTTGCGCAGGTTGTAGTCTTGTAGATG
rJMFF046O21+ ATTGCTACTGGACATGGCGGCCAACTTCTAAATTTTGCGCAGGTTGTAGTCTNGTAGATG
rJMFF048I01+ ATTGCTACTGGACATGGCGGCCAACTTCTAAATTTTGCGCAGGTTGTAGTCTTGTAGATG
____________________________________________________________
consensus ATTGCTACTGGACATGGCGGCCAACTTCTAAATTTTGCGCAGGTTGTAGTCTTGTAGATG
. : . : . : . : . : . :
rJMFF041C22+ ATATATGATGTAATAAAGGGTATATAACAGTTTGCAATACTCATTCTGAATGATAATGAA
rJMFF046O21+ ATATATGATGTAATAAAGGGTATATAACAGTTTGCAATACTCATTCTGAATGATAATGAA
rJMFF048I01+ ATATATGATGTAATAAAGGGTATATAACAGTTTGCAATACTCATTCTGAATGATAATGAA
____________________________________________________________
consensus ATATATGATGTAATAAAGGGTATATAACAGTTTGCAATACTCATTCTGAATGATAATGAA
. : . : . : . : . : . :
rJMFF041C22+ CTTGAGG
rJMFF046O21+ CTTGAGGAACGATGGTGCC
rJMFF048I01+ CTTGAGGAACGATGGTGCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus CTTGAGGAACGATGGTGCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG