Contig 012455:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014M14Sequence568023697ref|XP_009760074.1|5e-79PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Nicotiana sylvestris]674012455 (2)ref|XP_002267438.1|2e-96PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Vitis vinifera]
JMFF046L10Sequence518022780ref|XP_009760074.1|9e-75PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Nicotiana sylvestris]459012455 (2)emb|CAN82979.1|4e-55hypothetical protein VITISV_023329 [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+                                                                   GAA
                      ____________________________________________________________
consensus                                                                      GAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          TCTCGAGCTTTCGCAGTAATGCTTCTAAAATCAATCCTCAAAGTCGCGGAGCCATTGCAG
                      ____________________________________________________________
consensus             TCTCGAGCTTTCGCAGTAATGCTTCTAAAATCAATCCTCAAAGTCGCGGAGCCATTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          CTGACAGGCTTGAAGCCTGCATTCTATCTCGCAACAGTGCAAATCCTGAAAGACTCCATA
                      ____________________________________________________________
consensus             CTGACAGGCTTGAAGCCTGCATTCTATCTCGCAACAGTGCAAATCCTGAAAGACTCCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          TCCGAGAAGGCCTCGAAAGCCGCACTGCACATTCTAATCAACGTTGCTCCATGGGCGAGG
                      ____________________________________________________________
consensus             TCCGAGAAGGCCTCGAAAGCCGCACTGCACATTCTAATCAACGTTGCTCCATGGGCGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          AACAGAATCAAAGCAGTAGAGGCCGGAGCCACGGCGGTGTTGATCGATCTCCTTATCGAA
                      ____________________________________________________________
consensus             AACAGAATCAAAGCAGTAGAGGCCGGAGCCACGGCGGTGTTGATCGATCTCCTTATCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          TCGACGGAGAAGAGGACATGTGAAATGATCCTAACGTCCCTGGATCAGCTCTGCCAGTGC
rJMFF046L10+                               GAAATGATCCTAACGTCCCTGGATCAGCTCTGCCAGTGC
                      ____________________________________________________________
consensus             TCGACGGAGAAGAGGACATGTGAAATGATCCTAACGTCCCTGGATCAGCTCTGCCAGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          GCGGAAGGGAGGGCGGAGCTGCTAAGCCATCCCGCCGGGCTCGCCGTCGTGTCCAAGAAA
rJMFF046L10+          GCGGAAGGGAGGGCGGAGCTGCTAAGCCATCCCGCCGGGCTCGCCGTCGTGTCCAAGAAA
                      ____________________________________________________________
consensus             GCGGAAGGGAGGGCGGAGCTGCTAAGCCATCCCGCCGGGCTCGCCGTCGTGTCCAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          ATCTTTAGGGTTTCGCATGCGGCCAGCGACAGAGCCGTCAAGATTCTGTACTCCATTTCT
rJMFF046L10+          ATCTTTAGGGTTTCGCATGCGGCCAGCGACAGAGCCGTCAAGATTCTGTACTCCATTTCT
                      ____________________________________________________________
consensus             ATCTTTAGGGTTTCGCATGCGGCCAGCGACAGAGCCGTCAAGATTCTGTACTCCATTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          AGGTTTTCGGCGACGGCGGCGGTTGTTCGTGAGATGTTGCAGTTGGGCGTGGCGGCGAAG
rJMFF046L10+          AGGTTTTCGGCGACGGCGGCGGTTGTTCGTGAGATGTTGCAGTTGGGCGTGGCGGCGAAG
                      ____________________________________________________________
consensus             AGGTTTTCGGCGACGGCGGCGGTTGTTCGTGAGATGTTGCAGTTGGGCGTGGCGGCGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          CTGTGCCTAGTGACGCAAGTTGATTGTGGGAGCAAGACGAAGGAGAGGGCCATGGGAATT
rJMFF046L10+          CTGTGCCTAGTGACGCAAGTTGATTGTGGGAGCAAGACGAAGGAGAGGGCCATGGGAATT
                      ____________________________________________________________
consensus             CTGTGCCTAGTGACGCAAGTTGATTGTGGGAGCAAGACGAAGGAGAGGGCCATGGGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          CTCAAACTGCATGCTAAGTCTTGGAAGAACTCTCCCTGTATTCCCATGAATTTGGCTTCT
rJMFF046L10+          CTCAAACTGCATGCTAAGTCTTGGAAGAACTCTCCCTGTATTCCCATGAATTTGGCTTCT
                      ____________________________________________________________
consensus             CTCAAACTGCATGCTAAGTCTTGGAAGAACTCTCCCTGTATTCCCATGAATTTGGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014M14+          TCTTACCCATCTTCTTGATGATGGTGATGAAGAACTTATTAGATAACATAGCAAT     
rJMFF046L10+          TCTTACCCATCTTCTTGATGATGGTGATGAAGAACTTATTAGATAACATAGCAATTGAAA
                      ____________________________________________________________
consensus             TCTTACCCATCTTCTTGATGATGGTGATGAAGAACTTATTAGATAACATAGCAATTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L10+          AACAAGAGAAAATTGTGCAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AACAAGAGAAAATTGTGCAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG