Contig 012452:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001A02Sequence552000276 (3)ref|XP_010327242.1|1e-42PREDICTED: polyadenylate-binding protein RBP45B-like isoform X3 [Solanum lycope773012452 (3)ref|XP_004153241.1|5e-55PREDICTED: polyadenylate-binding protein RBP45-like, partial [Cucumis sativus]
JMFF046I02Sequence599000276 (3)ref|XP_010327242.1|1e-54PREDICTED: polyadenylate-binding protein RBP45B-like isoform X3 [Solanum lycope541012452 (3)
JMFF048P22Sequence448000276 (3)ref|XP_009631415.1|1e-13PREDICTED: polyadenylate-binding protein RBP45-like isoform X1 [Nicotiana tomen444012452 (3)

Alignment

This contig is upended


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rJMFF001A02+                                                                ATAAGA
                      ____________________________________________________________
consensus                                                                   ATAAGA
 
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rJMFF001A02+          AGAGCCTAGGTACTCAGCCACAAGCTTCATCATATCAAAATAGCCAAGGGACTCAAAGTG
                      ____________________________________________________________
consensus             AGAGCCTAGGTACTCAGCCACAAGCTTCATCATATCAAAATAGCCAAGGGACTCAAAGTG
 
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rJMFF001A02+          ACGATGATCCAACTAACACAACTATATTTGTTGGTAATTTGGACGCGAGCGTCACGGATG
                      ____________________________________________________________
consensus             ACGATGATCCAACTAACACAACTATATTTGTTGGTAATTTGGACGCGAGCGTCACGGATG
 
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rJMFF001A02+          ATGCTCTGAGGCAGGTTTTTGCAAATTATGGTCAGTTACTTCATGTGAAAATACCTGTGG
                      ____________________________________________________________
consensus             ATGCTCTGAGGCAGGTTTTTGCAAATTATGGTCAGTTACTTCATGTGAAAATACCTGTGG
 
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rJMFF001A02+          GCAAGCGCTGTGGTTTTGTTCAATTTGCTGACAGGAGTTGTGCCGAGGAAGCTCTGCAAA
                      ____________________________________________________________
consensus             GCAAGCGCTGTGGTTTTGTTCAATTTGCTGACAGGAGTTGTGCCGAGGAAGCTCTGCAAA
 
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rJMFF001A02+          ACTTGAATGGAACTCAGTTGGGAGGACAGAGCATCCGCCTTTCATGGGGCCGTAGTCCTT
rJMFF046I02+                                                                     T
                      ____________________________________________________________
consensus             ACTTGAATGGAACTCAGTTGGGAGGACAGAGCATCCGCCTTTCATGGGGCCGTAGTCCTT
 
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rJMFF001A02+          CAAACAGACAGCCACAGGCTGAACCAAACCAATGGAACAGTGGATACTATGGATATGCTC
rJMFF046I02+          CAAACAGACAGCCACAGGCTGAACCAAACCAATGGAACAGTGGATACTANGGATATGCTC
                      ____________________________________________________________
consensus             CAAACAGACAGCCACAGGCTGAACCAAACCAATGGAACAGTGGATACTATGGATATGCTC
 
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rJMFF001A02+          CTGGATATGAAGCCTATGGATACCCTCCTGCTGCCGCTCAGGATCCAAATATGTACTATG
rJMFF048P22+                                                  GGATCCAAATATGTACTATG
rJMFF046I02+          CNGGATATGAAGCCTATGGATACCCTCCTGCTGCCGCTCAGGATCCAAATATGTACTATG
                      ____________________________________________________________
consensus             CTGGATATGAAGCCTATGGATACCCTCCTGCTGCCGCTCAGGATCCAAATATGTACTATG
 
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rJMFF001A02+          CAGGGTATGCCGGGTACGGAAACTATGCACCACCTCCACAGCAACAGCAGCAGCAGCTCC
rJMFF048P22+          CAGGGTATGCCGGGTACGGAAACTATGCACCACCTCCACAGCAACAGCAGCAGCAGCTCC
rJMFF046I02+          CAGGGTATGCCGGGTACGGAAACTATGCACCACCTCCACAGCAACAGCAGCAGCAGCTCC
                      ____________________________________________________________
consensus             CAGGGTATGCCGGGTACGGAAACTATGCACCACCTCCACAGCAACAGCAGCAGCAGCTCC
 
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rJMFF001A02+          AGCAACCCCAGGGATACACTGGATGAGGATGCTTCTGTCGGTTGCATTGCCGGTGGAAGA
rJMFF048P22+          AGCAACCCCAGGGATACACTGGATGAGGATGCTTCTGTCGGTTGCATTGCCGGTGGAAGA
rJMFF046I02+          AGCAACCCCAGGGATACACTGGATGAGGATGCTTCTGTCGGTTGCATTGCCGGTGGAAGA
                      ____________________________________________________________
consensus             AGCAACCCCAGGGATACACTGGATGAGGATGCTTCTGTCGGTTGCATTGCCGGTGGAAGA
 
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rJMFF001A02+          GGGACCATCGGCTTACACTTCTAATCGCGAATGTATAATAGCTAGACTGTGACTTCCTCC
rJMFF048P22+          GGGACCATCGGCTTACACTTCTAATCGCGAATGTATAATAGCTAGACTGTGACTTCCTCC
rJMFF046I02+          GGGACCATCGGCTTACACTTCTAATCGCGAATGTATAATAGCTAGACTGTGACTTCCTCC
                      ____________________________________________________________
consensus             GGGACCATCGGCTTACACTTCTAATCGCGAATGTATAATAGCTAGACTGTGACTTCCTCC
 
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rJMFF001A02+          CAGATTCCTGCTGTGGGCTAGTACCTCGAGATTCCTTGTATGGTTCTGATTTTGACTCTG
rJMFF048P22+          CAGATTCCTGCTGTGGGCTAGTACCTCGAGATTCCTTGTATGGTTCTGATTTTGACTCTG
rJMFF046I02+          CAGATTCCTGCTGTGGGCTAGTACCTCGAGATTCCTTGTATGGTTCTGATTTTGACTCTG
                      ____________________________________________________________
consensus             CAGATTCCTGCTGTGGGCTAGTACCTCGAGATTCCTTGTATGGTTCTGATTTTGACTCTG
 
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rJMFF001A02+          ATATACCCTGTGCGGTAGCTTGCTTGCCAACTTTTATATATTATTATTATTTTCTTCATT
rJMFF048P22+          ATATACCCTGTGCGGTAGCTTGCTTGCCAACTTTTATATATTATTATTATTTTCTTCATT
rJMFF046I02+          ATATACCCTGTGCGGTAGCTTGCTTGCCAACTTTTATATATTATTATTATTTTCTTCATT
                      ____________________________________________________________
consensus             ATATACCCTGTGCGGTAGCTTGCTTGCCAACTTTTATATATTATTATTATTTTCTTCATT
 
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rJMFF001A02+          TTTGAACTTGCTTTTTGCTGAGGCCTGAGGGTTCAT                        
rJMFF048P22+          TTTGAACTTGCTTTTTGCTGAGGCCTGAGGGTTCATTGTAGAAAACAATGAATGTAGTGA
rJMFF046I02+          TTTGAACTTGCTTTTTGCTGAGGCCTGAGGGTTCATTGTAGAAAACAATGAATGTAGTGA
                      ____________________________________________________________
consensus             TTTGAACTTGCTTTTTGCTGAGGCCTGAGGGTTCATTGTAGAAAACAATGAATGTAGTGA
 
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rJMFF048P22+          TATATTTTTGTTCGTTGCC                                         
rJMFF046I02+          TATATTTTTGTTCGTTGCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TATATTTTTGTTCGTTGCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG