| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019E11 | Sequence | 551 | 013071 (5) | ref|XP_006366815.1| | 2e-62 | PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006 | 757 | 012450 (7) | ref|XP_006344098.1| | 2e-76 | PREDICTED: uncharacterized LOC102577701 isoform X1 [Solanum tuberosum] ref|XP_00 |
| JMFF046F17 | Sequence | 586 | 012450 (7) | ref|XP_004242450.1| | 2e-99 | PREDICTED: FRIGIDA-like protein 3 [Solanum lycopersicum] ref|XP_010323105.1| PRE | 445 | 012450 (7) | ref|XP_009767897.1| | 1e-31 | PREDICTED: FRIGIDA-like protein 3 isoform X1 [Nicotiana sylvestris] ref|XP_00976 |
| JMFN014J02 | Sequence | 629 | 012450 (7) | ref|XP_009767900.1| | 6e-66 | PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana sylvestris] | |||||
| JMFN016H18 | Sequence | 578 | 012450 (7) | ref|XP_009629356.1| | 1e-62 | PREDICTED: FRIGIDA-like protein 3 isoform X1 [Nicotiana tomentosiformis] ref|XP_ | |||||
| JMSF042P18 | Sequence | 753 | 013071 (5) | ref|XP_006366815.1| | 2e-89 | PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006 | 660 | 012450 (7) | ref|XP_009629363.1| | 2e-73 | PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana tomentosiformis] |
| JMSF047B16 | Sequence | 714 | 013071 (5) | ref|XP_006366815.1| | 2e-83 | PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006 | 784 | 012450 (7) | ref|XP_006344098.1| | 4e-99 | PREDICTED: uncharacterized LOC102577701 isoform X1 [Solanum tuberosum] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
JMFF046F17- ATACCTATGGTTTCTCGTCGACGTCAAACAGCTG
____________________________________________________________
consensus ATACCTATGGTTTCTCGTCGACGTCAAACAGCTG
. : . : . : . : . : . :
JMFF046F17- ATTTATGCCGTTCCCTTGGATTGTCTGATAAAATGCCAGGTGTTATTAATGTGTTGGTTA
rJMFF019E11+ GATAAAATGCCAGGTGTTATTAATGTGTTGGTTA
rJMSF047B16+ GATAAAATGCCAGGTGTTATTAATGTGTTGGTTA
____________________________________________________________
consensus ATTTATGCCGTTCCCTTGGATTGTCTGATAAAATGCCAGGTGTTATTAATGTGTTGGTTA
. : . : . : . : . : . :
JMFF046F17- ATAATGGAAGGCATATAGATGCTGTTAATCTGGCTTTTGCCTTTGAGCTGACAGAGCAGT
rJMFF019E11+ ATAATGGAAGGCATATAGATGCTGTTAATCTGGCTTTTGCCTTTGAGCTGACAGAGCAGT
rJMSF047B16+ ATAATGGAAGGCATATAGATGCTGTTAATCTGGCTTTTGCCTTTGAGCTGACAGAGCAGT
____________________________________________________________
consensus ATAATGGAAGGCATATAGATGCTGTTAATCTGGCTTTTGCCTTTGAGCTGACAGAGCAGT
. : . : . : . : . : . :
JMFF046F17- TTCCACCTGTTTCTCTACTGAAATCTTATTTGAATGAGGCAAGCAAGGCTTCTCCTAGCA
rJMFF019E11+ TTCCACCTG-TTCTCTACTGAAATCTTATTTGAATGAGGCAAGCAAGGCTTCTCCTAGCA
rJMSF042P18+ TTGAATGAGGCAAGCAAGGCTTCTCCTAGCA
rJMSF047B16+ TTCCACCTGTTTCTCTACTGAAATCTTATTTGAATGAGGCAAGCAAGGCTTCTCCTAGCA
____________________________________________________________
consensus TTCCACCTGTTTCTCTACTGAAATCTTATTTGAATGAGGCAAGCAAGGCTTCTCCTAGCA
. : . : . : . : . : . :
JMFF046F17- AATCTGGAAATACATCCAATTCACAGAATGATATTATAAATGAGAAGGAGCTTAATGCAC
rJMFF019E11+ AATCTGGAAATACATCCAATTCACAGAATGATATTATAAATGAGAAGGAGCTTAATGCAC
rJMSF042P18+ AATCTGGAAATACATCCAATTCACAGAATGATATTATAAATGAGAAGGAGCTTAATGCAC
JMFN016H18- GAGCTTAATGCAC
JMFN014J02- ATACATCCAATTCACAGAATGATATTATAAATGAGAAGGAGCTTAATGCAC
rJMSF047B16+ AATCTGGAAATACATCCAATTCACAGAATGATATTATAAATGAGAAGGAGCTTAATGCAC
____________________________________________________________
consensus AATCTGGAAATACATCCAATTCACAGAATGATATTATAAATGAGAAGGAGCTTAATGCAC
. : . : . : . : . : . :
JMFF046F17- TGAAGGCTGTTATTAAATGCATTGAGGACCATAAGCTTGATGAGCAGTATCCCGTGGATC
rJMFF019E11+ TGAAGGCTGTTATTAAATGCATTGAGGACCATAAGCTTGATGAGCAGTATCCCGTGGATC
rJMSF042P18+ TGAAGGCTGTTATTAAATGCATTGAGGACCATAAGCTTGATGAGCAGTATCCCGTGGATC
JMFN016H18- TGAAGGCTGTTATTAAATGCATTGAGGACCATAAGCTTGATGAGCAGTATCCCGTGGATC
JMFN014J02- TGAAGGCTGTTATTAAATGCATTGAGGACCATAAGCTTGATGAGCAGTATCCCGTGGATC
rJMSF047B16+ TGAAGGCTGTTATTAAATGCATTGAGGACCATAAGCTTGATGAGCAGTATCCCGTGGATC
____________________________________________________________
consensus TGAAGGCTGTTATTAAATGCATTGAGGACCATAAGCTTGATGAGCAGTATCCCGTGGATC
. : . : . : . : . : . :
JMFF046F17- CACTCCAAAAACGAGTTCACCACCTGGAGAAAGCAAAGGCAGACAGTAAAAGAGGAACAG
rJMFF019E11+ CACTCCAAAAACGAGTTCACCACCTGGAGAAAGCAAAGGCAGACAGTAAAAGAGGAACAG
rJMSF042P18+ CACTCCAAAAACGAGTTCACCACCTGGAGAAAGCAAAGGCAGACAGTAAAAGAGGAACAG
JMFN016H18- CACTCCAAAAACGAGTTCACCACCTGGAGAAAGCAAAGGCAGACAGTAAAAGAGGAACAG
JMFN014J02- CACTCCAAAAACGAGTTCACCACCTGGAGAAAGCAAAGGCAGACAGTAAAAGAGGAACAG
rJMSF047B16+ CACTCCAAAAACGAGTTCACCACCTGGAGAAAGCAAAGGCAGACAGTAAAAGAGGAACAG
____________________________________________________________
consensus CACTCCAAAAACGAGTTCACCACCTGGAGAAAGCAAAGGCAGACAGTAAAAGAGGAACAG
. : . : . : . : . : . :
JMFF046F17- AAGTCGCAAAACCACAACCCAAAAGACCCCGTGCTAATGGTTTTGTAAATGGGCCCCGAG
rJMFF019E11+ AAGTCGCAAAACCACAACCCAAAAGACCCCGTGCTAATGGTTTTGTAAATGGGCCCCGAG
rJMSF042P18+ AAGTCGCAAAACCACAACCCAAAAGACCCCGTGCTAATGGTTTTGTAAATGGGCCCCGAG
JMFN016H18- AAGTCGCAAAACCACAACCCAAAAGACCCCGTGCTAATGGTTTTGTAAATGGGCCCCGAG
JMFN014J02- AAGTCGCAAAACCACAACCCAAAAGACCCCGTGCTAATGGTTTTGTAAATGGGCCCCGAG
rJMSF047B16+ AAGTCGCAAAACCACAACCCAAAAGACCCCGTGCTAATGGTTTTGTAAATGGGCCCCGAG
rJMFF046F17+ AATGGTTTTGTAAATGGGCCCCGAG
____________________________________________________________
consensus AAGTCGCAAAACCACAACCCAAAAGACCCCGTGCTAATGGTTTTGTAAATGGGCCCCGAG
. : . : . : . : . : . :
JMFF046F17- CCACTAACATTGCCACTGACAAGAACATGAACATCTACCCCAGAATGACTGACAGATACC
rJMFF019E11+ CCACTAACATTGCCACTGACAAGAACATGAACATCTACCCCAGAATGACTGACAGATACC
rJMSF042P18+ CCACTAACATTGCCACTGACAAGAACATGAACATCTACCCCAGAATGACTGACAGATACC
JMFN016H18- CCACTAACATTGCCACTGACAAGAACATGAACATCTACCCCAGAATGACTGACAGATACC
JMFN014J02- CCACTAACATTGCCACTGACAAGAACATGAACATCTACCCCAGAATGACTGACAGATACC
rJMSF047B16+ CCACTAACATTGCCACTGACAAGAACATGAACATCTACCCCAGAATGACTGACAGATACC
rJMFF046F17+ CCACTAACATTGCCACTGACAAGAACATGAACATCTACCCCAGAATGACTGACAGATACC
____________________________________________________________
consensus CCACTAACATTGCCACTGACAAGAACATGAACATCTACCCCAGAATGACTGACAGATACC
. : . : . : . : . : . :
JMFF046F17- CGCAATATGTGTATGACAGACCCCCAATCGCTTACACTGGACCAACTGACACCCACGCTC
rJMFF019E11+ CGCAATATGTGTATGACAGACCCCCATACGCTTACACTGGACCAACTGACACCCACGCTC
rJMSF042P18+ CGCAATATGTGTATGACAGACCCCCATACGCTTACACTGGACCAACTGACACCCACGCTC
JMFN016H18- CGCAATATGTGTATGACAGACCCCCATACGCTTACACTGGACCAACTGACACCCACGCTC
JMFN014J02- CGCAATATGTGTATGACAGACCCCCATACGCTTACACTGGACCAACTGACACCCACGCTC
rJMSF047B16+ CGCAATATGTGTATGACAGACCCCCATACGCTTACACTGGACCAACTGACACCCACGCTC
rJMFF046F17+ CGCAATATGTGTATGACAGACCCCCATACGCTTACACTGGACCAACTGACACCCACGCTC
____________________________________________________________
consensus CGCAATATGTGTATGACAGACCCCCATACGCTTACACTGGACCAACTGACACCCACGCTC
. : . : . : . : . : . :
JMFF046F17- CATCATTTCTGG
rJMFF019E11+ CATCATTTCTGGGTACTCCAGCTTACGGTCTTCCTGGGCATGGCAACTTCTTTGGAAATG
rJMSF042P18+ CATCATTTCTGGGTACTCCAGCTTACGGTCTTCCTGGGCATGGCAACTTCTTTGGAAATG
JMFN016H18- CATCATTTCTGGGTACTCCAGCTTACGGTCTTCCTGGGCATGGCAACTTCTTTGGAAATG
JMFN014J02- CATCATTTCTGGGTACTCCAGCTTACGGTCTTCCTGGGCATGGCAACTTCTTTGGAAATG
rJMSF047B16+ CATCATTTCTGGGTACTCCAGCTTACGGTCTTCCTGGGCATGGCAACTTCTTTGGAAATG
rJMFF046F17+ CATCATTTCTGGGTACTCCAGCTTACGGTCTTCCTGGGCATGGCAACTTCTTTGGAAATG
____________________________________________________________
consensus CATCATTTCTGGGTACTCCAGCTTACGGTCTTCCTGGGCATGGCAACTTCTTTGGAAATG
. : . : . : . : . : . :
rJMFF019E11+ GCTACCATTACCAGGCTGCTTACCTGCACTAATCAGTAGAGATGGCTGAACTTGATTATC
rJMSF042P18+ GCTACCATTACCAGGCTGCTTACCTGCACTAATCAGTAGAGATGGCTGAACTTGATTATC
JMFN016H18- GCTACCATTACCAGGCTGCTTACCTGCACTAATCAGTAGAGATGGCTGAACTTGATTATC
JMFN014J02- GCTACCATTACCAGGCTGCTTACCTGCACTAAT
rJMSF047B16+ GCTACCATTACCAGGCTGCTTACCTGCACTAATCAGTAGAGATGGCTGAACTTGATTATC
rJMFF046F17+ GCTACCATTACCAGGCTGCTTACCTGCACTAATCAGTAGAGATGGCTGAACTTGATTATC
____________________________________________________________
consensus GCTACCATTACCAGGCTGCTTACCTGCACTAATCAGTAGAGATGGCTGAACTTGATTATC
. : . : . : . : . : . :
rJMFF019E11+ CTCCTAGCTGCTTAGTCTTTAACCCTCCCACTCCCAGTTTGCTTAATTTGAACACTGTGA
rJMSF042P18+ CTCCTAGCTGCTTAGTCTTTAACCCTCCCACTCCCAGTTTGCTTAATTTGAACACTGTGA
JMFN016H18- CTCCTAGCTGCTTAGTCTTTAACCCTCCCACTCCCAGTTTGCTTAATTTGAACACTGTGA
rJMSF047B16+ CTCCTAGCTGCTTAGTCTTTAACCCTCCCACTCCCAGTTTGCTTAATTTGAACACTGTGA
rJMFF046F17+ CTCCTAGCTGCTTAGTCTTTAACCCTCCCACTCCCAGTTTGCTTAATTTGAACACTGTGA
____________________________________________________________
consensus CTCCTAGCTGCTTAGTCTTTAACCCTCCCACTCCCAGTTTGCTTAATTTGAACACTGTGA
. : . : . : . : . : . :
rJMFF019E11+ GCAACTTTAATACTGAAAAGCTAGCCTTGTTAATTTCTAGTCTGTTGTAAAAGCTAATAC
rJMSF042P18+ GCAACTTTAATACTGAAAAGCTAGCCTTGTTAATTTCTAGTCTGT
JMFN016H18- GCAACTTTAATACTGAAAAGCTAGCCTTGTTAATTTCTAGTCTGTTGTAAAAGCTAATAC
rJMSF047B16+ GCAACTTTAATACTGAAAAGCTAGCCTTGTTAATTTCTAGTCTGTTGTAAAAGCTAATAC
rJMFF046F17+ GCAACTTTAATACTGAAAAGCTAGCCTTGTTAATTTCTAGTCTGTTGTAAAAGCTAATAC
____________________________________________________________
consensus GCAACTTTAATACTGAAAAGCTAGCCTTGTTAATTTCTAGTCTGTTGTAAAAGCTAATAC
. : . : . : . : . : . :
rJMFF019E11+ TG
JMFN016H18- TGTGATCCCTTTA
rJMSF047B16+ TGTGATCCCTTTA
rJMFF046F17+ TGTGATCCCTTTAATATGCACCGAATTTATGTTCATAATTTAGTATGAATATTTGCCCCC
____________________________________________________________
consensus TGTGATCCCTTTAATATGCACCGAATTTATGTTCATAATTTAGTATGAATATTTGCCCCC