Contig 012449:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029O10Sequence606012449 (6)ref|XP_009611805.1|1e-30PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Nicotiana tomentosiform671012449 (6)ref|XP_009611805.1|8e-33PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Nicotiana tomentosiform
JMFF046F06Sequence497012449 (6)ref|XP_009611805.1|1e-29PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Nicotiana tomentosiform454012449 (6)ref|XP_009803292.1|0.001PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Nicotiana sylvestris]
JMFF051B20Sequence552012449 (6)ref|XP_009611805.1|3e-28PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Nicotiana tomentosiform438012449 (6)ref|XP_009803292.1|8e-04PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF051B20-                                                         AGTAGTAATAATAA
                      ____________________________________________________________
consensus                                                           AGTAGTAATAATAA
 
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JMFF051B20-           TCATCATCATCATATCTCTATCTACTCACAAAAACAATTCGGATAGTGTCTGTGAATCCA
JMFF046F06-                                                                  ATCCA
JMFF029O10-                                                                  ATCCA
                      ____________________________________________________________
consensus             TCATCATCATCATATCTCTATCTACTCACAAAAACAATTCGGATAGTGTCTGTGAATCCA
 
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JMFF051B20-           ATCCAAGGAATGGAAGAAGAAGAAGAAGAGCATCAAGCATCGGAGACACATGAATCTGTT
JMFF046F06-           ATCCAAGGAATGGAAGAAGAAGAAGAAGAGCATCAAGCATCGGAGACACATGAATCTGTT
JMFF029O10-           ATCCAAGGAATGGAAGAAGAAGAAGAAGAGCATCAAGCATCGGAGACACATGAATCTGTT
                      ____________________________________________________________
consensus             ATCCAAGGAATGGAAGAAGAAGAAGAAGAGCATCAAGCATCGGAGACACATGAATCTGTT
 
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JMFF051B20-           GGGTTCCAGAAGGGGTCCAAGAAGAAGAAGAGTAAAAATAGTAAGAGGTTTAGCAATGAA
JMFF046F06-           GGGTTCCAGAAGGGGTCCAAGAAGAAGAAGAGTAAAAATAGTAAGAGGTTTAGCAATGAA
JMFF029O10-           GGGTTCCAGAAGGGGTCCAAGAAGAAGAAGAGTAAAAATAGTAAGAGGTTTAGCAATGAA
                      ____________________________________________________________
consensus             GGGTTCCAGAAGGGGTCCAAGAAGAAGAAGAGTAAAAATAGTAAGAGGTTTAGCAATGAA
 
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JMFF051B20-           CAAGTGAAGTCACTGGAGACCATCTTTAAGCTGGAAACAAAGCTGGAGACCAAAAAGAAG
JMFF046F06-           CAAGTGAAGTCACTGGAGACCATCTTTAAGCTGGAAACAAAGCTGGAGACCAAAAAGAAG
JMFF029O10-           CAAGTGAAGTCACTGGAGACCATCTTTAAGCTGGAAACAAAGCTGGAGACCAAAAAGAAG
rJMFF029O10+                                     AAGCTGGAAACAAAGCTGGAGACCAAAAAGAAG
                      ____________________________________________________________
consensus             CAAGTGAAGTCACTGGAGACCATCTTTAAGCTGGAAACAAAGCTGGAGACCAAAAAGAAG
 
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JMFF051B20-           CTTCAGGTGGCCAGAGATTTGGGGCTGCAACCTCGCCAAGTAGCCATATGGTTTCAGAAC
JMFF046F06-           CTTCAGGTGGCCAGAGATTTGGGGCTGCAACCTCGCCAAGTAGCCATATGGTTTCAGAAC
JMFF029O10-           CTTCAGGTGGCCAGAGATTTGGGGCTGCAACCTCGCCAAGTAGCCATATGGTTTCAGAAC
rJMFF029O10+          CTTCAGGTGGCCAGAGATTTGGGGCTGCAACCTCGCCAAGTAGCCATATGGTTTCAGAAC
                      ____________________________________________________________
consensus             CTTCAGGTGGCCAGAGATTTGGGGCTGCAACCTCGCCAAGTAGCCATATGGTTTCAGAAC
 
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JMFF051B20-           AAAAGGGCCAGATGGAAATCCAAGCAAATAGAGGAAGACTACAGAGTCCTCAAAGCCAAA
JMFF046F06-           AAAAGGGCCAGATGGAAATCCAAGCAAATAGAGGAAGACTACAGAGTCCTCAGAGCCAAA
JMFF029O10-           AAAAGGGCCAGATGGAAATCCAAGCAAATAGAGGAAGACTACAGAGTCCTCAAAGCCAAA
rJMFF029O10+          AAAAGGGCCAGATGGAAATCCAAGCAAATAGAGGAAGACTACAGAGTCCTCAAAGCCAAA
                      ____________________________________________________________
consensus             AAAAGGGCCAGATGGAAATCCAAGCAAATAGAGGAAGACTACAGAGTCCTCAAAGCCAAA
 
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JMFF051B20-           TTTGATAACCTCAATGTGCAGTTTGATAACTTGAAGAAAGAAAAAGACTCTTTGCTTATA
JMFF046F06-           TTTGATAACCTCAATGTGCAGTTTGATAACTTGAAGAAAGAAAAAGACTCTTTGCTTATA
JMFF029O10-           TTTGATAACCTCAATGTGCAGTTTGATAACTTGAAGAAAGAAAAAGACTCTTTGCTTATA
rJMFF029O10+          TTTGATAACCTCAATGTGCAGTTTGATAACTTGAAGAAAGAAAAAGACTNTTTGCTTATA
                      ____________________________________________________________
consensus             TTTGATAACCTCAATGTGCAGTTTGATAACTTGAAGAAAGAAAAAGACTCTTTGCTTATA
 
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JMFF051B20-           CAGTCAGAGAAACTACGGAGCGAACTAGAAACAAAAGACATGGAGATGGGTAGTGGCTCA
JMFF046F06-           CAGTCAGAGAAACTACGGAGCGAACTAGAAACAAAAGACATGGAGATGGGTAGTGGCTCA
JMFF029O10-           CAGTCAGAGAAACTACGGAGCGAACTAGAAACAAAAGACATGGAGATGGGTAGTGGCTCA
rJMFF029O10+          CAGTCAGAGAAACTACGGAGCGAACTAGAAACAAAAGACATGGAGATGGGTAGTGGCTCA
rJMFF051B20+                                    AGAAACAAAAGACATGGAGATGGGTAGTGGCTCA
rJMFF046F06+                                   TAGAAACAAAAGACATGGAGATGGGTAGTGGCTCA
                      ____________________________________________________________
consensus             CAGTCAGAGAAACTACGGAGCGAACTAGAAACAAAAGACATGGAGATGGGTAGTGGCTCA
 
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JMFF051B20-           C-CAACAAAGACACAAACTATGAGTCCAAAGAGAGTGTANATGGGGGAAAGAGCATTGT 
JMFF046F06-           CACNNACAAGACACAAACTATGAGTCCAAAGAGAGTGTANATGGGGGAAGAAGCATTGTG
JMFF029O10-           CACAACAAAGACACAAACTATGAGTCCAAAGAGAGTGTAAATGGGGGAAGAAGCATTGTG
rJMFF029O10+          CACAACAAAGACACAAACTATGAGTCCAAAGAGAGTGTAAATGGGGGAAGAAGCATTGTG
rJMFF051B20+          CACAACAAAGACACAAACTATGAGTCCAAAGAGAGTGTAAATGGGGGAAGAAGCATTGTG
rJMFF046F06+          CACAACAAAGACACAAACTATGAGTCCAAAGAGAGTGTAAATGGGGGAAGAAGCATTGTG
                      ____________________________________________________________
consensus             CACAACAAAGACACAAACTATGAGTCCAAAGAGAGTGTAAATGGGGGAAGAAGCATTGTG
 
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JMFF046F06-           AGGGTTGAG                                                   
JMFF029O10-           AGGGTTGAGGGAGGATGAAGAGAAAGACAAGGCTTTATTAGCAGAAAAGTTTAAGCAAAA
rJMFF029O10+          AGGGTTGA-GGAGGATGAAGAGAAAGACAAGGCTTTATTAGCAGAAAAGTTTAAGCAAAA
rJMFF051B20+          AGGGTTGA-GGAGGATGAAGAGAAAGACAAGGCTTTATTAGCAGAAAAGTTTAAGCAAAA
rJMFF046F06+          AGGGTTGA-GGAGGATGAAGAGAAAGACAAGGCTTTATTAGCAGAAAAGTTTAAGCAAAA
                      ____________________________________________________________
consensus             AGGGTTGA-GGAGGATGAAGAGAAAGACAAGGCTTTATTAGCAGAAAAGTTTAAGCAAAA
 
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JMFF029O10-           AGAAGAAGCAGAGTTCTTGAACCTGGGGGAACTAGGGGGCAGCCCTTTAGCCTCA     
rJMFF029O10+          AGAAGAAGCAGAGTTNTTGAACCTGGGGGAACTAGGGGGCAGCCCTTTAGCCTCACCTGA
rJMFF051B20+          AGAAGAAGCAGAGTTCTTGAACCTGGGGGAACTAGGGGGCAGCCCTTTAGCCTCACCTGA
rJMFF046F06+          AGAAGAAGCAGAGTTCTTGAACCTGGGGGAACTAGGGGGCAGCCCTTTAGCCTCACCTGA
                      ____________________________________________________________
consensus             AGAAGAAGCAGAGTTCTTGAACCTGGGGGAACTAGGGGGCAGCCCTTTAGCCTCACCTGA
 
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rJMFF029O10+          ACAGTGGTGCAGTGGTAGCTTAAACATCCCCTTTGACCAATCATGTGGCACTCCAAAATG
rJMFF051B20+          ACAGTGGTGCAGTGGTAGCTTAAACATCCCCTTTGACCAATCATGTGGCACTCCAAAATG
rJMFF046F06+          ACAGTGGTGCAGTGGTAGCTTAAACATCCCCTTTGACCAATCATGTGGCACTCCAAAATG
                      ____________________________________________________________
consensus             ACAGTGGTGCAGTGGTAGCTTAAACATCCCCTTTGACCAATCATGTGGCACTCCAAAATG
 
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rJMFF029O10+          GTGGGATTTTTGAACTTNTACAGGTGGGATATTTGTTCTGTTTTTCATACTCTTTTTTGT
rJMFF051B20+          GTGGGATTTTTGAACTTCTACAGGTGGGATATTTGTTCTGTTTTTCATACTCTTTTTTGT
rJMFF046F06+          GTGGGATTTTTGAACTTCTACAGGTGGGATATTTGTTCTGTTTTTCATACTCTTTTTTGT
                      ____________________________________________________________
consensus             GTGGGATTTTTGAACTTCTACAGGTGGGATATTTGTTCTGTTTTTCATACTCTTTTTTGT
 
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rJMFF029O10+          TTTTTTTTTAGTTGATAGGAAAGGATGATATGAATGCAGTATTTAGCATCTGAGAACATA
rJMFF051B20+          TTTTTTTTTAGTTGATAGGAAAGGATGATATGAATGCAGTATTTAGCATCTGAGAACATA
rJMFF046F06+          TTTTTTTTTAGTTGATAGGAAAGGATGATATGAATGCAGTATTTAGCATCTGAGAACATA
                      ____________________________________________________________
consensus             TTTTTTTTTAGTTGATAGGAAAGGATGATATGAATGCAGTATTTAGCATCTGAGAACATA
 
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rJMFF029O10+          GAGATTAGCTGTTATAAAGAATTATTATTTATGGAAATT                     
rJMFF051B20+          GAGATTAGCTGTTATAAAGAATTATTATTTATGGAAATT                     
rJMFF046F06+          GAGATTAGCTGTTATAAAGAATTATTATTTATGGAAATTACATACAGAAAATTAGATCCC
                      ____________________________________________________________
consensus             GAGATTAGCTGTTATAAAGAATTATTATTTATGGAAATTACATACAGAAAATTAGATCCC