Contig 012448:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044E20Sequence619007893 (3)ref|XP_004228961.1|231PREDICTED: uncharacterized protein LOC101261851 [Solanum lycopersicum] ref|XP_01643012448 (3)
JMFF046C01Sequence597007893 (3)ref|XP_010656013.1|1e-66PREDICTED: dnaJ homolog subfamily B member 12-like [Vitis vinifera]594012448 (3)
JMSF024D17Sequence724007893 (3)ref|XP_010656013.1|2e-66PREDICTED: dnaJ homolog subfamily B member 12-like [Vitis vinifera]779012448 (3)emb|CBI27668.3|6e-14unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF024D17+                                   TCTCATCAGGTTCCATCCCACTTGCTTACAGGTCG
                      ____________________________________________________________
consensus                                      TCTCATCAGGTTCCATCCCACTTGCTTACAGGTCG
 
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rJMSF024D17+          AGAAGGTCCAACTGCTCCCAAAGGTTGTAGGGAGTTGGATCCAGCTGCCATGCCTTCTGA
                      ____________________________________________________________
consensus             AGAAGGTCCAACTGCTCCCAAAGGTTGTAGGGAGTTGGATCCAGCTGCCATGCCTTCTGA
 
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rJMFF044E20+                        TTCCAGATGCTAATGAGGTGNAATGCATAATTGACGAGGGAAAGGA
rJMSF024D17+          ACTTCTTCATGTTATTCCAGATGCTAATGAGGTTGAATGCATAATTGACGAGGGAAAGGA
                      ____________________________________________________________
consensus             ACTTCTTCATGTTATTCCAGATGCTAATGAGGTTGAATGCATAATTGACGAGGGAAAGGA
 
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rJMFF044E20+          AGAAAATATAAGTGGTCATATAGGGAAGACTACCACCAAGGAGGAAGTAGAGTGTTCCAT
rJMSF024D17+          AGAAAATATAAGTGGTCATATAGGGAAGACTACCACCAAGGAGGAAGTAGAGTGTTCCAT
                      ____________________________________________________________
consensus             AGAAAATATAAGTGGTCATATAGGGAAGACTACCACCAAGGAGGAAGTAGAGTGTTCCAT
 
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rJMFF044E20+          TACTTTGGAAGTCACTGATGAGATTAAAGGGGAATCCAAGGATACCCGGAATAAGGCTGG
rJMSF024D17+          TACTTTGGAAGTCACTGATGAGATTAAAGGGGAATCCAAGGATACCCGGAATAAGGCTGG
rJMFF046C01+                GGAAGTCACTGATGAGATTAAAGGGGAATCCAAGGATACCCGGAATAAGGCTGG
                      ____________________________________________________________
consensus             TACTTTGGAAGTCACTGATGAGATTAAAGGGGAATCCAAGGATACCCGGAATAAGGCTGG
 
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rJMFF044E20+          GGAAGTAACATTGGTGAAGACAGTAAACCAGGAATGTAAATAGGACGTATCTACATCT-T
rJMSF024D17+          GGAAGTAACATTGGTGAAGACAGTAAACCAGGAATGTAAATAGGACGTATCTACATCTGT
rJMFF046C01+          GGAAGTAACATTGGTGAAGACAGTAAACCAGGAATGTAAATAGGACGTATCTACATCTGT
                      ____________________________________________________________
consensus             GGAAGTAACATTGGTGAAGACAGTAAACCAGGAATGTAAATAGGACGTATCTACATCTGT
 
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rJMFF044E20+          TGCAAAGGTTTTAAGTGACTGATATTATAGTTCAGTTTCAACTAAATCTTGATATGGTTC
rJMSF024D17+          TGCAAAGGTTTTAAGTGACTGATATTATAGTTCAGTTTCAACTAAATCTTGATATGGTTC
rJMFF046C01+          TGCAAAGGTTTTAAGTGACTGATATTATAGTTCAGTTTCAACTAAATCTTGATATGGTTC
                      ____________________________________________________________
consensus             TGCAAAGGTTTTAAGTGACTGATATTATAGTTCAGTTTCAACTAAATCTTGATATGGTTC
 
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rJMFF044E20+          TACTTCAGCTTGAAGCTGTTAAATCACATGACGCAATCAAAGCTGCAGCATATCTGCAAA
rJMSF024D17+          TACTTCAGCTTGAAGCTGTTAAATCACATGACGCAATCAAAGCTGCAGCATATCTGCAAA
rJMFF046C01+          TACTTCAGCTTGAAGCTGTTAAATCACATGACGCAATCAAAGCTGCAGCATATCTGCAAA
                      ____________________________________________________________
consensus             TACTTCAGCTTGAAGCTGTTAAATCACATGACGCAATCAAAGCTGCAGCATATCTGCAAA
 
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rJMFF044E20+          GTTGAAGGTAGTCATGATTCTTTGATGGCGAGCTCAGATGCAAATAATGGCAATGATTCA
rJMSF024D17+          GTTGAAGGTAGTCATGATTCTTTGATGGCGAGCTCAGATGCAAATAATGGCAATGATTCA
rJMFF046C01+          GTTGAAGGTAGTCATGATTCTTTGATGGCGAGCTCAGATGCAAATAATGGCAATGATTCA
                      ____________________________________________________________
consensus             GTTGAAGGTAGTCATGATTCTTTGATGGCGAGCTCAGATGCAAATAATGGCAATGATTCA
 
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rJMFF044E20+          AGACGAAGAGGTGCATACTTCTTTGTGTAACTGTTCACAGATGAAAAGATTTTAAATGCC
rJMSF024D17+          AGACGAAGAGGTGCATACTTCTTTGTGTAACTGTTCACAGATGAAAAGATTTTAAATGCC
rJMFF046C01+          AGACGAAGAGGTGCATACTTCTTTGTGTAACTGTTCACAGATGAAAAGATTTTAAATGCC
                      ____________________________________________________________
consensus             AGACGAAGAGGTGCATACTTCTTTGTGTAACTGTTCACAGATGAAAAGATTTTAAATGCC
 
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rJMFF044E20+          CTGGAGCTCATCAACATAGATTGTTGACCAGTGGCTGTCCTTTTCACTTGCTCCATTATT
rJMSF024D17+          CTGGAGCTCATCAACATAGATTGTTGACCAGTGGCTGTCCTTTTCACTTGCTCCATTATT
rJMFF046C01+          CTGGAGCTCATCAACATAGATTGTTGACCAGTGGCTGTCCTTTTCACTTGCTCCATTATT
                      ____________________________________________________________
consensus             CTGGAGCTCATCAACATAGATTGTTGACCAGTGGCTGTCCTTTTCACTTGCTCCATTATT
 
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rJMFF044E20+          ACTTGATTTGCCTTGTGCTTACTATCCCCTATTCCCCTCCCTTGAGTTTATATGAATGGA
rJMSF024D17+          ACTTGATTTGCCTTGTGCTTACTATCCCCTATTCCCCTCCCTTGAGTTTATATGAATGGA
rJMFF046C01+          ACTTGATTTGCCTTGTGCTTACTATCCCCTATTCCCCTCCCTTGAGTTTATATGAATGGA
                      ____________________________________________________________
consensus             ACTTGATTTGCCTTGTGCTTACTATCCCCTATTCCCCTCCCTTGAGTTTATATGAATGGA
 
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rJMFF044E20+          TCTTCCCCATACAATGATTGTACAGCCAAACAAA                          
rJMSF024D17+          TCTTCCCCATACAATGATTGTACAGCCAAACAAACAATAGGACTTGTGTTCTGTTTCTCT
rJMFF046C01+          TCTTCCCCATACAATGATTGTACAGCCAAACAAACAATAGGACTTGTGTTCTGTTTCTCT
                      ____________________________________________________________
consensus             TCTTCCCCATACAATGATTGTACAGCCAAACAAACAATAGGACTTGTGTTCTGTTTCTCT
 
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rJMSF024D17+          CTCTCTCTCTCTTTCAT                                           
rJMFF046C01+          CTCTCTCTCTCTTTCATTGAATCAGTATGCAATAGCACCATTTCTCACAAAAAAAAAAAG
                      ____________________________________________________________
consensus             CTCTCTCTCTCTTTCATTGAATCAGTATGCAATAGCACCATTTCTCACAAAAAAAAAAAG