| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020A10 | Sequence | 524 | 008815 (2) | ref|XP_009608593.1| | 2e-41 | PREDICTED: RNA-binding protein Musashi homolog 2 isoform X1 [Nicotiana tomentos | 663 | 012443 (5) | emb|CDP02498.1| | 5e-47 | unnamed protein product [Coffea canephora] |
| JMFF032D01 | Sequence | 446 | 008815 (2) | ref|XP_011099132.1| | 8e-26 | PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2 [Sesamum indicum] | 644 | 012443 (5) | emb|CDP02498.1| | 2e-34 | unnamed protein product [Coffea canephora] |
| JMFF045L17 | Sequence | 650 | 018478 | ref|XP_009608593.1| | 7e-67 | PREDICTED: RNA-binding protein Musashi homolog 2 isoform X1 [Nicotiana tomentos | 502 | 012443 (5) | emb|CDP02498.1| | 3e-10 | unnamed protein product [Coffea canephora] |
| JMSF002M22 | Sequence | 326 | 000556 (4) | 722 | 012443 (5) | emb|CDP02498.1| | 3e-46 | unnamed protein product [Coffea canephora] | |||
| JMSF029A01 | Sequence | 549 | 000556 (4) | ref|XP_011099132.1| | 6e-08 | PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2 [Sesamum indicum] | 724 | 012443 (5) | emb|CDP02498.1| | 5e-48 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF002M22+ GTAGANTTGGCCGAATTTTAGATGTTTATGTTCCTAAGGTA
rJMSF029A01+ TGGTAGATTTGGCCGAATTTTAGATGTTTATGTTCCTAAGGTA
____________________________________________________________
consensus TGGTAGATTTGGCCGAATTTTAGATGTTTATGTTCCTAAGGTA
. : . : . : . : . : . :
rJMSF002M22+ AGATTTGCATTTGTAATTCTGCAAATGAAACTTAAGTGTTTTCTTAGTAAAATGTTATTC
rJMSF029A01+ AGATTTGCATTTGTAATTCTGCAAATGAAACTTAAGTGTTTTCTTAGTAAAATGTTATTC
____________________________________________________________
consensus AGATTTGCATTTGTAATTCTGCAAATGAAACTTAAGTGTTTTCTTAGTAAAATGTTATTC
. : . : . : . : . : . :
rJMSF002M22+ TTTGTGTCATAGGATCCCAAGAGGACAGGTCATAGAGGATTTGG-TTTTGTTACATTTGC
rJMSF029A01+ TTTGTGTCATAGGATCCCAAGAGGACAGGTCATAGAGGATTTGG-TTTTGTTACATTTGC
rJMFF032D01+ GGATCCCAAGAGGACAGNTCATAGAGGATTTGGTTTTTGTTACATTTGC
rJMFF020A10+ AGGATCCCAAGAGGACAGGTCATAGAGGATTTGG-TTTTGTTACATTTGC
____________________________________________________________
consensus TTTGTGTCATAGGATCCCAAGAGGACAGGTCATAGAGGATTTGG-TTTTGTTACATTTGC
. : . : . : . : . : . :
rJMSF002M22+ TGAAGATGGTGTAGCAGACCGTGTTTCTCGAAGGACTCATGAGATTTGTGGACAGCAGGT
rJMSF029A01+ TGAAGATGGTGTAGCAGACCGTGTTTCTCGAAGGACTCATGAGATTTGTGGACAGCAGGT
rJMFF032D01+ TGAAGATGGTGTAGCAGACCGTGTTTCTCGAAGGACTCATGAGATTTGTGGACAGCAGGT
rJMFF020A10+ TGAAGATGGTGTAGCAGACCGTGTTTCTCGAAGGACTCATGAGATTTGTGGACAGCAGGT
____________________________________________________________
consensus TGAAGATGGTGTAGCAGACCGTGTTTCTCGAAGGACTCATGAGATTTGTGGACAGCAGGT
. : . : . : . : . : . :
rJMSF002M22+ TGCAATAGATTCTGCCACACCACTTGATGATGCTGGTGGTCCAAGTAATGGTTTCATGAT
rJMSF029A01+ TGCAATAGATTCTGCCACACCACTTGATGATGCTGGTGGTCCAAGTAATGGTTTCATGAT
rJMFF032D01+ TGCAATAGATTCTGCCACACCACTTGATGATGCTGGTGGTCCAAGTAATGGTTTCATGAT
rJMFF020A10+ TGCAATAGATTCTGCCACACCACTTGATGATGCTGGTGGTCCAAGTAATGGTTTCATGAT
rJMFF045L17+ GTCCAAGTAATGGTTTCATGAT
____________________________________________________________
consensus TGCAATAGATTCTGCCACACCACTTGATGATGCTGGTGGTCCAAGTAATGGTTTCATGAT
. : . : . : . : . : . :
rJMSF002M22+ AGATAATCACCCAGAACCATACGGGGGTTATGGTGGCCCAATGCGGACCTATGGCAGGAT
rJMSF029A01+ AGATAATCACCCAGAACCATACGGGGGTTATGGTGGCCCAATGCGGACCTATGGCAGGAT
rJMFF032D01+ AGATAATCACCCAGAACCATACGGGGGTTATGGTGGCCCAATGCGGACCTATGGCAGGAT
rJMFF020A10+ AGATAATCACCCAGAACCATACGGGGGTTATGGTGGCCCAATGCGGACCTATGGCAGGAT
rJMFF045L17+ AGATAATCACCCAGAACCATACGGGGGTTATGGTGGCCCAATGCGGACCTATGGCAGGAT
____________________________________________________________
consensus AGATAATCACCCAGAACCATACGGGGGTTATGGTGGCCCAATGCGGACCTATGGCAGGAT
. : . : . : . : . : . :
rJMSF002M22+ GTATGGTGGCCTGGGTTTTGATGATTGGGGATATGGCATGAACGGTGGCATGGGTAGTAG
rJMSF029A01+ GTATGGTGGCCTGGGTTTTGATGATTGGGGATATGGCATGAACGGTGGCATGGGTAGTAG
rJMFF032D01+ GTATGGTGGCCTGGGTTTTGATGATTGGGGATATGGCATGAACGGTGGCATGGGTAGTAG
rJMFF020A10+ GTATGGTGGCCTGGGTTTTGATGATTGGGGATATGGCATGAACGGTGGCATGGGTAGTAG
rJMFF045L17+ GTATGGTGGCCTGGGTTTTGATGATTGGGGATATGGCATGAACGGTGGCATGGGTAGTAG
____________________________________________________________
consensus GTATGGTGGCCTGGGTTTTGATGATTGGGGATATGGCATGAACGGTGGCATGGGTAGTAG
. : . : . : . : . : . :
rJMSF002M22+ TATGGGGGGAGGGAGACCTTCCCGGGCAGATATGAGGTATAGGCCTTATTAGTAGCAGTC
rJMSF029A01+ TATGGGGGGAGGGAGACCTTCCCGGGCAGATATGAGGTATAGGCCTTATTAGTAGCAGTC
rJMFF032D01+ TATGGGGGGAGGGAGACCTTCCCGGGCAGATATGAGGTATAGGCCTTATTAGTAGCAGTC
rJMFF020A10+ TATGGGGGGAGGGAGACCTTCCCGGGCAGATATGAGGTATAGGCCTTATTAGTAGCAGTC
rJMFF045L17+ TATGGGGGGAGGGAGACCTTCCCGGGCAGATATGAGGTATAGGCCTTATTAGTAGCAGTC
____________________________________________________________
consensus TATGGGGGGAGGGAGACCTTCCCGGGCAGATATGAGGTATAGGCCTTATTAGTAGCAGTC
. : . : . : . : . : . :
rJMSF002M22+ CCATCTTGATCTGAGTTACAAGCCTTTCTGATAGCAGTCTTGAGCATAAAGGATGTGTGC
rJMSF029A01+ CCATCTTGATCTGAGTTACAAGCCTTTCTGATAGCAGTCTTGAGCATAAAGGATGTGTGC
rJMFF032D01+ CCATCTTGATCTGAGTTACAAGCCTTTCTGATAGCAGTCTTGAGCATAAAGGATGTGTGC
rJMFF020A10+ CCATCTTGATCTGAGTTACAAGCCTTTCTGATAGCAGTCTTGAGCATAAAGGATGTGTGC
rJMFF045L17+ CCATCTTGATTTGAGTTACAAGCCTTTTTGATAGCAGTCTTGAGCATAAAGGATGTGTGC
____________________________________________________________
consensus CCATCTTGATCTGAGTTACAAGCCTTTCTGATAGCAGTCTTGAGCATAAAGGATGTGTGC
. : . : . : . : . : . :
rJMSF002M22+ CCCTTGCTAAAAGCAGTTACGAAAAATCGTATCATTGGCCAAGCCTGGAGTTATAACGCA
rJMSF029A01+ CCCTTGCTAAAAGCAGTTACGAAAAATCGTATCATTGGCCAAGCCTGGAGTTATAACGCA
rJMFF032D01+ CCCTTGCTAAAAGCAGTTACGAAAAATCGTATCATTGGCCAAGCCTGGAGTTATAACGCA
rJMFF020A10+ CCCTTGCTAAAAGCAGTTACGAAAAATCGTATCATTGGCCAAGCCTGGAGTTATAACGCA
rJMFF045L17+ CCCTTGCTAAAAGCAGTTACGAAAAATCGTATCATTGGCCAAGCCTGGAGTTATAACGCA
____________________________________________________________
consensus CCCTTGCTAAAAGCAGTTACGAAAAATCGTATCATTGGCCAAGCCTGGAGTTATAACGCA
. : . : . : . : . : . :
rJMSF002M22+ ACATGCAGCCACTTGTTGCCATTATATCTTTGAACCATTGATTATGGTGTAACTGGAATA
rJMSF029A01+ ACATGCAGCCACTTGTTGCCATTATATCTTTGAACCATTGATTATGGTGTAACTGGAATA
rJMFF032D01+ ACATGCAGCCACTTGTTGCCATTATATCTTTGAACCATTGATTATGGTGTAACTGGAATA
rJMFF020A10+ ACATGCAGCCACTTGTTGCCATTATATCTTTGAACCATTGATTATGGTGTAACTGGAATA
rJMFF045L17+ ACATGCAGCCACTTGTTGCCATTATATCTTTGAACCATTGATTATGGTGTAACTGGAATA
____________________________________________________________
consensus ACATGCAGCCACTTGTTGCCATTATATCTTTGAACCATTGATTATGGTGTAACTGGAATA
. : . : . : . : . : . :
rJMSF002M22+ GTTATGTTATATTTTACTTTCATAAGTTTAGAAAGCTTTTGCAGGGGCCAGAAAGGATGC
rJMSF029A01+ GTTATGTTATATTTTACTTTCATAAGTTTAGAAAGCTTTTGCAGGGGCCAGAAAGGATGC
rJMFF032D01+ GTTATGTTATATTTTACTTTCATAAGTTTAGAAAGCTTTTGCAGGGGCCAGAAAGGATGC
rJMFF020A10+ GTTATGTTATATTTTACTTTCATAAGTTTAGAAAGCTTTTGCAGGGGCCAGAAAGGATGC
rJMFF045L17+ GTTATGTTATATTTTACTTTCATAAGTTTAGAAAGCTTTTGCAGGGGCCAGAAAGGATGC
____________________________________________________________
consensus GTTATGTTATATTTTACTTTCATAAGTTTAGAAAGCTTTTGCAGGGGCCAGAAAGGATGC
. : . : . : . : . : . :
rJMSF002M22+ CCCACTGTAATGTACAAT
rJMSF029A01+ CCCACTGTAATGTACAAT
rJMFF032D01+ CCCACTGTAATGTACAATTGAATTCACAATTTTCTAATGCCATTGTTGAACTTAT
rJMFF020A10+ CCCACTGTAATGTACAATTGAATTCACAATTTTCTAATGCCATTGTTGAACTTAT
rJMFF045L17+ CCCCCTGTAATGTACAATTGAATTCACAATTTTTTAATGCCATTGTTGAACTTATTGCTT
____________________________________________________________
consensus CCCACTGTAATGTACAATTGAATTCACAATTTTCTAATGCCATTGTTGAACTTATTGCTT