| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF045E11 | Sequence | 627 | 015310 | ref|XP_010065789.1| | 1e-35 | PREDICTED: cation/calcium exchanger 4-like [Eucalyptus grandis] | 573 | 012439 (5) | emb|CDP03076.1| | 5e-53 | unnamed protein product [Coffea canephora] |
| JMFN002E11 | Sequence | 536 | 012439 (5) | ref|XP_009610275.1| | 9e-79 | PREDICTED: cation/calcium exchanger 3-like [Nicotiana tomentosiformis] | |||||
| JMFN006M10 | Sequence | 459 | 012439 (5) | ref|XP_004287643.1| | 3e-37 | PREDICTED: cation/calcium exchanger 4-like [Fragaria vesca subsp. vesca] | |||||
| JMFS093B04 | Sequence | 157 | 012439 (5) | ||||||||
| JMSF050B21 | Sequence | 456 | 000426 (2) | ref|XP_010090175.1| | 7e-11 | Cation/calcium exchanger 4 [Morus notabilis] gb|EXB38972.1| Cation/calcium excha | 568 | 012439 (5) | ref|XP_009610275.1| | 1e-55 | PREDICTED: cation/calcium exchanger 3-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFN002E11- CTGCTAGAAGTTCCTCTGATGCTCCCGAGGCGTCT
____________________________________________________________
consensus CTGCTAGAAGTTCCTCTGATGCTCCCGAGGCGTCT
. : . : . : . : . : . :
JMFN002E11- GACTATCCCGATACTCGACGAGCAGCAATGGTCTAAAGTGTATGCAGTTGCCAGTGCTGC
____________________________________________________________
consensus GACTATCCCGATACTCGACGAGCAGCAATGGTCTAAAGTGTATGCAGTTGCCAGTGCTGC
. : . : . : . : . : . :
JMFN002E11- TTTATCGCCACTGCTGTTAGCATTTCTTTGGAACACTCGAGACAACGTAGGCTCCCCGGG
____________________________________________________________
consensus TTTATCGCCACTGCTGTTAGCATTTCTTTGGAACACTCGAGACAACGTAGGCTCCCCGGG
. : . : . : . : . : . :
JMFN002E11- CTGGGAGATCGTCTGCTTCATTGGTGCTATTGTGGGGAGCACGCTAGGAGGGCTCGCGTT
____________________________________________________________
consensus CTGGGAGATCGTCTGCTTCATTGGTGCTATTGTGGGGAGCACGCTAGGAGGGCTCGCGTT
. : . : . : . : . : . :
JMFN002E11- TATCTACACCAGACCCGATCACCCGCCTCAACGGTTCTTGTTCCCGTGGATTTTCGGTGG
rJMSF050B21+ TGTTCCCGTGGATTTTCGGTGG
____________________________________________________________
consensus TATCTACACCAGACCCGATCACCCGCCTCAACGGTTCTTGTTCCCGTGGATTTTCGGTGG
. : . : . : . : . : . :
JMFN002E11- CTTCTTCATGAGCATCGTCTGGTTCTACATCCTGGCAAACGAGCTAGTCGCCCTGCTAGT
rJMSF050B21+ CTTNTTCATGAGCATCGTCTGGTTCTACATCCTGGCAAACGAGCTAGTCGCCCTGCTAGT
rJMFF045E11+ ACATCCTGGCAAACGAGCTAGTCGCCCTGCTAGT
____________________________________________________________
consensus CTTCTTCATGAGCATCGTCTGGTTCTACATCCTGGCAAACGAGCTAGTCGCCCTGCTAGT
. : . : . : . : . : . :
JMFN002E11- CTCGTTTGGGGTCATATTTGGAATCAACCCGTCCCTCCTCGCGTTGACAGTCCTGGCCTG
rJMSF050B21+ CTCGTTTGGGGTCATATTTGGAATCAACCCGTCCCTCCTCGTGTTGACAGTCCTGGCNTG
JMFN006M10- TG
rJMFF045E11+ CTCGTTTGGGGTCATATTTGGAATCAACCCGTCCCTCCTCGCGTTGACAGTCCTGGCCTG
____________________________________________________________
consensus CTCGTTTGGGGTCATATTTGGAATCAACCCGTCCCTCCTCGCGTTGACAGTCCTGGCCTG
. : . : . : . : . : . :
JMFN002E11- GGGCAACTCCCTAGGCGACCTGATGGCCAACGTCGCGATGGCAATGAAAAACGGGGATGG
rJMSF050B21+ GGGCAACTCCCTAGGCGACNTGATGGCCAACGTCGNGATGGCAATGAAAAACGGGGATGG
JMFN006M10- GGGCAACTCCCTAGGCGACCTGATGGCCAACGTCGCGATGGCAATGAAAAACGGGGATGG
rJMFF045E11+ GGGCAACTCCCTAGGCGACCTGATGGCCAACGTCGCGATGGCAATGAAAAACGGGGATGG
____________________________________________________________
consensus GGGCAACTCCCTAGGCGACCTGATGGCCAACGTCGCGATGGCAATGAAAAACGGGGATGG
. : . : . : . : . : . :
JMFN002E11- CGTCCAGATCGCAATGTCGGGATGCTACGGTGGCCCGATGTTCAACACCCTCATCGGCCT
rJMSF050B21+ CGTCCAGATCGCAATGTCGGGATGCTACGNTGNCCCGATGTTCAACACCNTCATCGGCCT
JMFN006M10- CGTCCAGATCGCAATGTCGGGATGCTACGGTGGCCCGATGTTCAACACCCTCATCGGCCT
rJMFF045E11+ CGTCCAGATCGCAATGTCGGGATGCTACGGTGGCCCGATGTTCAACACCCTCATCGGCCT
____________________________________________________________
consensus CGTCCAGATCGCAATGTCGGGATGCTACGGTGGCCCGATGTTCAACACCCTCATCGGCCT
. : . : . : . : . : . :
JMFN002E11- AGGCATCTCC
rJMSF050B21+ AGGCATCTCCNNNNTGCTNGGAGCCTGGTCCCAGAGGCCGGGCTCTTACACAATCCCGAA
JMFN006M10- AGGCATCTCCTTGCTGCTCGGAGCCTGGTCCCAGAGGCCGGGCTCTTACACAATCCCGAA
rJMFF045E11+ AGGCATCTCCTTGCTGCTCGGAGCCTGGTCCCAGAGGCCGGGCTCTTACACAATCCCGAA
____________________________________________________________
consensus AGGCATCTCCTTGCTGCTCGGAGCCTGGTCCCAGAGGCCGGGCTCTTACACAATCCCGAA
. : . : . : . : . : . :
rJMSF050B21+ AGACACCAGCCTGTANTACACACTCGNTTTTTTGGTGTTGGCACTGCTGTTCGCCCTNGT
JMFN006M10- AGACACCAGCCTGTACTACACACTCGGTTTTTTGGTGTTGGCACTGCTGTTCGCCCTCGT
rJMFF045E11+ AGACACCAGCCTGTACTACACACTCGGTTTTTTGGTGTTGGCACTGCTGTTCGCCCTCGT
____________________________________________________________
consensus AGACACCAGCCTGTACTACACACTCGGTTTTTTGGTGTTGGCACTGCTGTTCGCCCTCGT
. : . : . : . : . : . :
rJMSF050B21+ TGTGCTTCCAAGAAACGAGATGCGCCCCAACAAAGTGTTGGGCTTCGGANATTATGACCT
JMFN006M10- TGTGCTTCCAAGAAACGAGATGCGCCCCAACAAAGTGTTGGGCTTCGGA-CTTATGACCT
rJMFF045E11+ TGTGCTTCCAAGAAACGAGATGCGCCCCAACAAAGTGTTGGGCTTCGGA-CTTATGACCT
____________________________________________________________
consensus TGTGCTTCCAAGAAACGAGATGCGCCCCAACAAAGTGTTGGGCTTCGGA-CTTATGACCT
. : . : . : . : . : . :
rJMSF050B21+ TGTATTTGTTGTTCCTATCCATTCGAGATAGCATCGCCTTGGGCGATGGCTCGCTCCCCA
JMFN006M10- TGTATTTGTTGTTCCTATCCATTCGAGCTAGCATCGCCTTGGGCGATGGCTCGCTCCCCA
JMFS093B04+ TCCTATCCATTCGAGCTAGCATCGCCTTGGGCGATGGCTCGCTCCCCA
rJMFF045E11+ TGTATTTGTTGTTCCTATCCATTCGAGCTAGCATCGCCTTGGGCGATGGCTCGCTCCCCA
____________________________________________________________
consensus TGTATTTGTTGTTCCTATCCATTCGAGCTAGCATCGCCTTGGGCGATGGCTCGCTCCCCA
. : . : . : . : . : . :
rJMSF050B21+ CCCAAGCTAACCTCAATTAGCATAAGCTTTGTACAGATACCATAGCCCCCACGCCCCTGG
JMFN006M10- CCCAAGCTAACCTCAATTAGCATAAGCTTTGTACAGATACCATAGCCCCCACGCCCCTGG
JMFS093B04+ CCCAAGCTAACCTCAATTAGCATAAGCTTTGTACAGATACCATAGCCCCCACGCCCCTGG
rJMFF045E11+ CCCAAGCTAACCTCAATTAGCATAAGCTTTGTACAGATACCATAGCCCCCACGCCCCTGG
____________________________________________________________
consensus CCCAAGCTAACCTCAATTAGCATAAGCTTTGTACAGATACCATAGCCCCCACGCCCCTGG
. : . : . : . : . : . :
rJMSF050B21+ CAT
JMFN006M10- CATGCCATTAAGTTTTCCTAGTATATTTTCGGATGC
JMFS093B04+ CATGCCATTAAGTTTTCCTAGTATATTTTCGGATGCATGAAATGAATAT
rJMFF045E11+ CATGCCATTAAGTTTTCCTAGTATATTTTCGGATGCATGAAATGAATATCTAGTTGTTAC
____________________________________________________________
consensus CATGCCATTAAGTTTTCCTAGTATATTTTCGGATGCATGAAATGAATATCTAGTTGTTAC