Contig 012435:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012P24Sequence534012435 (6)emb|CDO98033.1|3e-40unnamed protein product [Coffea canephora]173012435 (6)
JMFF044P04Sequence635012435 (6)emb|CDO98033.1|7e-41unnamed protein product [Coffea canephora]643012435 (6)emb|CDO98033.1|2e-15unnamed protein product [Coffea canephora]
JMSF051H16Sequence645012435 (6)emb|CDO98033.1|8e-40unnamed protein product [Coffea canephora]764012435 (6)emb|CDO98033.1|2e-39unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF051H16-             GATCTGCTCTTTTTCTACGGGGACGATAACCGATACTAGGGCACGAGAGAGAGAGATC
JMFF012P24-                                                       ACGAGAGAGAGAGATC
JMFF044P04-                                                       ACGAGAGAGAGAGATC
                      ____________________________________________________________
consensus               GATCTGCTCTTTTTCTACGGGGACGATAACCGATACTAGGGCACGAGAGAGAGAGATC
 
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JMSF051H16-           TAGAATTCGAATATGGATGCAACCGAGGAAGGATTGCTAGATAAAATCCGGCCACCGAGG
JMFF012P24-           TAGAATTCGAATATGGATGCAACCGAGGAAGGATTGCTAGATAAAATCCGGCCACCGAGG
JMFF044P04-           TAGAATTCGAATATGGATGCAACCGAGGAAGGATTGCTAGATAAAATCCGGCCACCGAGG
rJMSF051H16+                   AATATGGATGCAACCGAGGAAGGATTGCTAGATAAAATCCGGCCACCGAGG
                      ____________________________________________________________
consensus             TAGAATTCGAATATGGATGCAACCGAGGAAGGATTGCTAGATAAAATCCGGCCACCGAGG
 
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JMSF051H16-           CTAGAAGACGCCGGCCTCGAAGATTGTGCGCTGCCGCCGGAGTCCATCAAAGAGGCATTC
JMFF012P24-           CTAGAAGACGCCGGCCTCGAAGATTGTGCGCTGCCGCCGGAGTCCATCAAAGAGGCATTC
JMFF044P04-           CTAGAAGACGCCGGCCTCGAAGATTGTGCGCTGCCGCCGGAGTCCATCAAAGAGGCATTC
rJMSF051H16+          CTAGAAGACGCCGGCCTCGAAGATTGTGCGCTGCCGCCGGAGTCCATCAAAGAGGCATTC
                      ____________________________________________________________
consensus             CTAGAAGACGCCGGCCTCGAAGATTGTGCGCTGCCGCCGGAGTCCATCAAAGAGGCATTC
 
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JMSF051H16-           CTCAAGGCCGCGAGCGCCGTGCGGTCTATCATTTCCACATCGGACGACGAAGCCGAAGAC
JMFF012P24-           CTCAAGGCCGCGAGCGCCGTGCGGTCTATCATTTCCACATCGGACGACGAAGCCGAAGAC
JMFF044P04-           CTCAAGGCCGCGAGCGCCGTGCGGTCTATCATTTCCACATCGGACGACGAAGCCGAAGAC
rJMSF051H16+          CTCAAGGCCGCGAGCGCCGTGCGGTCTATCATTTCCACATCGGACGACGAAGCCGAAGAC
rJMFF044P04+                           CGTGCGGTCTATCATTTCCACATCGGACGACGAAGCCGAAGAC
                      ____________________________________________________________
consensus             CTCAAGGCCGCGAGCGCCGTGCGGTCTATCATTTCCACATCGGACGACGAAGCCGAAGAC
 
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JMSF051H16-           AGTTGCGTGGACGATCCGTGGCCGAGCACCGGAGATTCATCCGATTCGCTCGTCGGAATC
JMFF012P24-           AGTTGCGTGGACGATCCGTGGCCGAGCACCGGAGATTCATCCGATTCGCTCGTCGGAATC
JMFF044P04-           AGTTGCGTGGACGATCCGTGGCCGAGCACCGGAGATTCATCCGATTCGCTCGTCGGAATC
rJMSF051H16+          AGTTGCGTGGACGATCCGTGGCCGAGCACCGGAGATTCATCCGATTCGCTCGTCGGAATC
rJMFF044P04+          AGTTGCGTGGACGATCCGTGGCCGAGCACCGGAGATTCATCCGATTCGCTCGTCGGAATC
                      ____________________________________________________________
consensus             AGTTGCGTGGACGATCCGTGGCCGAGCACCGGAGATTCATCCGATTCGCTCGTCGGAATC
 
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JMSF051H16-           ACGGAGGGAGTCGACGGCGGCCCAGGCAGCTGCGTCACCGAGAAGCCAGGCGGTGGAGTT
JMFF012P24-           ACGGAGGGAGTCGACGGCGGCCCAGGCAGCTGCGTCACCGAGAAGCCAGGCGGTGGAGTT
JMFF044P04-           ACGGAGGGAGTCGACGGCGGCCCAGGCAGCTGCGTCACCGAGAAGCCAGGCGGTGGAGTT
rJMSF051H16+          ACGGAGGGAGTCGACGGCGGCCCAGGCAGCTGCGTCACCGAGAAGCCAGGCGGTGGAGTT
rJMFF044P04+          ACGGAGGGAGTCGACGGCGGCCCAGGCAGCTGCGTCACCGAGAAGCCAGGCGGTGGAGTT
                      ____________________________________________________________
consensus             ACGGAGGGAGTCGACGGCGGCCCAGGCAGCTGCGTCACCGAGAAGCCAGGCGGTGGAGTT
 
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JMSF051H16-           CCTGAAGTGGGCGGCGACGAGGTGGTTGTAGCCGGTGCAGGCGGAAACGAAGACAAAACG
rJMFF012P24+                         GACGAGGTGGTNGTAGCCGGTNCAGGCGGNANNGAAGACAAAACG
JMFF012P24-           CCTGAAGTGGGCGGCGACGAGGTGGTTGTAGCCGGTGCAGGCGGAAACGAAGACAAAACG
JMFF044P04-           CCTGAAGTGGGCGGCGACGAGGTGGTTGTAGCCGGTGCAGGCGGAAACGAAGACAAAACG
rJMSF051H16+          CCTGAAGTGGGCGGCGACGAGGTGGTTGTAGCCGGTGCAGGCGGAAACGAAGACAAAACG
rJMFF044P04+          CCTGAAGTGGGCGGCGACGAGGTGGTTGTAGCCGGTGCAGGCGGAAACGAAGACAAAACG
                      ____________________________________________________________
consensus             CCTGAAGTGGGCGGCGACGAGGTGGTTGTAGCCGGTGCAGGCGGAAACGAAGACAAAACG
 
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JMSF051H16-           GATGCGCTGGTGGCACCGGGTCTGCCCCGCGGCGGCGGAGCTTGCGTTGACGGATTAGAA
rJMFF012P24+          GATGCGNTGGTGGCNCCGGGTNTGCCCNGCGNCGGCGGAGCTTGNNTTGACGGATTAGAA
JMFF012P24-           GATGCGCTGGTGGCACCGGGTCTGCCCCGCGGCGGCGGAGCTTGCGTTGACGGATTAGAA
JMFF044P04-           GATGCGCTGGTGGCACCGGGTCTGCCCCGCGGCGGCGGAGCTTGCGTTGACGGATTAGAA
rJMSF051H16+          GATGCGCTGGTGGCACCGGGTCTGCCCCGCGGCGGCGGAGCTTGCGTTGACGGATTAGAA
rJMFF044P04+          GATGCGCTGGTGGCACCGGGTCTGCCCCGCGGCGGCGGAGCTTGCGTTGACGGATTAGAA
                      ____________________________________________________________
consensus             GATGCGCTGGTGGCACCGGGTCTGCCCCGCGGCGGCGGAGCTTGCGTTGACGGATTAGAA
 
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JMSF051H16-           GGATTGAAGATCGAAGAGAAGGCGAAAAATTCAAGCAAAAAACCGGCAAATGCGGATGAA
rJMFF012P24+          GGATTNAAGATCGGAGANAAGGNGAAANATTCAAGCAANAAGCCGGCAAATGCGGANGAA
JMFF012P24-           GGATTGAAGATCGGAGAGAAGGCGAAAAATTCAAGCAAAAAACCGGCAAATGCGGATGAA
JMFF044P04-           GGATTGAAGATCGGAGAGAAGGCGAAAAATTCAAGCAAAAAACCGGCAAATGCGGATGAA
rJMSF051H16+          GGATTGAAGATCGAAGAGAAGGCGAAAAATTCAAGCAAAAAACCGGCAAATGCGGATGAA
rJMFF044P04+          GGATTGAAGATCGGAGAGAAGGCGAAAAATTCAAGCAAAAAACCGGCAAATGCGGATGAA
                      ____________________________________________________________
consensus             GGATTGAAGATCGGAGAGAAGGCGAAAAATTCAAGCAAAAAACCGGCAAATGCGGATGAA
 
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JMSF051H16-           GATGATGATGAAAAGACTGAAAAACCAATCATAGTTGAAGGTGGTTATGCATAGTAAACC
rJMFF012P24+          GATGAT                                                      
JMFF012P24-           GATGATGATGAAAAGACTGAAAAACCAATCATAGTTGA                      
JMFF044P04-           GATGATGATGAAAAGACTGAAAAACCAATCATAGTTGAAGGTGGTTATGCATAGTAAACC
rJMSF051H16+          GATGATGATGAAAAGACTGAAAAACCAATCATAGTTGAAGGTGGTTATGCATAGTAAACC
rJMFF044P04+          GATGATGATGAAAAGACTGAAAAACCAATCATAGTTGAAGGTGGTTATGCATAGTAAACC
                      ____________________________________________________________
consensus             GATGATGATGAAAAGACTGAAAAACCAATCATAGTTGAAGGTGGTTATGCATAGTAAACC
 
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JMSF051H16-           GTGTCATTTCACCATTAAATTTGCACTATAGTCTAGAGTTTATTA               
JMFF044P04-           GTGTCATTTCACCATTANATTTGCACTATAGTCTAGAGTTTATTANATGCTTAAATGTAG
rJMSF051H16+          GTGTCATTTCACCATTAAATTTGCACTATAGTCTAGAGTTTATTAAATGCTTAAATGTAG
rJMFF044P04+          GTGTCATTTCACCATTAAATTTGCACTATAGTCTAGAGTTTATTAAATGCTTAAATGTAG
                      ____________________________________________________________
consensus             GTGTCATTTCACCATTAAATTTGCACTATAGTCTAGAGTTTATTAAATGCTTAAATGTAG
 
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JMFF044P04-           ATGTGACCTCCATTCTTC                                          
rJMSF051H16+          ATGTGACCTCCATTCTTCCTCCTTTCAATCTTCATGCCCTACCAGCCCACCCTTGGAATC
rJMFF044P04+          ATGTGACCTCCATTCTTCCTCCTTTCAATCTTCATGCCCTACCAGCCCACCCTTGGAATC
                      ____________________________________________________________
consensus             ATGTGACCTCCATTCTTCCTCCTTTCAATCTTCATGCCCTACCAGCCCACCCTTGGAATC
 
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rJMSF051H16+          TCATATTAAGATAGTAGTTGTACAACTTGTCTTGTAAGTTGAGCTAATCCATTAATGATG
rJMFF044P04+          TCATATTAAGATAGTAGTTGTACAACTTGTCTTGTAAGTTGAGCTAATCCATTAATGATG
                      ____________________________________________________________
consensus             TCATATTAAGATAGTAGTTGTACAACTTGTCTTGTAAGTTGAGCTAATCCATTAATGATG
 
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rJMSF051H16+          TTGACTTTCTTCCA                                              
rJMFF044P04+          TTGACTTTCTTCCAAAAAAGAAAAAAAAAAAAAAACTTTCCAGGGTGATCCGGCCAAAGG
                      ____________________________________________________________
consensus             TTGACTTTCTTCCAAAAAAGAAAAAAAAAAAAAAACTTTCCAGGGTGATCCGGCCAAAGG