| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020N18 | Sequence | 565 | 006008 (8) | ref|XP_006367734.1| | 2e-07 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] | 758 | 012431 (6) | gb|ACJ85808.1| | 1e-66 | unknown [Medicago truncatula] |
| JMFF031C03 | Sequence | 495 | 006008 (8) | 615 | 012431 (6) | ref|XP_006367734.1| | 3e-42 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] | |||
| JMFF044J23 | Sequence | 631 | 006008 (8) | ref|XP_009629595.1| | 2e-27 | PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis] | 616 | 012431 (6) | ref|XP_006367734.1| | 7e-37 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] |
| JMSF009B14 | Sequence | 243 | 006008 (8) | 755 | 012431 (6) | ref|XP_006367734.1| | 4e-79 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] | |||
| JMSF038N13 | Sequence | 340 | 000510 (2) | 877 | 012431 (6) | ref|XP_006367734.1| | 8e-98 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] | |||
| JMSF040N15 | Sequence | 650 | 006008 (8) | ref|XP_009629595.1| | 6e-20 | PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis] | 809 | 012431 (6) | ref|XP_006367734.1| | 2e-80 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF038N13+ TATTGGTCATTGCTCTCGCCCCTAATTTTCTCTGATCATC
____________________________________________________________
consensus TATTGGTCATTGCTCTCGCCCCTAATTTTCTCTGATCATC
. : . : . : . : . : . :
rJMSF009B14+ AACATGCTTAGGAATGTTTTAG
rJMSF040N15+ CCCCGCCCTACAACATGCTTAGGAATGTCTTAG
rJMSF038N13+ CGAAGAGACCTGGCGATGAGGATCCTTCCCCGCCCTACAACATGCTTAGGAATGTCTTAG
____________________________________________________________
consensus CGAAGAGACCTGGCGATGAGGATCCTTCCCCGCCCTACAACATGCTTAGGAATGTCTTAG
. : . : . : . : . : . :
rJMSF009B14+ ACATGAACGCCCGTTTTGGTGGTTTCAATGCTGCTTTATTGGAAGCAGGAAAATCGGTGT
rJMSF040N15+ ACATGAACGCCCGTTTTGGTGGTTTCAATGCTGCTTTATTGGAAGCAGGAAAATCGGTGT
rJMSF038N13+ ACATGAACGCCCGTTTTGGTGGTTTCAATGCTGCTTTATTGGAAGCAGGAAAATCGGTGT
rJMFF020N18+ GTTTCAATGCTGCTTTATTGGAAGCAGGAAAATCGGTGT
____________________________________________________________
consensus ACATGAACGCCCGTTTTGGTGGTTTCAATGCTGCTTTATTGGAAGCAGGAAAATCGGTGT
. : . : . : . : . : . :
rJMSF009B14+ GGGTCATGAATGTGATCCCAACTAGTGCTCAGAATTTCCTCCCCCTAATCCTTGACAGGG
rJMSF040N15+ GGGTCATGAATGTGATCCCAACTAGTGCTCAGAATTTCCTCCCCCTAATCCTTGACAGGG
rJMSF038N13+ GGGTCATGAATGTGATCCCAACTAGTGCTCAGAATTTCCTCCCCCTAATCCTTGACAGGG
rJMFF020N18+ GGGTCATGAATGTGATCCCAACTAGTGCTCAGAATTTCCTCCCCNTAATCCTTGACAGGG
____________________________________________________________
consensus GGGTCATGAATGTGATCCCAACTAGTGCTCAGAATTTCCTCCCCCTAATCCTTGACAGGG
. : . : . : . : . : . :
rJMSF009B14+ GATTCGTCGGTGTTTTACACGATTGGTGCGAAGCATTTCCAACGTATCCAAGAACTTATG
rJMSF040N15+ GATTCGTCGGTGTTTTACACGATTGGTGCGAAGCATTTCCAACGTATCCAAGAACTTATG
rJMSF038N13+ GATTCGTCGGTGTTTTACACGATTGGTGCGAAGCATTTCCAACGTATCCAAGAACTTATG
rJMFF031C03+ GTGCGAAGCATTTCCAACGTATCCAAGAACTTATG
rJMFF020N18+ GATTCGTCGGTGTTTTACACGATTGGTGCGAAGCATTTCCAACGTATCCAAGAACTTATG
rJMFF044J23+ TATCCAAGAACTTATG
____________________________________________________________
consensus GATTCGTCGGTGTTTTACACGATTGGTGCGAAGCATTTCCAACGTATCCAAGAACTTATG
. : . : . : . : . : . :
rJMSF009B14+ ATCTTGTCCATGCTGATGGACTTCTAACACTCGAGTTTAGTCAAAACAGCCACAGCAGAT
rJMSF040N15+ ATCTTGTCCATGCTGATGGACTTCTAACACTCGAGTTTAGTCAAAACAGCCACAGCAGAT
rJMSF038N13+ ATCTTGTCCATGCTGATGGACTTCTAACACTCGAGTTTAGTCAAAACAGCCACAGCAGAT
rJMFF031C03+ ATCTTGTCCATGCTGATGGACTTCTAACACTCGAGTTTAGTCAAAACAGCCACAGCAGAT
rJMFF020N18+ ATCTTGTCCATGCTGATGGACTTCTAACACTCGAGTTTAGTCAAAACAGCCACAGCAGAT
rJMFF044J23+ ATCTNGTCCATGCTGATGGACTTCTAACACTCGAGTTTAGTCAAAACAGCCACAGCAGAT
____________________________________________________________
consensus ATCTTGTCCATGCTGATGGACTTCTAACACTCGAGTTTAGTCAAAACAGCCACAGCAGAT
. : . : . : . : . : . :
rJMSF009B14+ GCGGGATGTTAGAACTGTTCGTTGAAATAGATCGTATACTTCGTCCAGAGGGTTGGGTGA
rJMSF040N15+ GCGGGATGTTAGAACTGTTCGTTGAAATAGATCGTATACTTCGTCCAGAGGGTTGGGTGA
rJMSF038N13+ GCGGGATGTTAGAACTGTTCGTTGAAATAGATCGTATACTTCGTCCAGAGGGTTGGGTGA
rJMFF031C03+ GCGGGATGTTAGAACTGTTCGTTGAAATAGATCGTATACTTCGTCCAGAGGGTTGGGTGA
rJMFF020N18+ GCGGGATGTTAGAACTGTTCGTTGAAATAGATCGTATACTTCGTCCAGAGGGTTGGGTGA
rJMFF044J23+ GCGGGATGTNAGAACTGTTCGTTGAAATAGATCGTATACTTCGTCCAGAGGGTTGGGTGA
____________________________________________________________
consensus GCGGGATGTTAGAACTGTTCGTTGAAATAGATCGTATACTTCGTCCAGAGGGTTGGGTGA
. : . : . : . : . : . :
rJMSF009B14+ TCATACGGGACACAATTCCTCTGATCGAGTTAGCAAGAGATCACGCAGTGCAGCTGAAAT
rJMSF040N15+ TCATACGGGACACAATTCCTCTGATCGAGTTAGCAAGAGATCACGCAGTGCAGCTGAAAT
rJMSF038N13+ TCATACGGGACACAATTCCTCTGATCGAGTTAGCAAGAGATCACGCAGTGCAGCTGAAAT
rJMFF031C03+ TCATACGGGACACAATTCCTCTGATCGAGTTAGCAAGAGATCACGCAGTGCAGCTGAAAT
rJMFF020N18+ TCATACGGGACACAATTCCTCTGATCGAGTTAGCAAGAGATCACGCAGTGCAGCTGAAAT
rJMFF044J23+ TCATACGGGACACAATTCCTCTGATCGAGTTAGCAAGAGATCACGCAGTGCAGCTGAAAT
____________________________________________________________
consensus TCATACGGGACACAATTCCTCTGATCGAGTTAGCAAGAGATCACGCAGTGCAGCTGAAAT
. : . : . : . : . : . :
rJMSF009B14+ GGGATGCTCGAGTCATAGAAAGTAGCAGCGAGGAGAAACTCCTCGTTTGCCAGAAACCTT
rJMSF040N15+ GGGATGCTCGAGTCATAGAAAGTAGCAGCGAGGAGAAACTCCTCGTTTGCCAGAAACCTT
rJMSF038N13+ GGGATGCTCGAGTCATAGAAAGTAGCAGCGAGGAGAAACTCCTCGTTTGCCAGAAACCTT
rJMFF031C03+ GGGATGCTCGAGTCATAGAAAGTAGCAGCGAGGAGAAACTCCTCGTTTGCCAGAAACCTT
rJMFF020N18+ GGGATGCTCGAGTCATAGAAAGTAGCAGCGAGGAGAAACTCCTCGTTTGCCAGAAACCTT
rJMFF044J23+ GGGATGCTCGAGTCATAGAAAGTAGCAGCGAGGAGAAACTCCTCGTTTGCCAGAAACCTT
____________________________________________________________
consensus GGGATGCTCGAGTCATAGAAAGTAGCAGCGAGGAGAAACTCCTCGTTTGCCAGAAACCTT
. : . : . : . : . : . :
rJMSF009B14+ TTGTTAGAAAAGTGGCTACAAGCTAAGCTAGAATTGGCAGGCAGGGGGATTATGATTGTA
rJMSF040N15+ TTGTTAGAAAAGTGGCTACAAGCTAAGCTAGAATTGGCAGGCAGGGGGATTATGATTGTA
rJMSF038N13+ TTGTTAGAAAAGTGGCTACAAGCTAAGCTAGAATTGGCAGGCAGGGGGATTATGATTGTA
rJMFF031C03+ TTGTTAGAAAAGTGGCTACAAGCTAAGCTAGAATTGGCAGGCAGGGGGATTATGATTGTA
rJMFF020N18+ TTGTTAGAAAAGTGGCTACAAGCTAAGCTAGAATTGGCAGGCAGGGGGATTATGATTGTA
rJMFF044J23+ TTGTTAGAAAAGTGGCTACAAGCTAAGCTAGAATTGGCAGGCAGGGGGATTATGATTGTA
____________________________________________________________
consensus TTGTTAGAAAAGTGGCTACAAGCTAAGCTAGAATTGGCAGGCAGGGGGATTATGATTGTA
. : . : . : . : . : . :
rJMSF009B14+ GATGATAGTGTCCATATTCATTTCTCCATTTCAAGATTAATGGTGTGATAAAGTTCCACC
rJMSF040N15+ GATGATAGTGTCCATATTCATTTCTCCATTTCAAGATTAATGGTGTGATAAAGTTCCACC
rJMSF038N13+ GATGATAGTGTCCATATTCATTTCTCCATTTCAAGATTAATGGTGTGATAAAGTTCCACC
rJMFF031C03+ GATGATAGTGTCCATATTCATTTCTCCATTTCAAGATTAATGGTGTGATAAAGTTCCACC
rJMFF020N18+ GATGATAGTGTCCATATTCATTTCTCCATTTCAAGATTAATGGTGTGATAAAGTTCCACC
rJMFF044J23+ GATGATAGTGTCCATATTCATTTCTCCATTTCAAGATTAATGGTGTGATAAAGTTCCACC
____________________________________________________________
consensus GATGATAGTGTCCATATTCATTTCTCCATTTCAAGATTAATGGTGTGATAAAGTTCCACC
. : . : . : . : . : . :
rJMSF009B14+ CCAGAAAAAAAATGGTGGAATCAAAAGATTTTGAAGAGAGAGGAGAGGAGGAATACAAAT
rJMSF040N15+ CCAGAAAAAAAATGGTGGAATCAAAAGATTTTGAAGAGAGAGGAGAGGAGGAATACAAAT
rJMSF038N13+ CCAGAAAAAAAATGGTGGAATCAAAAGATTTTGAAGAGAGAGGAGAGGAGGAATACAAAT
rJMFF031C03+ CCAGAAAAAAAATGGTGGAATCAAAAGATTTTGAAGAGAGAGGAGAGGAGGAATACAAAT
rJMFF020N18+ CCAGAAAAAAAATGGTGGAATCAAAAGATTTTGAAGAGAGAGGAGAGGAGGAATACAAAT
rJMFF044J23+ CCAGAAAAAAAATGGTGGAATCAAAAGATTTTGAAGAGAGAGGAGAGGAGGAATACAAAT
____________________________________________________________
consensus CCAGAAAAAAAATGGTGGAATCAAAAGATTTTGAAGAGAGAGGAGAGGAGGAATACAAAT
. : . : . : . : . : . :
rJMSF009B14+ TAAAGGGGGTTCCAACTTCCAACTGCAACATCTATGAAACCGTAAGGTGTTCATAGGCAT
rJMSF040N15+ TAAAGGGGGTTCCAACTTCCAACTGCAACATCTATGAAACCGTAAGGTGTTCATAGGCAT
rJMSF038N13+ TAAAGGGGGTTCCAACTTCCAACTGCAACATCTATGAAACCGTAAGGTGTTCATAGGCAT
rJMFF031C03+ TAAAGGGGGTTCCAACTTCCAACTGCAACATCTATGAAACCGTAAGGTGTTCATAGGCAT
rJMFF020N18+ TAAAGGGGGTTCCAACTTCCAACTGCAACATCTATGAAACCGTAAGGTGTTCATAGGCAT
rJMFF044J23+ TAAAGGGGGTTCCAACTTCCAACTGCAACATCTATGAAACCGTAAGGTGTTCATAGGCAT
____________________________________________________________
consensus TAAAGGGGGTTCCAACTTCCAACTGCAACATCTATGAAACCGTAAGGTGTTCATAGGCAT
. : . : . : . : . : . :
rJMSF009B14+ TTGTAATTAGAGAAGAAAATGATAGGGCTTCCTATCATGTCTTCTTCGACATTATAC
rJMSF040N15+ TTGTAATTAGAGAAGAAAATGATAGGGCTTCCTATCATGTCTTCTTCGACATTATACAAG
rJMSF038N13+ TTGTAATTAGAGAAGAAAATGATAGGGCTTCCTATCATGTCTTCTTCGACATTATACAAG
rJMFF031C03+ TTGTAATTAGAGAAGAAAATGATAGGGCTTCCTATCATGTCTTCTTCGACATTATACAAG
rJMFF020N18+ TTGTAATTAGAGAAGAAAATGATAGGGCTTCCTATCATGTCTTCTTCGACATTATACAAG
rJMFF044J23+ TTGTAATTAGAGAAGAAAATGATAGGGCTTCCTATCATGTCTTCTTCGACATTATACAAG
____________________________________________________________
consensus TTGTAATTAGAGAAGAAAATGATAGGGCTTCCTATCATGTCTTCTTCGACATTATACAAG
. : . : . : . : . : . :
rJMSF040N15+ TATACGACCATATGTTGATTAGAATTGTTACAGAATAAGTGATGAGATGCT
rJMSF038N13+ TATACGACCATATGTTGATTAGAATTGTTACAGAATAAGTGATGAGATGCT
rJMFF031C03+ TATACGACCATATGTTGATTAGAATTGTTACAGAATAAGT
rJMFF020N18+ TATACGACCATATGTTGATTAGAATTGTTACAGAATAAGTGATGAGATGCT
rJMFF044J23+ TATACGACCATATGTTGATTAGAATTGTTACAGAATAAGTGATGAGATGCTTCTTGCGGT
____________________________________________________________
consensus TATACGACCATATGTTGATTAGAATTGTTACAGAATAAGTGATGAGATGCTTCTTGCGGT