Contig 012430:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008J13Sequence531010691 (10)ref|XP_009785805.1|3e-62PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Nicotiana sy647012430 (8)gb|ACH73135.1|6e-353-hydroxy-3-methylglutaryl CoA reductase 2, partial [Solanum lycopersicum] gb|A
JMFF019H09Sequence531010691 (10)ref|XP_009588198.1|4e-61PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Nicotiana to692012430 (8)ref|XP_004170310.1|1e-60PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum
JMFF044H04Sequence637010691 (10)gb|AAV54051.1|5e-733-hydroxy-3-methylglutaryl coenzyme A reductase [Eucommia ulmoides]660012430 (8)gb|ACH73135.1|4e-243-hydroxy-3-methylglutaryl CoA reductase 2, partial [Solanum lycopersicum] gb|A
JMFN003F03Sequence563012430 (8)gb|ACH73135.1|4e-153-hydroxy-3-methylglutaryl CoA reductase 2, partial [Solanum lycopersicum] gb|A
JMSF003G17Sequence408010691 (10)ref|XP_009588198.1|3e-53PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Nicotiana to726012430 (8)ref|XP_004170310.1|2e-72PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum
JMSF022G06Sequence605010691 (10)gb|AAV54051.1|4e-643-hydroxy-3-methylglutaryl coenzyme A reductase [Eucommia ulmoides]738012430 (8)ref|XP_004170310.1|7e-63PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum
JMSF044N16Sequence663010691 (10)gb|AAV54051.1|4e-673-hydroxy-3-methylglutaryl coenzyme A reductase [Eucommia ulmoides]521012430 (8)gb|KHN38449.1|5e-133-hydroxy-3-methylglutaryl-coenzyme A reductase [Glycine soja]
JMSF047I14Sequence605010691 (10)ref|XP_006342182.1|4e-57PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Solanum tube783012430 (8)ref|XP_004170310.1|1e-55PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+                                               TAATGCACATGCTGCCAATATTG
                      ____________________________________________________________
consensus                                                  TAATGCACATGCTGCCAATATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          TTTCTGCGATTTTCATAGCTACTGGACAGGATCCAGCACAAAATATAGAAAGTTCTCAGT
rJMFF019H09+                                      GGATCCAGCACAAAATATAGAAAGTTCTCAGT
rJMSF022G06+                            CTACTGGACAGGATCCAGCACAAAATATAGAAAGTTCTCAGT
rJMSF047I14+                                                      ATAGAAAGTTCTCAGT
                      ____________________________________________________________
consensus             TTTCTGCGATTTTCATAGCTACTGGACAGGATCCAGCACAAAATATAGAAAGTTCTCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          GCATTACTATGATGGAGGCTGTGAATGATGGGAAGGATCTTCACATCTCTGTGACCATGC
rJMFF019H09+          GCATTACTATGATGGAGGCTGTGAATGATGGGAAGGATCTTCACATCTCTGTGACCATGC
rJMSF022G06+          GCATTACTATGATGGAGGCTGTGAATGATGGGAAGGATCTTCACATCTCTGTGACCATGC
rJMSF047I14+          GCATTACTATGATGGAGGCTGTGAATGATGGGAAGGATCTTCACATCTCTGTGACCATGC
                      ____________________________________________________________
consensus             GCATTACTATGATGGAGGCTGTGAATGATGGGAAGGATCTTCACATCTCTGTGACCATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          CTTCCATTGAGGTTGGCACCATTGGTGGAGGGACTCATCTTGCTTCTCAATCTGCTTGCC
rJMFF019H09+          CTTCCATTGAGGTTGGCACCATTGGTGGAGGGACTCATCTTGCTTCTCAATCTGCTTGCC
rJMSF022G06+          CTTCCATTGAGGTTGGCACCATTGGTGGAGGGACTCATCTTGCTTCTCAATCTGCTTGCC
rJMFF008J13+                   AGGTTGGCACCATTGGTGGAGGGACTCATCTTGCTTCTCAATCTGCTTGCC
rJMSF047I14+          CTTCCATTGAGGTTGGCACCATTGGTGGAGGGACTCATCTTGCTTCTCAATCTGCTTGCC
rJMFF044H04+                                                                     C
                      ____________________________________________________________
consensus             CTTCCATTGAGGTTGGCACCATTGGTGGAGGGACTCATCTTGCTTCTCAATCTGCTTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          TAAACCTGCTGGGTGTGAAAGGTGCATGCAATGAATCACCAGGGTCAAACTCGAGGCTCC
rJMFF019H09+          TAAACCTGCTGGGTGTGAAAGGTGCATGCAATGAATCACCAGGGTCAAACTCGAGGCTCC
rJMSF022G06+          TAAACCTGCTGGGTGTGAAAGGTGCATGCAATGAATCACCAGGGTCAAACTCGAGGCTCC
rJMFF008J13+          TAAACCTGCTGGGTGTGAAAGGTGCATGCAATGAATTACCAGGGTCAAACTCGAGGCTCC
JMFN003F03-                                                          AACTCGAGGCTCC
rJMSF044N16+                      GTGTGAAAGGTGCATGCAATGAATCACCAGGGTCAAACTCGAGGCTCC
rJMSF047I14+          TAAACCTGCTGGGTGTGAAAGGTGCATGCAATGAATCACCAGGGTCAAACTCGAGGCTCC
rJMFF044H04+          TAAACCTGCTGGGTGTGAAAGGTGCATGCAATGAATTACCAGGGTCAAACTCGAGGCTCC
                      ____________________________________________________________
consensus             TAAACCTGCTGGGTGTGAAAGGTGCATGCAATGAATCACCAGGGTCAAACTCGAGGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          TGGCAACCATTGTTGCTGGTTCAGTCATGGCCGGGGAACTGTCGTTGATGGCTG-CTATT
rJMFF019H09+          TGGCAACCATTGTTGCTGGTTCAGTCATGGCCGGGGAACTGTCGTTGATGGCTG-CTATT
rJMSF022G06+          TGGCAACCATTGTTGCTGGTTCAGTCATGGCCGGGGAACTGTCGTTGATGGCTG-CTATT
rJMFF008J13+          TGGCAACCATTGTTGCTGGTTCAGTCATGGCCGGGGAACTGTCGTTGATGGCTG-CTATT
JMFN003F03-           TGGCAACCATTGTTGCTGGTTCATTCATGGCCGGGGAACTGTCGTTGATGGCTG-CTATT
rJMSF044N16+          TGGCAACCATTGTTGCTGGTTCAGTCATGGCCGGGGAACTGTCGTTGATGGCTGNCTATT
rJMSF047I14+          TGGCAACCATTGTTGCTGGTTCAGTCATGGCCGGGGAACTGTCGTTGATGGCTG-CTATT
rJMFF044H04+          TGGCAACCATTGTTGCTGGTTCAGTCATGGCCGGGGAACTGTCGTTGATGGCTG-CTATT
                      ____________________________________________________________
consensus             TGGCAACCATTGTTGCTGGTTCAGTCATGGCCGGGGAACTGTCGTTGATGGCTG-CTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
rJMFF019H09+          GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
rJMSF022G06+          GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
rJMFF008J13+          GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
JMFN003F03-           GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
rJMSF044N16+          GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
rJMSF047I14+          GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
rJMFF044H04+          GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
                      ____________________________________________________________
consensus             GTATCTGGTCAGCTTGTCAACAGTCATATGAAATACAATAGATCAAGCAAGGATGTGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGACTGAAGAAGTGCCCGATGAG
rJMFF019H09+          GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGACTGAAGAAGTGCCCGATGAG
rJMSF022G06+          GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGACTGAAGAAGTGCCCGATGAG
rJMFF008J13+          GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGACTGAAGAAGTGCCCGATGAG
JMFN003F03-           GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGACTGAAGAAGTGCCCGATGAG
rJMSF044N16+          GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGNCTGAAGAAGTGCCCGATGAG
rJMSF047I14+          GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGACTGAAGAAGTGCCCGATGAG
rJMFF044H04+          GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGACTGAAGAAGTGCCCGATGAG
                      ____________________________________________________________
consensus             GGGGAAGTGCCCGATGAGTTGTTAACGCAAATGGATGTGACTGAAGAAGTGCCCGATGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
rJMFF019H09+          TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
rJMSF022G06+          TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
rJMFF008J13+          TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
JMFN003F03-           TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
rJMSF044N16+          TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
rJMSF047I14+          TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
rJMFF044H04+          TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
                      ____________________________________________________________
consensus             TTGTTAACACAAATGGATGTGACTGAAGAAGTGCCCGATGAGTTGTTAACGCAAATGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          TGTGAAAGGAGTGTTTGAATCTGTAGGTAGATACAGGTAAGTGAGCAGACATTGGCCATG
rJMFF019H09+          TGTGAAAGGAGTGTTTGAATCTGTAGGTAGATACAGGTAAGTGAGCAGACATTGGCCATG
rJMSF022G06+          TGTGAAAGGAGTGTTTGAATCTGTAGGTAGATACAGGTAAGTGAGCAGACATTGGCCATG
rJMFF008J13+          TGTGAAAGGAGTGTTTGAATCTGTAGGTAGATACAGGTAAGTGAGCAGACATTGGCCATG
JMFN003F03-           TGTGAAAGGAGTGTTTGAATCTGTAGGTATATACAGGTAAGTGAGCAGACATTGGCCATG
rJMSF044N16+          TGTGAAAGGAGTGTTTGAATCTGTAGGTAGATACAGGTAAGTGAGCAGACATTGGCCATG
rJMSF047I14+          TGTGAAAGGAGTGTTTGAATCTGTAGGTAGATACAGGTAAGTGAGCAGACATTGGCCATG
rJMFF044H04+          TGTGAAAGGAGTGTTTGAATCTGTAGGTAGATACAGGTAAGTGAGCAGACATTGGCCATG
                      ____________________________________________________________
consensus             TGTGAAAGGAGTGTTTGAATCTGTAGGTAGATACAGGTAAGTGAGCAGACATTGGCCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
rJMFF019H09+          TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
rJMSF022G06+          TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
rJMFF008J13+          TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
JMFN003F03-           TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
rJMSF044N16+          TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
rJMSF047I14+          TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
rJMFF044H04+          TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
                      ____________________________________________________________
consensus             TGAAGCAAGAAAAAGTTGCACCCAATTATTATTATTATTATTATTCTGTGTACCTGATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
rJMFF019H09+          AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
rJMSF022G06+          AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
rJMFF008J13+          AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
JMFN003F03-           AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
rJMSF044N16+          AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
rJMSF047I14+          AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
rJMFF044H04+          AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
                      ____________________________________________________________
consensus             AAGAAGCTACCCTACTGACTTGTGGCCATATATTGCGATCACAAGCAGTGTAGTATCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003G17+          ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTTCTTATTTT                
rJMFF019H09+          ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTTCTTATTTTTTGTTGGTTTTAAGTT
rJMSF022G06+          ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTTCTTATTTTTTGTTGGTTTTAAGTT
rJMFF008J13+          ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTTCTTATTTTTTGTTGGTTTTAAGTT
JMFN003F03-           ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTTCTTATTTTTTGTTGGTTTTAAGTT
rJMSF044N16+          ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTT                        
rJMSF047I14+          ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTTCTTATTTTTTGTTGGTTTTAAGTT
rJMFF044H04+          ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTTCTTATTTTTTGTTGGTTTTAAGTT
                      ____________________________________________________________
consensus             ATCATTCTGTCTGCATAGAGAGTCTCAATTATCGTTCTTATTTTTTGTTGGTTTTAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF019H09+          T                                                           
rJMSF022G06+          TTAAATGTAATTGGTGGTTGGTACTCTATATTCGT                         
rJMFF008J13+          TTAAATGTAATTGGTGGTTGGTACTCTATATTCGTTGGGAAGATGCTT            
JMFN003F03-           TTAAATGTAATTGGTGGTTGGTACTCTATATTCGTTGGGAAGATGCTTTGCAAGGTTATT
rJMSF047I14+          TTAAATGTAATTGGTGGTTGGTACTCTATATTCGTTGGGAAGATGCTTTGCAAGGTTATT
rJMFF044H04+          TTAAATGTAATTGGTGGTTGGTACTCTATATTCGTTGGGAAGATGCTTTGCAAGGTTATT
                      ____________________________________________________________
consensus             TTAAATGTAATTGGTGGTTGGTACTCTATATTCGTTGGGAAGATGCTTTGCAAGGTTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003F03-           ATTGTTTGTTC                                                 
rJMSF047I14+          ATTGTTTGTTC                                                 
rJMFF044H04+          ATTGTTTGTTCXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATTGTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG