| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013B07 | Sequence | 431 | 012429 (8) | ref|XP_009602166.1| | 1e-41 | PREDICTED: mitogen-activated protein kinase kinase 9 [Nicotiana tomentosiformis | 624 | 012429 (8) | gb|ADD62693.1| | 2e-69 | mitogen-activated protein kinase kinase [Capsicum annuum] |
| JMFF013E07 | Sequence | 553 | 005940 (18) | ref|XP_010485236.1| | 1e-105 | PREDICTED: actin-4-like [Camelina sativa] | 147 | 012429 (8) | |||
| JMFF021D08 | Sequence | 592 | 012429 (8) | ref|XP_009602166.1| | 4e-72 | PREDICTED: mitogen-activated protein kinase kinase 9 [Nicotiana tomentosiformis | 750 | 012429 (8) | ref|XP_009602166.1| | 1e-105 | PREDICTED: mitogen-activated protein kinase kinase 9 [Nicotiana tomentosiformis |
| JMFF044G08 | Sequence | 633 | 012429 (8) | ref|XP_009602166.1| | 1e-82 | PREDICTED: mitogen-activated protein kinase kinase 9 [Nicotiana tomentosiformis | 499 | 012429 (8) | gb|ADD62693.1| | 2e-56 | mitogen-activated protein kinase kinase [Capsicum annuum] |
| JMFS169F06 | Sequence | 565 | 012429 (8) | ref|XP_009602166.1| | 1e-73 | PREDICTED: mitogen-activated protein kinase kinase 9 [Nicotiana tomentosiformis | |||||
This contig is upended
. : . : . : . : . : . :
JMFF013B07- AACATTCCGAAATCTCAACGGCAAAAAAAATCAATGGCGCTTGTACGT
JMFF021D08- AACATTCCGAAATCTCAACGGCAAAAAAAATCAATGGCGCTTGTACGT
JMFS169F06- AATGGCGCTTGTACGT
JMFF044G08- AACATTCCGAAATCTCAACGGCAAAAAAAATCAATGGCGCTTGTACGT
____________________________________________________________
consensus AACATTCCGAAATCTCAACGGCAAAAAAAATCAATGGCGCTTGTACGT
. : . : . : . : . : . :
JMFF013B07- GAACGGCGACAGATCAATCTCCGCCTCCCTCTGCCGGAACCCTCCCAACGCCGCCCTCGT
JMFF021D08- GAACGGCGACAGATCAATCTCCGCCTCCCTCTGCCGGAACCCTCCCAACGCCGCCCTCGT
JMFS169F06- GAACGGCGACAGATCAATCTCCGCCTCCCTCTGCCGGAACCCTCCCAACGCCGCCCTCGT
JMFF044G08- GAACGGCGACAGATCAATCTCCGCCTCCCTCTGCCGGAACCCTCCCAACGCCGCCCTCGT
____________________________________________________________
consensus GAACGGCGACAGATCAATCTCCGCCTCCCTCTGCCGGAACCCTCCCAACGCCGCCCTCGT
. : . : . : . : . : . :
JMFF013B07- TTCCCCTTGCCTCTCCCGCCTTCTTCTAACACGGCCGGCGCTGCTCCTTCTTCTTCAACA
JMFF021D08- TTCCCCTTGCCTCTCCCGCCTTCTTCTAACACGGCCGGCGCTGCTCCTTCTTCTTCAACA
JMFS169F06- TTCCCCTTGCCTCTCCCGCCTTCTTCTAACACGGCCGGCGCTGCTCCTTCTTCTTCAACA
JMFF044G08- TTCCCCTTGCCTCTCCCGCCTTCTTCTAACACGGCCGGCGCTGCTCCTTCTTCTTCAACA
____________________________________________________________
consensus TTCCCCTTGCCTCTCCCGCCTTCTTCTAACACGGCCGGCGCTGCTCCTTCTTCTTCAACA
. : . : . : . : . : . :
JMFF013B07- ACCACAACTTCCTCCGCCGCGTTCTCCATGTCGGACTTCGAGAAACTCCACGTCCTCGGC
JMFF021D08- ACCACAACTTCCTCCGCCGCGTTCTCCATGTCGGACTTCGAGAAACTCCACGTCCTCGGC
JMFS169F06- ACCACAACTTCCTCCGCCGCGTTCTCCATGTCGGACTTCGAGAAACTCCACGTCCTCGGC
JMFF044G08- ACCACAACTTCCTCCGCCGCGTTCTCCATGTCGGACTTCGAGAAACTCCACGTCCTCGGC
____________________________________________________________
consensus ACCACAACTTCCTCCGCCGCGTTCTCCATGTCGGACTTCGAGAAACTCCACGTCCTCGGC
. : . : . : . : . : . :
JMFF013B07- CACGGCAACGGCGGCACAGTTTACAAAGTGCGCCACAAGCGGACTTCGGCGGTCTACGCC
JMFF021D08- CACGGCAACGGCGGCACAGTTTACAAAGTGCGCCACAAGCGGACTTCGGCGGTCTACGCC
JMFS169F06- CACGGCAACGGCGGCACAGTTTACAAAGTGCGCCACAAGCGGACTTCGGCGGTCTACGCC
JMFF044G08- CACGGCAACGGCGGCACAGTTTACAAAGTGCGCCACAAGCGGACTTCGGCGGTCTACGCC
____________________________________________________________
consensus CACGGCAACGGCGGCACAGTTTACAAAGTGCGCCACAAGCGGACTTCGGCGGTCTACGCC
. : . : . : . : . : . :
JMFF013B07- CTCAAAGTCGTCCACGGCGACAGCGACCCCGCCGTCCGCCGCCAGATCTTCCGCGAGATC
JMFF021D08- CTCAAAGTCGTCCACGGCGACAGCGACCCCGCCGTCCGCCGCCAGATCTTCCGCGAGATC
JMFS169F06- CTCAAAGTCGTCCACGGCGACAGCGACCCCGCCGTCCGCCGCCAGATCTTCCGCGAGATC
JMFF044G08- CTCAAAGTCGTCCACGGCGACAGCGACCCCGCCGTCCGCCGCCAGATCTTCCGCGAGATC
____________________________________________________________
consensus CTCAAAGTCGTCCACGGCGACAGCGACCCCGCCGTCCGCCGCCAGATCTTCCGCGAGATC
. : . : . : . : . : . :
JMFF013B07- TCCATCCTCCGGTCCACGGACTCGCCGCACGTGATCAAGTGTCACGGCACCTCCGATATT
JMFF021D08- TCCATCCTCCGGTCCACGGACTCGCCGCACGTGATCAAGTGTCACGGCACCTCCGATATT
JMFS169F06- TCCATCCTCCGGTCCACGGACTCGCCGCACGTGATCAAGTGTCACGGCACCTCCGATATT
JMFF044G08- TCCATCCTCCGGTCCACGGACTCGCCGCACGTGATCAAGTGTCACGGCACCTCCGATATT
____________________________________________________________
consensus TCCATCCTCCGGTCCACGGACTCGCCGCACGTGATCAAGTGTCACGGCACCTCCGATATT
. : . : . : . : . : . :
JMFF013B07- CCCGGCGGCGACATCGCGATCCT
JMFF021D08- CCCGGCGGCGACATCGCGATCCTGATGGAGTACATGGACGCCGGAACCC-TAGAAAGCTT
JMFS169F06- CCCGGCGGCGACATCGCGATCCTGATGGAGTACATGGACGCCGGAACCC-TAGAAAGCTT
JMFF044G08- CCCGGCGGCGACATCGCGATCCTGATGGAGTACATGGACGCCGGAACCC-TAGAAAGCTT
rJMFF021D08+ TGATGGAGTACATGGACGCCGGAACCCTTAGAAAGCTT
____________________________________________________________
consensus CCCGGCGGCGACATCGCGATCCTGATGGAGTACATGGACGCCGGAACCC-TAGAAAGCTT
. : . : . : . : . : . :
JMFF021D08- GATGAAATCATCGGAGAAGAAAGTGTTCTCTGAAGCCTCCCTGGCGAAAATCGCTAAGCA
JMFS169F06- GATGAAATCATCGGAGAAGAAAGTGTTCTCTGAAGCCTCCCTGGCGAAAATCGCTAAGCA
JMFF044G08- GATGAAATCATCGGAGAAGAAAGTGTTCTCTGAAGCCTCCCTGGCGAAAATCGCTAAGCA
rJMFF021D08+ GATGAAATCATCGGAGAAGAAAGTGTTCTCTGAAGCCTCCCTGGCGAAAATCGCTAAGCA
____________________________________________________________
consensus GATGAAATCATCGGAGAAGAAAGTGTTCTCTGAAGCCTCCCTGGCGAAAATCGCTAAGCA
. : . : . : . : . : . :
JMFF021D08- AGTGCTCCTCGGCCTCGATTACTTGCACTCTCACAAAATCATCCACCGAGATCTCAAGCC
JMFS169F06- AGTGCTCCTCGGCCTCGATTACTTGCACTCTCACAAAATCATCCACCGAGATCTCAAGCC
JMFF044G08- AGTGCTCCTCGGCCTCGATTACTTGCACTCTCACAAAATCATCCACCGAGATCTCAAGCC
rJMFF021D08+ AGTGCTCCTCGGCCTCGATTACTTGCACTCTCACAAAATCATCCACCGAGATCTCAAGCC
rJMFF013B07+ GATTACTTGCACTCTCACAAAATCATCCACCGAGATCTCAAGCC
____________________________________________________________
consensus AGTGCTCCTCGGCCTCGATTACTTGCACTCTCACAAAATCATCCACCGAGATCTCAAGCC
. : . : . : . : . : . :
JMFF021D08- GGCGA
JMFS169F06- GGCGAACCTT
JMFF044G08- GGCGAACCTTCTGGTTAATCGTGAGATGGAGGTGAAAATAGCGGAC
rJMFF021D08+ GGCGAACCTTCTGGTTAATCGTGAGATGGAGGTGAAAATAGCGGACTTCGGCGTGAGTAA
rJMFF013B07+ GGCGAACCTTCTGGTTAATCGTGAGATGGAGGTGAAAATAGCGGACTTCGGCGTGAGTAA
____________________________________________________________
consensus GGCGAACCTTCTGGTTAATCGTGAGATGGAGGTGAAAATAGCGGACTTCGGCGTGAGTAA
. : . : . : . : . : . :
rJMFF021D08+ AATGAT-GTGCCGGAGTTTGGACCCCTGCAACTCATACGTCGGAACTTGCGCCTATATGA
rJMFF013B07+ AATGATCGTGCCGGAGTTTGGACCCCTGCAACTCATACGTCGGAACTTGCGCCTATATGA
____________________________________________________________
consensus AATGATCGTGCCGGAGTTTGGACCCCTGCAACTCATACGTCGGAACTTGCGCCTATATGA
. : . : . : . : . : . :
rJMFF021D08+ GCCCGGAGAGGTTCGATCCGGACACAAACGGCGGGAATTACAACGGTTACGCCGGAGACA
rJMFF013B07+ GCCCGGAGAGGTTCGATCCGGACACAAACGGCGGGAATTACAACGGTTACGCCGGAGACA
____________________________________________________________
consensus GCCCGGAGAGGTTCGATCCGGACACAAACGGCGGGAATTACAACGGTTACGCCGGAGACA
. : . : . : . : . : . :
rJMFF021D08+ TCTGGAGCTTGGGGCTGACCCTGATGGAGCTTTACATGGGCTACTTTCCCTTCCTGCACG
rJMFF013B07+ TCTGGAGCTTGGGGCTGACCCTGATGGAGCTTTACATGGGCTACTTTCCCTTCCTGCACG
____________________________________________________________
consensus TCTGGAGCTTGGGGCTGACCCTGATGGAGCTTTACATGGGCTACTTTCCCTTCCTGCACG
. : . : . : . : . : . :
rJMFF021D08+ AGGGGCAGAGGCCCGACTGGGCAACGCTAATGTGCGCCATATGTTTCTGCGAACCGCCCA
rJMFF013B07+ AGGGGCAGAGGCCCGACTGGGCAACGCTAATGTGCGCCATATGTTTCTGCGAACCGCCCA
rJMFF044G08+ CTAATGTGCGCCATATGTTTTTGCGAACCGCCCA
____________________________________________________________
consensus AGGGGCAGAGGCCCGACTGGGCAACGCTAATGTGCGCCATATGTTTCTGCGAACCGCCCA
. : . : . : . : . : . :
rJMFF021D08+ ACTTGCCGGCCGGAGCTTCACCGGAGTTCAAGGACTTTATAGATTCCTGTTTGCAGAAGG
rJMFF013B07+ ACTTGCCGGCCGGAGCTTCACCGGAGTTCAAGGACTTTATAGATTCCTGTTTGCAGAAGG
rJMFF044G08+ ACTTGCCGGCCGGAGCTTCACCGGAGTTCAAGGACTTTATAGATTCCTGTTTGCAGAAGG
____________________________________________________________
consensus ACTTGCCGGCCGGAGCTTCACCGGAGTTCAAGGACTTTATAGATTCCTGTTTGCAGAAGG
. : . : . : . : . : . :
rJMFF013E07+ TGCAACANCNGTTTGTGAGGGATATTG
rJMFF021D08+ AATCCAGTAAGAGGTGGAGCACGCAACAACTTCTGCAACACCCGTTTGTGAGGGATATTG
rJMFF013B07+ AATCCAGTAAGAGGTGGAGCACGCAACAACTTCTGCAACACCCGTTTGTGAGGGATATTG
rJMFF044G08+ AATCCAGTAAGAGGTGGAGCACGCAACAACTTTTGCAACACCCGTTTGTGAGGGATATTG
____________________________________________________________
consensus AATCCAGTAAGAGGTGGAGCACGCAACAACTTCTGCAACACCCGTTTGTGAGGGATATTG
. : . : . : . : . : . :
rJMFF013E07+ AATTNAAATNNTAAATNAATTNANAAAATTAAAAATAAATAAAAAAGAGTAATTCNTGAA
rJMFF021D08+ AATTCAAATCCCAAATCAATTCACAAAATTAAAAATAAATAAAAAAGAGTAATTCCTGAA
rJMFF013B07+ AATTCAAATCCCAAATCAATTCACAAAATTAAAAATAAATAAAAAAGAGTAATTCCTGAA
rJMFF044G08+ AATTCAAATCCCAAATCAATTCCCAAAATTAAAAATAAATAAAAAAGAGTAATTCCTGAA
____________________________________________________________
consensus AATTCAAATCCCAAATCAATTCACAAAATTAAAAATAAATAAAAAAGAGTAATTCCTGAA
. : . : . : . : . : . :
rJMFF013E07+ TTTNTTTGTATATACAGAANTTCNTTTTTTGAATNTTTGATTCAGTTGGATGTA
rJMFF021D08+ TTTCTTTGTATATACAGAACTTCCTTTTTTGAATCTTTGATTCAGTTGGATGTATATTCT
rJMFF013B07+ TTTCTTTGTATATACAGAACTTCCTTTTTTGAATCTTTGATTCAGTTGGATGTATATTCT
rJMFF044G08+ TTTCTTTGTATATACAGAACTTCCTTTTTTGAATCTTTGATTCAGTTGGATGTATATTTT
____________________________________________________________
consensus TTTCTTTGTATATACAGAACTTCCTTTTTTGAATCTTTGATTCAGTTGGATGTATATTCT
. : . : . : . : . : . :
rJMFF021D08+ TCTTCAATGAATCAAATGGATCCGAATCTGCAGTA
rJMFF013B07+ TCTTCAATGAATCAAATGGATCCGAATCTGCAGTA
rJMFF044G08+ TCTTCAATGAATCAAATGGATCCGAATCTGCAGTATTTTTACTGTAGATATTGAGAGATT
____________________________________________________________
consensus TCTTCAATGAATCAAATGGATCCGAATCTGCAGTATTTTTACTGTAGATATTGAGAGATT