Contig 012424:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012D11Sequence602011783 (30)ref|XP_002278997.1|7e-54PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] [Vitis vinife760012424 (8)ref|XP_008356761.1|3e-66PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Malus d
JMFF017G07Sequence545012433 (17)gb|ADH04383.1|5e-119cellulose synthase 3B [Salix sachalinensis]517012424 (8)ref|XP_010228012.1|8e-18PREDICTED: probable cellulose synthase A catalytic subunit 2 [UDP-forming] isof
JMFF022E19Sequence404011783 (30)ref|XP_004229630.1|5e-10PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] [Solanum lyco581012424 (8)ref|XP_007133819.1|3e-32hypothetical protein PHAVU_011G211500g [Phaseolus vulgaris] gb|ESW05813.1| hypot
JMFF035C17Sequence570011783 (30)gb|AFY99081.1|2e-40cellulose synthase, partial [Lobelia erinus]716012424 (8)ref|XP_008356761.1|5e-55PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Malus d
JMFF037B20Sequence226012424 (8)ref|XP_010278977.1|1e-08PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Nelumbo
JMFF043N06Sequence666011783 (30)gb|ACS94418.1|3e-126cellulose synthase A [Leucaena leucocephala]574012424 (8)ref|XP_009799381.1|9e-25PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] [Nicotiana sy
JMFF045A04Sequence634015307ref|XP_009354747.1|2e-57PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Pyrus x463012424 (8)ref|XP_010278977.1|2e-19PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Nelumbo
JMSF047A02Sequence695011783 (30)ref|XP_007220288.1|8e-73hypothetical protein PRUPE_ppa000593mg [Prunus persica] gb|EMJ21487.1| hypotheti756012424 (8)ref|XP_008356761.1|2e-63PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Malus d

Alignment

This contig is upended


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rJMFF012D11+                                                              AAGGCGTC
rJMSF047A02+                                                                   GTC
                      ____________________________________________________________
consensus                                                                 AAGGCGTC
 
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rJMFF012D11+          AGATGAAGATGGGGACTTTGCAGAACTCTACCTGTTCAAATGGACTACTCTTTTGATACC
rJMFF035C17+                                             TCAAATGGACTACTCTTTTGATACC
rJMSF047A02+          AGATGNAGATGGGGACTTTGCAGAACTCTACCTGTTCAAATGGACTACTCTTTTGATACC
                      ____________________________________________________________
consensus             AGATGAAGATGGGGACTTTGCAGAACTCTACCTGTTCAAATGGACTACTCTTTTGATACC
 
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rJMFF012D11+          TCCTACAACACTCCTCATCATAAATCTGGTGGGTGTTGTTGCTGGAATCTCATATGCCGT
rJMFF035C17+          TCNTACAACACTCCTCATCATAAATCTGGTGGGTGTTGTTGCTGGAATCTCATATGCCGT
rJMSF047A02+          TCCTACAACACTCCTCATCATAAATCTGGTGGGTGTTGTTGCTGGAATCTCATATGCCGT
                      ____________________________________________________________
consensus             TCCTACAACACTCCTCATCATAAATCTGGTGGGTGTTGTTGCTGGAATCTCATATGCCGT
 
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rJMFF012D11+          CAACAGTGGTTACCAGTCATGGGGTCCTCTCTTCGGAAAACTATTCTTCGCCTTCTGGGT
rJMFF035C17+          CAACAGTGGTTACCAGTCATGGGGTCCTCTCTTCGGAAAACTATTCTTCGCCTTCTGGGT
rJMFF017G07+                                                           GCCTTCTGGGT
rJMSF047A02+          CAACAGTGGTTACCAGTCATGGGGTCCTCTCTTCGGAAAACTATTCTTCGCCTTCTGGGT
rJMFF022E19+                                                                 TGGGT
                      ____________________________________________________________
consensus             CAACAGTGGTTACCAGTCATGGGGTCCTCTCTTCGGAAAACTATTCTTCGCCTTCTGGGT
 
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rJMFF045A04+                                                   GCCAGAACCGTACACCCA-
rJMFF012D11+          GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
rJMFF035C17+          GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
rJMFF017G07+          GATNGTTCATCTCTNCCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCAC
rJMSF047A02+          GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
rJMFF022E19+          GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
rJMFF043N06+                                  CAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
                      ____________________________________________________________
consensus             GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
 
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rJMFF045A04+          CTATGGTCGTGGTGTGGTCTATTTTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF012D11+          CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF035C17+          CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF017G07+          CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF037B20+                                         CTCCATTTTCTNTTTGTTATGGGTGAGGA
rJMSF047A02+          CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF022E19+          CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF043N06+          CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
                      ____________________________________________________________
consensus             CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
 
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rJMFF045A04+          TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF012D11+          TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF035C17+          TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF017G07+          TNGATCCATTCANTACCTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTANTAATTGC
rJMFF037B20+          TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGN
rJMSF047A02+          TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF022E19+          TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF043N06+          TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
                      ____________________________________________________________
consensus             TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
 
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rJMFF045A04+          TAGGTTAACACCACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF012D11+          TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF035C17+          TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF017G07+          TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF037B20+          TAGGTTAACANCANGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATNCCAGTTCAATC
rJMSF047A02+          TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF022E19+          TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF043N06+          TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
                      ____________________________________________________________
consensus             TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
 
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rJMFF045A04+          TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTTTCCCCCATCT
rJMFF012D11+          TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF035C17+          TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF017G07+          TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF037B20+          TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATAT
rJMSF047A02+          TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF022E19+          TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF043N06+          TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
                      ____________________________________________________________
consensus             TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
 
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rJMFF045A04+          GGCTATTTTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF012D11+          GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF035C17+          GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF017G07+          GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF037B20+          GGGTNTTCTACNTGTTTT                                          
rJMSF047A02+          GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF022E19+          GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF043N06+          GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
                      ____________________________________________________________
consensus             GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
 
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rJMFF045A04+          ATTTTTTTGTTTCAATACCAAACAGAATTTCCACTCCCCTGCCCCTTTAGCTTGTATACT
rJMFF012D11+          ATTTTCTTGTTTCAATACCAAACAGAATTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMFF035C17+          ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMFF017G07+          ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMSF047A02+          ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMFF022E19+          ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMFF043N06+          ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
                      ____________________________________________________________
consensus             ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
 
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rJMFF045A04+          CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF012D11+          CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF035C17+          CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF017G07+          CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMSF047A02+          CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF022E19+          CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF043N06+          CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
                      ____________________________________________________________
consensus             CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
 
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rJMFF045A04+          GAGCTTGTATAATGCCCCTATTCATT                                  
rJMFF012D11+          GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
rJMFF035C17+          GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
rJMFF017G07+          GAGCTTGTATAATGCACCTATTCATT                                  
rJMSF047A02+          GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
rJMFF022E19+          GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
rJMFF043N06+          GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
                      ____________________________________________________________
consensus             GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
 
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rJMFF012D11+          TATTCATTTACAATCATCCCCTTGAATTCAGTTA                          
rJMFF035C17+          TATTCATTTACAATCATCCCCT                                      
rJMSF047A02+          TATTCATTTACAATCATCCCCTTGAATTCAGTTA                          
rJMFF022E19+          TATTCATTTACAATCATCCCCTTGAATTCAGTTA                          
rJMFF043N06+          TATTCATTTACAATATTCCCCTTGAATTCAGTTATGATAATATAAATAGTTGTGTTGATC
                      ____________________________________________________________
consensus             TATTCATTTACAATCATCCCCTTGAATTCAGTTATGATAATATAAATAGTTGTGTTGATC