Contig 012424:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012D11Sequence602011783 (30)ref|XP_002278997.1|7e-54PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] [Vitis vinife760012424 (8)ref|XP_008356761.1|3e-66PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Malus d
JMFF017G07Sequence545012433 (17)gb|ADH04383.1|5e-119cellulose synthase 3B [Salix sachalinensis]517012424 (8)ref|XP_010228012.1|8e-18PREDICTED: probable cellulose synthase A catalytic subunit 2 [UDP-forming] isof
JMFF022E19Sequence404011783 (30)ref|XP_004229630.1|5e-10PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] [Solanum lyco581012424 (8)ref|XP_007133819.1|3e-32hypothetical protein PHAVU_011G211500g [Phaseolus vulgaris] gb|ESW05813.1| hypot
JMFF035C17Sequence570011783 (30)gb|AFY99081.1|2e-40cellulose synthase, partial [Lobelia erinus]716012424 (8)ref|XP_008356761.1|5e-55PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Malus d
JMFF037B20Sequence226012424 (8)ref|XP_010278977.1|1e-08PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Nelumbo
JMFF043N06Sequence666011783 (30)gb|ACS94418.1|3e-126cellulose synthase A [Leucaena leucocephala]574012424 (8)ref|XP_009799381.1|9e-25PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] [Nicotiana sy
JMFF045A04Sequence634015307ref|XP_009354747.1|2e-57PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Pyrus x463012424 (8)ref|XP_010278977.1|2e-19PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Nelumbo
JMSF047A02Sequence695011783 (30)ref|XP_007220288.1|8e-73hypothetical protein PRUPE_ppa000593mg [Prunus persica] gb|EMJ21487.1| hypotheti756012424 (8)ref|XP_008356761.1|2e-63PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Malus d

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF012D11+ AAGGCGTC
rJMSF047A02+ GTC
                      ____________________________________________________________
consensus AAGGCGTC
 
. : . : . : . : . : . :
rJMFF012D11+ AGATGAAGATGGGGACTTTGCAGAACTCTACCTGTTCAAATGGACTACTCTTTTGATACC
rJMFF035C17+ TCAAATGGACTACTCTTTTGATACC
rJMSF047A02+ AGATGNAGATGGGGACTTTGCAGAACTCTACCTGTTCAAATGGACTACTCTTTTGATACC
                      ____________________________________________________________
consensus AGATGAAGATGGGGACTTTGCAGAACTCTACCTGTTCAAATGGACTACTCTTTTGATACC
 
. : . : . : . : . : . :
rJMFF012D11+ TCCTACAACACTCCTCATCATAAATCTGGTGGGTGTTGTTGCTGGAATCTCATATGCCGT
rJMFF035C17+ TCNTACAACACTCCTCATCATAAATCTGGTGGGTGTTGTTGCTGGAATCTCATATGCCGT
rJMSF047A02+ TCCTACAACACTCCTCATCATAAATCTGGTGGGTGTTGTTGCTGGAATCTCATATGCCGT
                      ____________________________________________________________
consensus TCCTACAACACTCCTCATCATAAATCTGGTGGGTGTTGTTGCTGGAATCTCATATGCCGT
 
. : . : . : . : . : . :
rJMFF012D11+ CAACAGTGGTTACCAGTCATGGGGTCCTCTCTTCGGAAAACTATTCTTCGCCTTCTGGGT
rJMFF035C17+ CAACAGTGGTTACCAGTCATGGGGTCCTCTCTTCGGAAAACTATTCTTCGCCTTCTGGGT
rJMFF017G07+ GCCTTCTGGGT
rJMSF047A02+ CAACAGTGGTTACCAGTCATGGGGTCCTCTCTTCGGAAAACTATTCTTCGCCTTCTGGGT
rJMFF022E19+ TGGGT
                      ____________________________________________________________
consensus CAACAGTGGTTACCAGTCATGGGGTCCTCTCTTCGGAAAACTATTCTTCGCCTTCTGGGT
 
. : . : . : . : . : . :
rJMFF045A04+ GCCAGAACCGTACACCCA-
rJMFF012D11+ GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
rJMFF035C17+ GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
rJMFF017G07+ GATNGTTCATCTCTNCCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCAC
rJMSF047A02+ GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
rJMFF022E19+ GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
rJMFF043N06+ CAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
                      ____________________________________________________________
consensus GATTGTTCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACCGTACACCCA-
 
. : . : . : . : . : . :
rJMFF045A04+ CTATGGTCGTGGTGTGGTCTATTTTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF012D11+ CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF035C17+ CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF017G07+ CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF037B20+ CTCCATTTTCTNTTTGTTATGGGTGAGGA
rJMSF047A02+ CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF022E19+ CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
rJMFF043N06+ CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
                      ____________________________________________________________
consensus CTATTGTCGTTGTGTGGTCTATTCTTCTTGCCTCCATTTTCTCTTTGTTATGGGTGAGGA
 
. : . : . : . : . : . :
rJMFF045A04+ TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF012D11+ TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF035C17+ TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF017G07+ TNGATCCATTCANTACCTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTANTAATTGC
rJMFF037B20+ TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGN
rJMSF047A02+ TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF022E19+ TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
rJMFF043N06+ TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
                      ____________________________________________________________
consensus TCGATCCATTCACTA-CTAGGGTTACAGGCCCAGACGTTCAGGAGTGTGGTATTAATTGC
 
. : . : . : . : . : . :
rJMFF045A04+ TAGGTTAACACCACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF012D11+ TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF035C17+ TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF017G07+ TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF037B20+ TAGGTTAACANCANGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATNCCAGTTCAATC
rJMSF047A02+ TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF022E19+ TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
rJMFF043N06+ TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
                      ____________________________________________________________
consensus TAGGTTAACAACACGAATCAACGATGAGAAGCTGGAGGGCTGTCAAATGCCAGTTCAATC
 
. : . : . : . : . : . :
rJMFF045A04+ TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTTTCCCCCATCT
rJMFF012D11+ TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF035C17+ TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF017G07+ TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF037B20+ TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATAT
rJMSF047A02+ TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF022E19+ TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
rJMFF043N06+ TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
                      ____________________________________________________________
consensus TGGATAAGCCAGAGAGTCACGGAGGTCAGTTCAATTTGCAGGCATTTTTCTCCCCCATCT
 
. : . : . : . : . : . :
rJMFF045A04+ GGCTATTTTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF012D11+ GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF035C17+ GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF017G07+ GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF037B20+ GGGTNTTCTACNTGTTTT
rJMSF047A02+ GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF022E19+ GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
rJMFF043N06+ GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
                      ____________________________________________________________
consensus GGCTATTCTACCTGTTTTGTTTATGTGAAATTTGGTTGTGAAGAATTAGAAATGTGAAAT
 
. : . : . : . : . : . :
rJMFF045A04+ ATTTTTTTGTTTCAATACCAAACAGAATTTCCACTCCCCTGCCCCTTTAGCTTGTATACT
rJMFF012D11+ ATTTTCTTGTTTCAATACCAAACAGAATTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMFF035C17+ ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMFF017G07+ ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMSF047A02+ ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMFF022E19+ ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
rJMFF043N06+ ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
                      ____________________________________________________________
consensus ATTTTCTTGTTTCAATACCAAACAGAACTTCCACTCCCCTGCCCCTCTAGCTTGTATACT
 
. : . : . : . : . : . :
rJMFF045A04+ CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF012D11+ CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF035C17+ CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF017G07+ CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMSF047A02+ CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF022E19+ CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
rJMFF043N06+ CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
                      ____________________________________________________________
consensus CAGAAAGAGAGTGTTACATTTACATATTTATTCCATTTATATATAGGGCGGAAATGCTGG
 
. : . : . : . : . : . :
rJMFF045A04+ GAGCTTGTATAATGCCCCTATTCATT
rJMFF012D11+ GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
rJMFF035C17+ GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
rJMFF017G07+ GAGCTTGTATAATGCACCTATTCATT
rJMSF047A02+ GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
rJMFF022E19+ GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
rJMFF043N06+ GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
                      ____________________________________________________________
consensus GAGCTTGTATAATGCACCTATTCATTTAATTTAATGGCTTTATGCCTCAGTGTATCAATG
 
. : . : . : . : . : . :
rJMFF012D11+ TATTCATTTACAATCATCCCCTTGAATTCAGTTA
rJMFF035C17+ TATTCATTTACAATCATCCCCT
rJMSF047A02+ TATTCATTTACAATCATCCCCTTGAATTCAGTTA
rJMFF022E19+ TATTCATTTACAATCATCCCCTTGAATTCAGTTA
rJMFF043N06+ TATTCATTTACAATATTCCCCTTGAATTCAGTTATGATAATATAAATAGTTGTGTTGATC
                      ____________________________________________________________
consensus TATTCATTTACAATCATCCCCTTGAATTCAGTTATGATAATATAAATAGTTGTGTTGATC