Contig 012420:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020N22Sequence433012420 (5)emb|CBI36722.3|2e-18unnamed protein product [Vitis vinifera]
JMFF022I06Sequence481003016 (3)ref|XP_009787473.1|4e-50PREDICTED: F-box protein SKIP16 [Nicotiana sylvestris]720012420 (5)ref|XP_011091637.1|7e-74PREDICTED: F-box protein SKIP16 [Sesamum indicum]
JMFF042N15Sequence490012420 (5)ref|XP_011091637.1|4e-23PREDICTED: F-box protein SKIP16 [Sesamum indicum]489012420 (5)ref|XP_011091637.1|4e-23PREDICTED: F-box protein SKIP16 [Sesamum indicum]
JMFF043I12Sequence633003016 (3)ref|XP_009787473.1|8e-74PREDICTED: F-box protein SKIP16 [Nicotiana sylvestris]649012420 (5)ref|XP_011091637.1|2e-47PREDICTED: F-box protein SKIP16 [Sesamum indicum]

Alignment

This contig is upended


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rJMFF022I06+                                                   GCACTAGAAGCATCAGTCA
                      ____________________________________________________________
consensus                                                      GCACTAGAAGCATCAGTCA
 
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rJMFF022I06+          TTTTCCAGAAGAACCTCCACTTTGTTCCACTGCTATGACGAATGGTGTGAAGGTTCGTGC
                      ____________________________________________________________
consensus             TTTTCCAGAAGAACCTCCACTTTGTTCCACTGCTATGACGAATGGTGTGAAGGTTCGTGC
 
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rJMFF022I06+          ATCTGCTGTGCTTGTCCCAGAGTGCTGCAACCTTGAACATGATTCTGAGAAATATATGTT
                      ____________________________________________________________
consensus             ATCTGCTGTGCTTGTCCCAGAGTGCTGCAACCTTGAACATGATTCTGAGAAATATATGTT
 
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rJMFF022I06+          NGCATATTCTATCCGCATGTCCCTTTCACCTGAAGGATGCATCTTAAATGGAATGAAGTT
rJMFF043I12+                     TCCGCATGTCCCTTTCACCTGAAGGATGCATCTTAAATGGAATGAAGTT
                      ____________________________________________________________
consensus             NGCATATTCTATCCGCATGTCCCTTTCACCTGAAGGATGCATCTTAAATGGAATGAAGTT
 
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rJMFF022I06+          TAGTTCTTGCCAATTGTATCGTAGACGATGGATCATCCGTGCCAATGATGCTATTGTAGA
rJMFF043I12+          TAGTTCTTGCCAATTGTATCGTAGACGATGGATCATCCGTGCCAATGATGCTATTGTAGA
                      ____________________________________________________________
consensus             TAGTTCTTGCCAATTGTATCGTAGACGATGGATCATCCGTGCCAATGATGCTATTGTAGA
 
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rJMFF020N22+                   TGGAGAAGCAGTAATAGGAAAGTNTCCACTTGTACGGCNTGGTGAAGAAGA
rJMFF022I06+          TGATATTAGTGGAGAAGCAGTAATAGGAAAGTTTCCACTTCTACGGCCTGGTGAAGAAGA
JMFF042N15-                    TGGAGAAGCAGTAATAGGAAAGTTTCCACTTCTACGGCCTGGTGAAGAAGA
rJMFF042N15+                   TGGAGAAGCAGTAATAGGAAAGTTTCCACTTCTACGGCCTGGTGAAGAAGA
rJMFF043I12+          TGATATTAGTGGAGAAGCAGTAATAGGAAAGTTTCCACTTCTACGGCCTGGTGAAGAAGA
                      ____________________________________________________________
consensus             TGATATTAGTGGAGAAGCAGTAATAGGAAAGTTTCCACTTCTACGGCCTGGTGAAGAAGA
 
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rJMFF020N22+          GTTNGTATANGAGAGCTGCACACCTCTATCGTCTTCATCAGGTTCAATCGAAGGTTCTTT
rJMFF022I06+          GTTTGTATATGAGAGCTGCACACCTCTATCGTCTTCATCAGGTTCAATTGAAGGTTCTTT
JMFF042N15-           GTTTGTATATGAGAGCTGCACACCTCTATCGTCTTCATCAGGTTCAATTGAAGGTTCTTT
rJMFF042N15+          GTTTGTATATGAGAGCTGCACACCTCTATCGTCTTCATCAGGTTCAATTGAAGGTTCTTT
rJMFF043I12+          GTTTGTATATGAGAGCTGCACACCTCTATCGTCTTCATCAGGTTCAATTGAAGGTTCTTT
                      ____________________________________________________________
consensus             GTTTGTATATGAGAGCTGCACACCTCTATCGTCTTCATCAGGTTCAATTGAAGGTTCTTT
 
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rJMFF020N22+          CACTTTTGTCCCTGGACGATTAGCAGAGCCAAAAGGCAGTCCATTTGAAGTNGAAGTGGC
rJMFF022I06+          CACTTTTGTCCCTGGACGATTAGCAGAGCCAAAAGGCAGTCCATTTGAAGTCGAAGTGGC
JMFF042N15-           CACTTTTGTCCCTGGACGATTAGCAGAGCCAAAAGGCAGTCCATTTGAAGTCGAAGTGGC
rJMFF042N15+          CACTTTTGTCCCTGGACGATTAGCAGAGCCAAAAGGCAGTCCATTTGAAGTCGAAGTGGC
rJMFF043I12+          CACTTTTGTCCCTGGACGATTAGCAGAGCCAAAAGGCAGTCCATTTGAAGTCGAAGTGGC
                      ____________________________________________________________
consensus             CACTTTTGTCCCTGGACGATTAGCAGAGCCAAAAGGCAGTCCATTTGAAGTCGAAGTGGC
 
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rJMFF020N22+          AAGATTTCCTCTTCAGTCGCCAGACTACGTTTTCNGATTGCAATTGTGTGCGCAATCCAC
rJMFF022I06+          AAGATTTCCTCTTCAGTTGCCAGACTACGTTTTCTGATTGCAATTGTGTGCGCAATCCAC
JMFF042N15-           AAGATTTCCTCTTCAGTTGCCAGACTACGTTTTCTGATTGCAATTGTGTGCGCAATCCAC
rJMFF042N15+          AAGATTTCCTCTTCAGTTGCCAGACTACGTTTTCTGATTGCAATTGTGTGCGCAATCCAC
rJMFF043I12+          AAGATTTCCTCTTCAGTTGCCAGACTACGTTTTCTGATTGCAATTGTGTGCGCAATCCAC
                      ____________________________________________________________
consensus             AAGATTTCCTCTTCAGTTGCCAGACTACGTTTTCTGATTGCAATTGTGTGCGCAATCCAC
 
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rJMFF020N22+          TNTTTAAGTTGAGCAATGGTATTAGTATGTACCAAAACTCTCTTCTNTGCGCATAATTGA
rJMFF022I06+          TTTTTAAGTTGAGCAATGGTATTAGTATGTACCAAAACTCTCTTCTCTGCGCATAATTGA
JMFF042N15-           TTTTTAAGTTGAGCAATGGTATTAGTATGTACCAAAACTCTCTTCTCTGCGCATAATTGA
rJMFF042N15+          TTTTTAAGTTGAGCAATGGTATTAGTATGTACCAAAACTCTCTTCTCTGCGCATAATTGA
rJMFF043I12+          TTTTTAAGTTGAGCAATGGTATTAGTATGTACCAAAACTCTCTTCTCTGCGCATAATTGA
                      ____________________________________________________________
consensus             TTTTTAAGTTGAGCAATGGTATTAGTATGTACCAAAACTCTCTTCTCTGCGCATAATTGA
 
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rJMFF020N22+          TGCTNTCATCCTTNGTAGNGTCAACAAATCTAAACTATTNGAATGGTGGCATAGTCGTTC
rJMFF022I06+          TGCTCTCATCCTTTGTAGTGTCAACAAATCTAAACTATTTGAATGGTGGCATTGTCGTTC
JMFF042N15-           TGCTCTCATCCTTTGTAGTGTCAACAAATCTAAACTATTTGAATGGTGGCATTGTCGTTC
rJMFF042N15+          TGCTCTCATCCTTTGTAGTGTCAACAAATCTAAACTATTTGAATGGTGGCATTGTCGTTC
rJMFF043I12+          TGCTCTCATCCTTTGTAGTGTCAACAAATCTAAACTATTTGAATGGTGGCATTGTCGTTC
                      ____________________________________________________________
consensus             TGCTCTCATCCTTTGTAGTGTCAACAAATCTAAACTATTTGAATGGTGGCATTGTCGTTC
 
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rJMFF020N22+          TGGTNTCATCATATCTNGGATCATCAAATGTGTCAAGTTTCTGGCACCGTATCTTAAATT
rJMFF022I06+          TGGTTTCATCATATCTAGGATCATCAAATGTGTCAAGTTTTTGGCACCGTATCTTAAATT
JMFF042N15-           TGGTTTCATCATATCTAGGATCATCAAATGTGTCAAGTTTTTGGCACCGTATCTTAAATT
rJMFF042N15+          TGGTTTCATCATATCTAGGATCATCAAATGTGTCAAGTTTTTGGCACCGTATCTTAAATT
rJMFF043I12+          TGGTTTCATCATATCTAGGATCATCAAATGTGTCAAGTTTTTGGCACCGTATCTTAAATT
                      ____________________________________________________________
consensus             TGGTTTCATCATATCTAGGATCATCAAATGTGTCAAGTTTTTGGCACCGTATCTTAAATT
 
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rJMFF020N22+          ATGTGACGTGATTNGTGTAACG                                      
rJMFF022I06+          ATGTGATGTGATTTGTGTAACGTGTCATGTCTCNGAATTAG                   
JMFF042N15-           ATGTGATGTGATTTGTGTAACGTGTCATGTCTCTGAATTAGTTGATTTCATGGTTTAATT
rJMFF042N15+          ATGTGATGTGATTTGTGTAACGTGTCATGTCTCTGAATTAGTTGATTTCATGGTTTAATT
rJMFF043I12+          ATGTGATGTGATTTGTGTAACGTGTCATGTCTCTGAATTAGTTGATTTCATGGTTTAATT
                      ____________________________________________________________
consensus             ATGTGATGTGATTTGTGTAACGTGTCATGTCTCTGAATTAGTTGATTTCATGGTTTAATT
 
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JMFF042N15-           TTTAATTTCTTTTAGACC                                          
rJMFF042N15+          TTTAATTTCTTTTAGACC                                          
rJMFF043I12+          TTTAATTTCTTTTAGACCAAAAAAAAAAAAAAAGACTCACCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TTTAATTTCTTTTAGACCAAAAAAAAAAAAAAAGACTCACCAGGGTGATCCGCCATAAGG