| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026N23 | Sequence | 635 | 007393 (3) | emb|CDP08260.1| | 5e-34 | unnamed protein product [Coffea canephora] | 756 | 012417 (3) | ref|XP_011081683.1| | 1e-90 | PREDICTED: zinc transporter 4, chloroplastic-like [Sesamum indicum] |
| JMFF043D04 | Sequence | 666 | 007393 (3) | emb|CDP08260.1| | 5e-42 | unnamed protein product [Coffea canephora] | 605 | 012417 (3) | ref|XP_011081683.1| | 3e-91 | PREDICTED: zinc transporter 4, chloroplastic-like [Sesamum indicum] |
| JMSF009E15 | Sequence | 272 | 007393 (3) | 751 | 012417 (3) | ref|XP_011081683.1| | 2e-108 | PREDICTED: zinc transporter 4, chloroplastic-like [Sesamum indicum] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF009E15+ GTCTGACACTG
____________________________________________________________
consensus GTCTGACACTG
. : . : . : . : . : . :
rJMSF009E15+ TAATTGTTCCAGTGGAGACAAAAGGGAGGAATGGGAAGTTGTTTGGGGAAGAAGAAGGAG
rJMFF026N23+ GTGGAGACAAAAGGGAGGAATGGGAAGTTGTTTGGGGAAGAAGAAGGAG
____________________________________________________________
consensus TAATTGTTCCAGTGGAGACAAAAGGGAGGAATGGGAAGTTGTTTGGGGAAGAAGAAGGAG
. : . : . : . : . : . :
rJMSF009E15+ GCGCAATTCACATTGTTGGGATGCATGCACATGCAGCTCATCATAGACATAGCCACTCTC
rJMFF026N23+ GCGCAATTCACATTGTTGGGATGCATGCACATGCAGCTCATCATAGACATAGCCACTCTC
____________________________________________________________
consensus GCGCAATTCACATTGTTGGGATGCATGCACATGCAGCTCATCATAGACATAGCCACTCTC
. : . : . : . : . : . :
rJMSF009E15+ AAGAAGCAGGTGCATGTGAAGGCCATACAAAGGAGCATTCACATGGTCATTCACATTCCC
rJMFF026N23+ AAGAAGCAGGTGCATGTGAAGGCCATACAAAGGAGCATTCACATGGTCATTCACATTCCC
____________________________________________________________
consensus AAGAAGCAGGTGCATGTGAAGGCCATACAAAGGAGCATTCACATGGTCATTCACATTCCC
. : . : . : . : . : . :
rJMSF009E15+ AC-TCACACAGTTTTGGTCATGGGGATGAGGAAAATGGTGTGAGGCATGTAGTTGTTTCG
rJMFF026N23+ ACTTCACACAGTTTTGGTCATGGGGATGAGGAAAATGGTGTGAGGCATGTAGTTGTTTCG
rJMFF043D04+ TCACACAGTTTTGGTCATGGGGATGAGGAAAATGGTGTGAGGCATGTAGTTGTTTCG
____________________________________________________________
consensus ACTTCACACAGTTTTGGTCATGGGGATGAGGAAAATGGTGTGAGGCATGTAGTTGTTTCG
. : . : . : . : . : . :
rJMSF009E15+ CAGGTTTTGGAACTTGGTATAGTATCTCACTCGATGATTATTGGTCTATCGCTTGGGGTT
rJMFF026N23+ CAGGTTTTGGAACTTGGTATAGTATCTCACTCGATGATTATTGGTCTATCGCTTGGGGTT
rJMFF043D04+ TAGGTTTTGGAACTTGGTATAGTATCTCACTCGATGATTATTGGTCTATCGCTTGGGGTT
____________________________________________________________
consensus CAGGTTTTGGAACTTGGTATAGTATCTCACTCGATGATTATTGGTCTATCGCTTGGGGTT
. : . : . : . : . : . :
rJMSF009E15+ TCAGAAAGTCCATGCACAATTAGACCCTTGATTGCAGCACTAGCATTCCATCAGTTCTTT
rJMFF026N23+ TCAGAAAGTCCATGCACAATTAGACCCTTGATTGCAGCACTAGCATTCCATCAGTTCTTT
rJMFF043D04+ TCAGAAAGTCCATGCACAATTAGACCCTTGATTGCAGCACTAGCATTCCATCAGTTCTTT
____________________________________________________________
consensus TCAGAAAGTCCATGCACAATTAGACCCTTGATTGCAGCACTAGCATTCCATCAGTTCTTT
. : . : . : . : . : . :
rJMSF009E15+ GAAGGGTTTGCTTTAGGAGGATGCATTTCGCAGGCCCAGTTTAGGACTCTACGCTCCACT
rJMFF026N23+ GAAGGGTTTGCTTTAGGAGGATGCATTTCGCAGGCCCAGTTTAGGACTCTACGCTCCACT
rJMFF043D04+ GAAGGGTTTGCTTTAGGAGGATGCATTTCGCAGGCCCAGTTTAGGACTCTACGCTCCACT
____________________________________________________________
consensus GAAGGGTTTGCTTTAGGAGGATGCATTTCGCAGGCCCAGTTTAGGACTCTACGCTCCACT
. : . : . : . : . : . :
rJMSF009E15+ CTAATGGCCACGTTTTTTGCTGTAACAACCCCCTTAGGGATTGCTGCGGGCCTGTGTGTT
rJMFF026N23+ CTAATGGCCACGTTTTTTGCTGTAACAACCCCCTTAGGGATTGCTGCGGGCCTGTGTGTT
rJMFF043D04+ CTAATGGCCACGTTTTTTGCTGTAACAACCCCCTTAGGGATTGCTGCGGGCCTGTGTGTT
____________________________________________________________
consensus CTAATGGCCACGTTTTTTGCTGTAACAACCCCCTTAGGGATTGCTGCGGGCCTGTGTGTT
. : . : . : . : . : . :
rJMSF009E15+ TCCTCATTCTATAATCCGAGTAGCCCTAGAGCGATGGTAGTGGAGGGCATCTTCGACTCT
rJMFF026N23+ TCCTCATTCTATAATCCGAGTAGCCCTAGAGCGATGGTAGTGGAGGGCATCTTCGACTCT
rJMFF043D04+ TCCTCATTCTATAATCCGAGTAGCCCTAGAGCGATGGTAGTGGAGGGCATCTTCGACTCT
____________________________________________________________
consensus TCCTCATTCTATAATCCGAGTAGCCCTAGAGCGATGGTAGTGGAGGGCATCTTCGACTCT
. : . : . : . : . : . :
rJMSF009E15+ ATCTCTGCCGGAATCCTAGTCTACATGGCTTTGGTGGACTTAATTGCCGCCGATTTCTTG
rJMFF026N23+ ATCTCTGCCGGAATCCTAGTCTACATGGCTTTGGTGGACTTAATTGCCGCCGATTTCTTG
rJMFF043D04+ ATCTCTGCCGGAATCCTAGTCTACATGGCTTTGGTGGACTTAATTGCCGCCGATTTCTTG
____________________________________________________________
consensus ATCTCTGCCGGAATCCTAGTCTACATGGCTTTGGTGGACTTAATTGCCGCCGATTTCTTG
. : . : . : . : . : . :
rJMSF009E15+ AGCAAAAAGATGAGCTGCAATACCAGGCTTCAGATAGCTTCATATTTTTGCCTGTTTTTA
rJMFF026N23+ AGCAAAAAGATGAGCTGCAATACCAGGCTTCAGATAGCTTCATATTTTTGCCTGTTTTTA
rJMFF043D04+ AGCAAAAAGATGAGCTGCAATACCAGGCTTCAGATAGCTTCATATTTTTGCCTGTTTTTA
____________________________________________________________
consensus AGCAAAAAGATGAGCTGCAATACCAGGCTTCAGATAGCTTCATATTTTTGCCTGTTTTTA
. : . : . : . : . : . :
rJMSF009E15+ GGGTCTCTACTGATGTCATCTCTGGCAATATGGGCTTGAATTCACATAATTTGTTGCATG
rJMFF026N23+ GGGTCTCTACTGATGTCATCTCTGGCAATATGGGCTTGAATTCACATAATTTGTTGCATG
rJMFF043D04+ GGGTCTCTACTGATGTCATCTCTGGCAATATGGGCTTGAATTCACATAATTTGTTGCATG
____________________________________________________________
consensus GGGTCTCTACTGATGTCATCTCTGGCAATATGGGCTTGAATTCACATAATTTGTTGCATG
. : . : . : . : . : . :
rJMSF009E15+ CATATGCTGTTTAGCTTTTGT
rJMFF026N23+ CATATGCTGTTTAGCTTTTGTTGTTTTCTTAGGAAATCCAA
rJMFF043D04+ CATATGCTGTTTAGCTTTTGTTGTTTTCTTAGGAAATCCAATAAAAGCATTGTTTGTGTT
____________________________________________________________
consensus CATATGCTGTTTAGCTTTTGTTGTTTTCTTAGGAAATCCAATAAAAGCATTGTTTGTGTT