Contig 012411:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016J03Sequence442007346 (3)ref|XP_009626744.1|109PREDICTED: uncharacterized protein LOC104117398 [Nicotiana tomentosiformis] ref|767012411 (3)ref|XP_004231042.1|161PREDICTED: uncharacterized protein LOC101266077 [Solanum lycopersicum]
JMFF037A19Sequence505007346 (3)ref|XP_009797256.1|172PREDICTED: uncharacterized protein LOC104243716 [Nicotiana sylvestris] ref|XP_00639012411 (3)ref|XP_004231042.1|90.5PREDICTED: uncharacterized protein LOC101266077 [Solanum lycopersicum]
JMFF042K22Sequence617007346 (3)ref|XP_009797256.1|245PREDICTED: uncharacterized protein LOC104243716 [Nicotiana sylvestris] ref|XP_00503012411 (3)

Alignment

This contig is upended


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rJMFF016J03+                                                              AATCAGCA
                      ____________________________________________________________
consensus                                                                 AATCAGCA
 
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rJMFF016J03+          ACTTTTGGAAGAGGCTACAAGGGCAGGCAGTGCTCGAAGCTGAGGTTGCAAGGCTCAAGT
                      ____________________________________________________________
consensus             ACTTTTGGAAGAGGCTACAAGGGCAGGCAGTGCTCGAAGCTGAGGTTGCAAGGCTCAAGT
 
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rJMFF037A19+                                                               TATGAGA
rJMFF016J03+          GTTTGCTTGTGGATATAAGAGGAAGAATTGAAGGTGAAATTGGATCCTTTCCGTATGAGA
                      ____________________________________________________________
consensus             GTTTGCTTGTGGATATAAGAGGAAGAATTGAAGGTGAAATTGGATCCTTTCCGTATGAGA
 
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rJMFF037A19+          AGCAGCAAGTCAAAAACAGAGATGCATATCAGGATCTTGTTAATCCTACTGCCCTTCNTG
rJMFF016J03+          AGCAGCAAGTCAAAAACAGAGATGCATATCAGGATCTTGTTAATCCTACTGCCCTTCCTG
                      ____________________________________________________________
consensus             AGCAGCAAGTCAAAAACAGAGATGCATATCAGGATCTTGTTAATCCTACTGCCCTTCCTG
 
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rJMFF037A19+          GAGGAGGAGGAGGAGCATATGTTATGAACCCTTGCAATATGCAATGCAATGATCCCCTTT
rJMFF016J03+          GAGGAGGAGGAGGAGCATATGTTATGAACCCTTGCAATATGCAATGCAATGATCCCCTTT
                      ____________________________________________________________
consensus             GAGGAGGAGGAGGAGCATATGTTATGAACCCTTGCAATATGCAATGCAATGATCCCCTTT
 
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rJMFF037A19+          ATTGCCTCCAACCTGGTTCAGAAGGTGGTGGTGTGAGTTCAGAGGGAACTACATTGAACA
rJMFF016J03+          ATTGCCTCCAACCTGGTTCAGAAGGTGGTGGTGTGAGTTCAGAGGGAACTACATTGAACA
                      ____________________________________________________________
consensus             ATTGCCTCCAACCTGGTTCAGAAGGTGGTGGTGTGAGTTCAGAGGGAACTACATTGAACA
 
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rJMFF037A19+          ACCAAGGATTATTCAATAATTGTGATTTTGAGAGTCTACAATGTTTGGGCAATCAGACTT
rJMFF016J03+          ACCAAGGATTATTCAATAATTGTGATTTTGAGAGTCTACAATGTTTGGGCAATCAGACTT
rJMFF042K22+                                               ACAATGTTTGGGCAATCAGACTT
                      ____________________________________________________________
consensus             ACCAAGGATTATTCAATAATTGTGATTTTGAGAGTCTACAATGTTTGGGCAATCAGACTT
 
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rJMFF037A19+          CTTCTGGATTCAAAGAGCTTCCTGGTTGTGGTGTAGGCAACAGTAAGCCTGCCAATGTTT
rJMFF016J03+          CTTCTGGATTCAAAGAGCTTCCTGGTTGTGGTGTAGGCAACAGTAAGCCTGCCAATGTTT
rJMFF042K22+          CTTTTGGATTCAAAGAGCTTCCTGGTTGTGGTGTAGGCAACAGTAAGCCTGCCAATGTTT
                      ____________________________________________________________
consensus             CTTCTGGATTCAAAGAGCTTCCTGGTTGTGGTGTAGGCAACAGTAAGCCTGCCAATGTTT
 
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rJMFF037A19+          CTGGTGGGAGTAAGAAAAAAAGAGCAGCACGCTCAGCTACAGCTAGTTGAACTCTTCAGG
rJMFF016J03+          CTGGTGGGAGTAAGAAAAAAAGAGCAGCACGCTCAGCTACAGCTAGTTGAACTCTTCAGG
rJMFF042K22+          CTGGTGGGAGTAAGAAAAAAAGAGCAGCACGCTCAGCTACAGCTAGTTGAACTCTTCAGG
                      ____________________________________________________________
consensus             CTGGTGGGAGTAAGAAAAAAAGAGCAGCACGCTCAGCTACAGCTAGTTGAACTCTTCAGG
 
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rJMFF037A19+          TGGAGGCATCATCTTCAGTGTAGACAACAAGTATGATGTCTGTTATCATACCTCCCCCTC
rJMFF016J03+          TGGAGGCATCATCTTCAGTGTAGACAACAAGTATGATGTCTGTTATCATACCTCCCCCTC
rJMFF042K22+          TGGAGGCATCATCTTCAGTGTAGACAACAAGTATGATGTCTGTTATCATACCTCCCCCTC
                      ____________________________________________________________
consensus             TGGAGGCATCATCTTCAGTGTAGACAACAAGTATGATGTCTGTTATCATACCTCCCCCTC
 
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rJMFF037A19+          CCTCCCAGAACTTGATTTTGTTGGGATTTAGGGATAGCAGCTCAGGCTCTTTATTTTATT
rJMFF016J03+          CCTCCCAGAACTTGATTTTGTTGGGATTTAGGGATAGCAGCTCAGG-GCTTTATTTTATT
rJMFF042K22+          CCTCCCAGAACTTGATTTTGTTGGGATTTAGGGATAGCAGCTCAGGCTCTTTATTTTATT
                      ____________________________________________________________
consensus             CCTCCCAGAACTTGATTTTGTTGGGATTTAGGGATAGCAGCTCAGGCTCTTTATTTTATT
 
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rJMFF037A19+          ATTATTATTATTAGCTCAATAACACCTTAGTGGATGAGATGCAGTCCATGGATATTAAGT
rJMFF016J03+          ATTATTATTATTAGCTCAATAACACCTTAGTGGATGAGATGCAGTCCATGGATATTAAGT
rJMFF042K22+          ATTATTATTATTAGCTCAATAACACCTTAGTGGATGAGATGCAGTCCATGGATATTAAGT
                      ____________________________________________________________
consensus             ATTATTATTATTAGCTCAATAACACCTTAGTGGATGAGATGCAGTCCATGGATATTAAGT
 
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rJMFF037A19+          CTTACTTAACAACAATCTTATGTAAAGCATAAAACTTGTGTCATGCAGCTGACACAGCTT
rJMFF016J03+          CTTACTTAACAACAATCTTATGTAAAGCATAAAACTTGTGTCATGCAGCTGACACAGCTT
rJMFF042K22+          CTTACTTAACAACAATCTTATGTAAAGCATAAAACTTGTGTCATGCAGCTGACACAGCTT
                      ____________________________________________________________
consensus             CTTACTTAACAACAATCTTATGTAAAGCATAAAACTTGTGTCATGCAGCTGACACAGCTT
 
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rJMFF037A19+          ATGAAGAGGAAACCAACATCTTGGTTGCCTAA                            
rJMFF016J03+          ATGAAGAGGAAACCAACATCTTGGTTGCCTAATGAAGCTC                    
rJMFF042K22+          ATGAAGAGGAAACCAACATCTTGGTTGCCTAATGAAGCTCTGGAGCTGTTTTGCTCTCAA
                      ____________________________________________________________
consensus             ATGAAGAGGAAACCAACATCTTGGTTGCCTAATGAAGCTCTGGAGCTGTTTTGCTCTCAA
 
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rJMFF042K22+          ATCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAAAAAAAAAAAAAACTCTCCAGGG
                      ____________________________________________________________
consensus             ATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAAAAAAAAAAAAACTCTCCAGGG