Contig 012409:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042I21Sequence656021702ref|XP_009792271.1|4e-107PREDICTED: protoporphyrinogen oxidase, mitochondrial [Nicotiana sylvestris] ref620012409 (2)ref|XP_008231151.1|2e-100PREDICTED: protoporphyrinogen oxidase, mitochondrial [Prunus mume]
JMSF005M18Sequence301012409 (2)ref|XP_008231151.1|1e-07PREDICTED: protoporphyrinogen oxidase, mitochondrial [Prunus mume]193020286

Alignment

This contig is upended


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rJMFF042I21-                                                  GGATACAAAAGTAATAGCAT
                      ____________________________________________________________
consensus                                                     GGATACAAAAGTAATAGCAT
 
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rJMFF042I21-          TTGAATATTTCAAGAAAAGAATACAAACACACTATAAAATAGGAACATGAAAGGCACCTT
                      ____________________________________________________________
consensus             TTGAATATTTCAAGAAAAGAATACAAACACACTATAAAATAGGAACATGAAAGGCACCTT
 
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rJMFF042I21-          ATCTACTGCATTCATTGGTGATTTGAAGGCTCAACTGATGAAGATTCCAAATATGAGATT
                      ____________________________________________________________
consensus             ATCTACTGCATTCATTGGTGATTTGAAGGCTCAACTGATGAAGATTCCAAATATGAGATT
 
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rJMFF042I21-          ACAAGATCAGCTGCACTGCAACCAGATGAAATTGCTTTGCCTACAGATAGTCCTCCTTTA
                      ____________________________________________________________
consensus             ACAAGATCAGCTGCACTGCAACCAGATGAAATTGCTTTGCCTACAGATAGTCCTCCTTTA
 
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JMSF005M18+                                         TTCTTCTCCATGTTTTCAACTGCTTCCAGG
rJMFF042I21-          TGGTTACCTGCATAGAAAAATCCAGGGAGGTTCTTCTCCATGTTTTCAACTGCTTCCAGG
                      ____________________________________________________________
consensus             TGGTTACCTGCATAGAAAAATCCAGGGAGGTTCTTCTCCATGTTTTCAACTGCTTCCAGG
 
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JMSF005M18+           ACTGAATCATAGTCAAGACCATATAAAGGAAATGCTTTACTCCAGTAGACATGG      
rJMFF042I21-          ACTGAATCATAGTTACGACCATATAAAGGAAATGCTTTACTCCAGTAGACATGGTTCACA
                      ____________________________________________________________
consensus             ACTGAATCATAGTTACGACCATATAAAGGAAATGCTTTACTCCAGTAGACATGGTTCACA
 
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rJMFF042I21-          AACTGTGGCTCTCCCTCTACACCCAGCAACTGCTTAAGGTCAGACGTCACAATTTGCTTC
                      ____________________________________________________________
consensus             AACTGTGGCTCTCCCTCTACACCCAGCAACTGCTTAAGGTCAGACGTCACAATTTGCTTC
 
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rJMFF042I21-          AGCTCATCCCTTGAAGCTTTTGCAAGTTCTCTATTTCGACTTCCACCGACAAAAGTAGTG
                      ____________________________________________________________
consensus             AGCTCATCCCTTGAAGCTTTTGCAAGTTCTCTATTTCGACTTCCACCGACAAAAGTAGTG
 
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rJMFF042I21-          TAAAGATAAACATTACTTGGTGCTCGATCTGGAAACATCGTTGAAGAGAAAAGAGTTCCT
                      ____________________________________________________________
consensus             TAAAGATAAACATTACTTGGTGCTCGATCTGGAAACATCGTTGAAGAGAAAAGAGTTCCT
 
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rJMFF042I21-          AGTGTCTTCAAACCATTTTGTTCCTCTTTAGATGGTACAAGAACTCCAAACCCCTCAAGT
                      ____________________________________________________________
consensus             AGTGTCTTCAAACCATTTTGTTCCTCTTTAGATGGTACAAGAACTCCAAACCCCTCAAGT
 
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rJMFF042I21-          GGCCGCTTTACATTTTCTTTTTTGAATGTTGTGATCATGACAGAGACAGGAACATAACTG
                      ____________________________________________________________
consensus             GGCCGCTTTACATTTTCTTTTTTGAATGTTGTGATCATGACAGAGACAGGAACATAACTG