Contig 012404:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041M17Sequence635012404 (12)ref|XP_004244291.1|1e-96PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum]556012404 (12)emb|CDP06049.1|7e-41unnamed protein product [Coffea canephora]
JMSF001E02Sequence394012404 (12)ref|XP_004244291.1|7e-39PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum]515012404 (12)ref|XP_004244291.1|2e-63PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum]
JMSF002G11Sequence241012404 (12)ref|XP_004244291.1|1e-05PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum]717012404 (12)emb|CDP06049.1|7e-110unnamed protein product [Coffea canephora]
JMSF017F12Sequence506013318 (15)ref|XP_006430167.1|1e-44hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P733012404 (12)emb|CDP06049.1|1e-109unnamed protein product [Coffea canephora]
JMSF048O05Sequence672012404 (12)ref|XP_004244291.1|4e-112PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum]734012404 (12)emb|CDP06049.1|1e-109unnamed protein product [Coffea canephora]
JMSF050G24Sequence306012404 (12)ref|XP_010675284.1|5e-43PREDICTED: 50S ribosomal protein L13, chloroplastic [Beta vulgaris subsp. vulga
JMSF050H24Sequence683012404 (12)ref|XP_004244291.1|9e-106PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum]720012404 (12)emb|CDP06049.1|1e-93unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF041M17- ATACAGTGGAGAC
JMSF002G11- ATACAGTGGAGAC
JMSF001E02- GGGTATATACAGTGGAGAC
JMSF050H24- GGGCTGGGTGGGTATATACAGTGGAGAC
                      ____________________________________________________________
consensus GGGCTGGGTGGGTATATACAGTGGAGAC
 
. : . : . : . : . : . :
JMFF041M17- ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
JMSF002G11- ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
JMSF001E02- ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
JMSF050H24- ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
JMSF048O05- TAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
                      ____________________________________________________________
consensus ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
 
. : . : . : . : . : . :
JMFF041M17- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
JMSF002G11- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
JMSF001E02- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
JMSF050H24- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
JMSF048O05- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
                      ____________________________________________________________
consensus AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
 
. : . : . : . : . : . :
JMFF041M17- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
JMSF002G11- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
JMSF001E02- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
JMSF050H24- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
rJMSF001E02+ CCAAGCTAA
JMSF048O05- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
rJMSF002G11+ CCACATCCGTTGCCAAGCTAA
rJMSF048O05+ TGGACCACCCACATCCGTTGCCAAGCTAA
rJMSF017F12+ TGGACCACCCACATCCGTTGCCAAGCTAA
                      ____________________________________________________________
consensus CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
 
. : . : . : . : . : . :
JMFF041M17- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
JMSF002G11- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATG
JMSF001E02- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
JMSF050H24- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
rJMSF001E02+ GGCTGCCNCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCNATTTCAAAGGCCC
JMSF048O05- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
rJMSF002G11+ GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
rJMSF048O05+ GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
rJMSF017F12+ GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
                      ____________________________________________________________
consensus GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
 
. : . : . : . : . : . :
JMFF041M17- GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
JMSF001E02- GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
JMSF050H24- GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF001E02+ GGATATTTNGAATNCAACATGGTATCCAAAAGCTGTTGATCATGTGAACNCAGAAAAGCC
JMSF048O05- GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF002G11+ GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF048O05+ GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF017F12+ GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF050H24+ GGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
                      ____________________________________________________________
consensus GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
 
. : . : . : . : . : . :
JMFF041M17- ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
JMSF001E02- ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
JMSF050H24- ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF001E02+ ATGGTATNTTGTTGATGCCCCTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
JMSF048O05- ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF002G11+ ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF048O05+ ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF017F12+ ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF050H24+ ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
                      ____________________________________________________________
consensus ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
 
. : . : . : . : . : . :
JMFF041M17- TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
JMSF001E02- TCATATTCGA
JMSF050H24- TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF001E02+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTNGTGTGGATATGGGTGCTTTTGN
JMSF048O05- TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF002G11+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF048O05+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF017F12+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF050H24+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
                      ____________________________________________________________
consensus TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
 
. : . : . : . : . : . :
JMFF041M17- TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
JMSF050H24- TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF001E02+ TATTGTGATCAANGCTGAGAAAGTNNCTGTATNTGGAAAAAAGAGGGTACNAAAGATNTN
JMSF048O05- TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF002G11+ TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF048O05+ TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF017F12+ TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF050G24+ ATTGTGATCATTGGTGAGAAAGTAGCTGTATCTGGAAAAAANAGGGTACAAAAGATGTN
rJMSF050H24+ TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMFF041M17+ GGGTACAAAAGATCTA
                      ____________________________________________________________
consensus TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
 
. : . : . : . : . : . :
JMFF041M17- CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
JMSF050H24- CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF001E02+ CNGAAGNCNCTCGGGAAGACCCGGTGGGATGAAAGAGGNGAACTTTNANCAGCTTCNGAA
JMSF048O05- CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF002G11+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF048O05+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF017F12+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF050G24+ CAGAAGACACTCGGGAAGACCCGGTGGGATGANAGAGGAGAACTTTGANCAGCTTCAGAA
rJMSF050H24+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMFF041M17+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
                      ____________________________________________________________
consensus CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
 
. : . : . : . : . : . :
JMFF041M17- AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
JMSF050H24- AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF001E02+ AAGGATTCCTGAGAGGATCNTTGAGCNTGCTGTCCGAGGGATGCTTCCCAAGGGAAGG
JMSF048O05- AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF002G11+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF048O05+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF017F12+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF050G24+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGACGCTTCCCAAGGGAAGGCT
rJMSF050H24+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMFF041M17+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
                      ____________________________________________________________
consensus AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
 
. : . : . : . : . : . :
JMFF041M17- TGGCAGACATTTATTTAAC
JMSF050H24- TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCAC
JMSF048O05- TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMSF002G11+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMSF048O05+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMSF017F12+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMSF050G24+ TGGCAGACATTTATTTAACCATNCTAAGGTGTATAAAGGCCCCGAACATCCTCNCCAGGC
rJMSF050H24+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMFF041M17+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
                      ____________________________________________________________
consensus TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
 
. : . : . : . : . : . :
JMSF048O05- ACAGAAACCCAGTGATTTGCCCATAAGGG
rJMSF002G11+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
rJMSF048O05+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
rJMSF017F12+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
rJMSF050G24+ ACAGAAACCCAGTGATTNGCCCNTAAGGGACAAGAGGNTCGAGAAA
rJMSF050H24+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
rJMFF041M17+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
                      ____________________________________________________________
consensus ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
 
. : . : . : . : . : . :
rJMSF002G11+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
rJMSF048O05+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
rJMSF017F12+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
rJMSF050H24+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
rJMFF041M17+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
                      ____________________________________________________________
consensus AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
 
. : . : . : . : . : . :
rJMSF002G11+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
rJMSF048O05+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
rJMSF017F12+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
rJMSF050H24+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
rJMFF041M17+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
                      ____________________________________________________________
consensus TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
 
. : . : . : . : . : . :
rJMSF002G11+ GTACAACATTCTACATTTGTAAACCTCCACTCCACC
rJMSF048O05+ GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTC
rJMSF017F12+ GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTC
rJMSF050H24+ GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTCTTTTCTTGAAATTATAT
rJMFF041M17+ GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTCTTTTCTTGAAATTATAT
                      ____________________________________________________________
consensus GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTCTTTTCTTGAAATTATAT
 
. : . : . : . : . : . :
rJMSF050H24+ GAATGTTGTGGGCTTGTTCAGTAGAGTACCCTTTTCAGTTCTAACAGGAAGCGGGCATTC
rJMFF041M17+ GAATGTTGTGGGCTTGTTCAGTAGAGTACCCTTTTCAGTTCTAACAGGAAGCGGGCATTC
                      ____________________________________________________________
consensus GAATGTTGTGGGCTTGTTCAGTAGAGTACCCTTTTCAGTTCTAACAGGAAGCGGGCATTC
 
. : . : . : . : . : . :
rJMSF050H24+ TTGTATT
rJMFF041M17+ TTGTATTTGACTTCATGAAAGTGAGGTTTAATGTAAAAGACTGCTCTTTACTGTCCTTCC
                      ____________________________________________________________
consensus TTGTATTTGACTTCATGAAAGTGAGGTTTAATGTAAAAGACTGCTCTTTACTGTCCTTCC