| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041M17 | Sequence | 635 | 012404 (12) | ref|XP_004244291.1| | 1e-96 | PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum] | 556 | 012404 (12) | emb|CDP06049.1| | 7e-41 | unnamed protein product [Coffea canephora] |
| JMSF001E02 | Sequence | 394 | 012404 (12) | ref|XP_004244291.1| | 7e-39 | PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum] | 515 | 012404 (12) | ref|XP_004244291.1| | 2e-63 | PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum] |
| JMSF002G11 | Sequence | 241 | 012404 (12) | ref|XP_004244291.1| | 1e-05 | PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum] | 717 | 012404 (12) | emb|CDP06049.1| | 7e-110 | unnamed protein product [Coffea canephora] |
| JMSF017F12 | Sequence | 506 | 013318 (15) | ref|XP_006430167.1| | 1e-44 | hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P | 733 | 012404 (12) | emb|CDP06049.1| | 1e-109 | unnamed protein product [Coffea canephora] |
| JMSF048O05 | Sequence | 672 | 012404 (12) | ref|XP_004244291.1| | 4e-112 | PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum] | 734 | 012404 (12) | emb|CDP06049.1| | 1e-109 | unnamed protein product [Coffea canephora] |
| JMSF050G24 | Sequence | 306 | 012404 (12) | ref|XP_010675284.1| | 5e-43 | PREDICTED: 50S ribosomal protein L13, chloroplastic [Beta vulgaris subsp. vulga | |||||
| JMSF050H24 | Sequence | 683 | 012404 (12) | ref|XP_004244291.1| | 9e-106 | PREDICTED: 50S ribosomal protein L13, chloroplastic [Solanum lycopersicum] | 720 | 012404 (12) | emb|CDP06049.1| | 1e-93 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFF041M17- ATACAGTGGAGAC
JMSF002G11- ATACAGTGGAGAC
JMSF001E02- GGGTATATACAGTGGAGAC
JMSF050H24- GGGCTGGGTGGGTATATACAGTGGAGAC
____________________________________________________________
consensus GGGCTGGGTGGGTATATACAGTGGAGAC
. : . : . : . : . : . :
JMFF041M17- ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
JMSF002G11- ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
JMSF001E02- ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
JMSF050H24- ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
JMSF048O05- TAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
____________________________________________________________
consensus ATAAGAGACAGAGAGGAAGATAGCAATGGCTGCTTTACAGTGTTTCACCGCCTCCTCGGC
. : . : . : . : . : . :
JMFF041M17- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
JMSF002G11- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
JMSF001E02- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
JMSF050H24- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
JMSF048O05- AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
____________________________________________________________
consensus AAAACCATTCTCGTCTACTCCCAAAAAACCTCCATTTCTAGGGTTCTCCCTCCCCTCATC
. : . : . : . : . : . :
JMFF041M17- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
JMSF002G11- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
JMSF001E02- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
JMSF050H24- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
rJMSF001E02+ CCAAGCTAA
JMSF048O05- CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
rJMSF002G11+ CCACATCCGTTGCCAAGCTAA
rJMSF048O05+ TGGACCACCCACATCCGTTGCCAAGCTAA
rJMSF017F12+ TGGACCACCCACATCCGTTGCCAAGCTAA
____________________________________________________________
consensus CAAGCCCTCCGTTCAGCTCCTTCGGACCCATTGGACCACCCACATCCGTTGCCAAGCTAA
. : . : . : . : . : . :
JMFF041M17- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
JMSF002G11- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATG
JMSF001E02- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
JMSF050H24- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
rJMSF001E02+ GGCTGCCNCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCNATTTCAAAGGCCC
JMSF048O05- GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
rJMSF002G11+ GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
rJMSF048O05+ GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
rJMSF017F12+ GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
____________________________________________________________
consensus GGCTGCCGCTATCCCCGCCGAGCAGCAATGGATGTTCGATGAGACCGATTTCAAAGGCCC
. : . : . : . : . : . :
JMFF041M17- GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
JMSF001E02- GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
JMSF050H24- GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF001E02+ GGATATTTNGAATNCAACATGGTATCCAAAAGCTGTTGATCATGTGAACNCAGAAAAGCC
JMSF048O05- GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF002G11+ GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF048O05+ GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF017F12+ GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
rJMSF050H24+ GGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
____________________________________________________________
consensus GGATATTTGGAATACAACATGGTATCCAAAAGCTGTTGATCATGTGAACACAGAAAAGCC
. : . : . : . : . : . :
JMFF041M17- ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
JMSF001E02- ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
JMSF050H24- ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF001E02+ ATGGTATNTTGTTGATGCCCCTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
JMSF048O05- ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF002G11+ ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF048O05+ ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF017F12+ ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
rJMSF050H24+ ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
____________________________________________________________
consensus ATGGTATATTGTTGATGCCACTGATAAGAAACTTGGAAGATTGGCATCAACTATAGCTAT
. : . : . : . : . : . :
JMFF041M17- TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
JMSF001E02- TCATATTCGA
JMSF050H24- TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF001E02+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTNGTGTGGATATGGGTGCTTTTGN
JMSF048O05- TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF002G11+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF048O05+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF017F12+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
rJMSF050H24+ TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
____________________________________________________________
consensus TCATATTCGAGGAAAGAACCTGGTGACATATACTCCTAGTGTGGATATGGGTGCTTTTGT
. : . : . : . : . : . :
JMFF041M17- TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
JMSF050H24- TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF001E02+ TATTGTGATCAANGCTGAGAAAGTNNCTGTATNTGGAAAAAAGAGGGTACNAAAGATNTN
JMSF048O05- TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF002G11+ TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF048O05+ TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF017F12+ TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMSF050G24+ ATTGTGATCATTGGTGAGAAAGTAGCTGTATCTGGAAAAAANAGGGTACAAAAGATGTN
rJMSF050H24+ TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
rJMFF041M17+ GGGTACAAAAGATCTA
____________________________________________________________
consensus TATTGTGATCAATGCTGAGAAAGTAGCTGTATCTGGAAAAAAGAGGGTACAAAAGATCTA
. : . : . : . : . : . :
JMFF041M17- CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
JMSF050H24- CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF001E02+ CNGAAGNCNCTCGGGAAGACCCGGTGGGATGAAAGAGGNGAACTTTNANCAGCTTCNGAA
JMSF048O05- CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF002G11+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF048O05+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF017F12+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMSF050G24+ CAGAAGACACTCGGGAAGACCCGGTGGGATGANAGAGGAGAACTTTGANCAGCTTCAGAA
rJMSF050H24+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
rJMFF041M17+ CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
____________________________________________________________
consensus CAGAAGACACTCGGGAAGACCCGGTGGGATGAAAGAGGAGAACTTTGAACAGCTTCAGAA
. : . : . : . : . : . :
JMFF041M17- AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
JMSF050H24- AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF001E02+ AAGGATTCCTGAGAGGATCNTTGAGCNTGCTGTCCGAGGGATGCTTCCCAAGGGAAGG
JMSF048O05- AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF002G11+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF048O05+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF017F12+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMSF050G24+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGACGCTTCCCAAGGGAAGGCT
rJMSF050H24+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
rJMFF041M17+ AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
____________________________________________________________
consensus AAGGATTCCTGAGAGGATCATTGAGCATGCTGTCCGAGGGATGCTTCCCAAGGGAAGGCT
. : . : . : . : . : . :
JMFF041M17- TGGCAGACATTTATTTAAC
JMSF050H24- TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCAC
JMSF048O05- TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMSF002G11+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMSF048O05+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMSF017F12+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMSF050G24+ TGGCAGACATTTATTTAACCATNCTAAGGTGTATAAAGGCCCCGAACATCCTCNCCAGGC
rJMSF050H24+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
rJMFF041M17+ TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
____________________________________________________________
consensus TGGCAGACATTTATTTAACCATCTTAAGGTGTATAAAGGCCCAGAACATCCTCACCAGGC
. : . : . : . : . : . :
JMSF048O05- ACAGAAACCCAGTGATTTGCCCATAAGGG
rJMSF002G11+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
rJMSF048O05+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
rJMSF017F12+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
rJMSF050G24+ ACAGAAACCCAGTGATTNGCCCNTAAGGGACAAGAGGNTCGAGAAA
rJMSF050H24+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
rJMFF041M17+ ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
____________________________________________________________
consensus ACAGAAACCCAGTGATTTGCCCATAAGGGACAAGAGGATCGAGAAAATTTAATGTTATCA
. : . : . : . : . : . :
rJMSF002G11+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
rJMSF048O05+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
rJMSF017F12+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
rJMSF050H24+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
rJMFF041M17+ AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
____________________________________________________________
consensus AAACACTGCTCAGATGTCATTGAAGAGGTCTTGCTTCTCCAGCTGTTCATATTGTAGTTG
. : . : . : . : . : . :
rJMSF002G11+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
rJMSF048O05+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
rJMSF017F12+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
rJMSF050H24+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
rJMFF041M17+ TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
____________________________________________________________
consensus TTCGACTCCTCTCCTCTCGTACTTTTGATTTTGGGCCCTTTCTGCCAGCTTTTGTTTACT
. : . : . : . : . : . :
rJMSF002G11+ GTACAACATTCTACATTTGTAAACCTCCACTCCACC
rJMSF048O05+ GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTC
rJMSF017F12+ GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTC
rJMSF050H24+ GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTCTTTTCTTGAAATTATAT
rJMFF041M17+ GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTCTTTTCTTGAAATTATAT
____________________________________________________________
consensus GTACAACATTCTACATTTGTAAACCTCCACTCCACCCAAGCTCTTTTCTTGAAATTATAT
. : . : . : . : . : . :
rJMSF050H24+ GAATGTTGTGGGCTTGTTCAGTAGAGTACCCTTTTCAGTTCTAACAGGAAGCGGGCATTC
rJMFF041M17+ GAATGTTGTGGGCTTGTTCAGTAGAGTACCCTTTTCAGTTCTAACAGGAAGCGGGCATTC
____________________________________________________________
consensus GAATGTTGTGGGCTTGTTCAGTAGAGTACCCTTTTCAGTTCTAACAGGAAGCGGGCATTC
. : . : . : . : . : . :
rJMSF050H24+ TTGTATT
rJMFF041M17+ TTGTATTTGACTTCATGAAAGTGAGGTTTAATGTAAAAGACTGCTCTTTACTGTCCTTCC
____________________________________________________________
consensus TTGTATTTGACTTCATGAAAGTGAGGTTTAATGTAAAAGACTGCTCTTTACTGTCCTTCC