| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026C24 | Sequence | 520 | 011639 (7) | emb|CDP17136.1| | 9e-54 | unnamed protein product [Coffea canephora] | 707 | 012401 (6) | ref|XP_009591644.1| | 2e-83 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] |
| JMFF041J14 | Sequence | 646 | 011639 (7) | emb|CDP17136.1| | 7e-52 | unnamed protein product [Coffea canephora] | 597 | 012401 (6) | ref|XP_009591644.1| | 6e-42 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] |
| JMFF042C04 | Sequence | 649 | 011639 (7) | emb|CDP17136.1| | 2e-54 | unnamed protein product [Coffea canephora] | 589 | 012401 (6) | ref|XP_009591644.1| | 7e-52 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] |
| JMFF048B23 | Sequence | 411 | 011639 (7) | emb|CDP17136.1| | 2e-38 | unnamed protein product [Coffea canephora] | 335 | 012401 (6) | |||
| JMFF050J17 | Sequence | 630 | 011639 (7) | emb|CDP17136.1| | 5e-55 | unnamed protein product [Coffea canephora] | 554 | 012401 (6) | ref|XP_009591644.1| | 5e-43 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] |
| JMFS118D03 | Sequence | 505 | 012401 (6) | ref|XP_009591644.1| | 5e-22 | PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF026C24+ GAAG
____________________________________________________________
consensus GAAG
. : . : . : . : . : . :
rJMFF026C24+ AAAAATCGCCAGATCTTGTTCTCATCTGGCGACTGGTCCGTGGAATTTGAGTCGCGAGCA
____________________________________________________________
consensus AAAAATCGCCAGATCTTGTTCTCATCTGGCGACTGGTCCGTGGAATTTGAGTCGCGAGCA
. : . : . : . : . : . :
rJMFF026C24+ GGGGATTAAGCTTCTGGCGAGCCGATTCAGAGAGGATTGTCTGTACATCTGCGATTGGCC
____________________________________________________________
consensus GGGGATTAAGCTTCTGGCGAGCCGATTCAGAGAGGATTGTCTGTACATCTGCGATTGGCC
. : . : . : . : . : . :
rJMFF026C24+ GGGGTGCCTTCATCTGGAGCAGAAGCGAAACTACATGCTTTTCCGAGGAATCTTCAAGAA
rJMFF042C04+ GAAACTACATGCTTTTCCGAGGAATCTTCAAGAA
____________________________________________________________
consensus GGGGTGCCTTCATCTGGAGCAGAAGCGAAACTACATGCTTTTCCGAGGAATCTTCAAGAA
. : . : . : . : . : . :
rJMFF026C24+ TTTCAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
rJMFF042C04+ TTTCAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
rJMFF050J17+ CAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
rJMFF041J14+ CAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
____________________________________________________________
consensus TTTCAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
. : . : . : . : . : . :
rJMFF026C24+ GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
rJMFF042C04+ GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
rJMFF050J17+ GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
JMFS118D03- AGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
rJMFF041J14+ GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
____________________________________________________________
consensus GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
. : . : . : . : . : . :
rJMFF026C24+ AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
rJMFF042C04+ AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
rJMFF050J17+ AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
JMFS118D03- AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
rJMFF041J14+ AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
____________________________________________________________
consensus AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
. : . : . : . : . : . :
rJMFF026C24+ TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
rJMFF042C04+ TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
rJMFF050J17+ TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
JMFS118D03- TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
rJMFF041J14+ TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
____________________________________________________________
consensus TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
. : . : . : . : . : . :
rJMFF026C24+ TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
rJMFF042C04+ TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
rJMFF050J17+ TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
rJMFF048B23+ AAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
JMFS118D03- TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
rJMFF041J14+ TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
____________________________________________________________
consensus TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
. : . : . : . : . : . :
rJMFF026C24+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
rJMFF042C04+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
rJMFF050J17+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
rJMFF048B23+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGCTTCTGGTGAT
JMFS118D03- CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
rJMFF041J14+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
____________________________________________________________
consensus CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
. : . : . : . : . : . :
rJMFF026C24+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
rJMFF042C04+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
rJMFF050J17+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
rJMFF048B23+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
JMFS118D03- GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
rJMFF041J14+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
____________________________________________________________
consensus GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
. : . : . : . : . : . :
rJMFF026C24+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
rJMFF042C04+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
rJMFF050J17+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
rJMFF048B23+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
JMFS118D03- TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
rJMFF041J14+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
____________________________________________________________
consensus TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
. : . : . : . : . : . :
rJMFF026C24+ TTGAAGGTTTGCACTGCACTTTTGTTGATT
rJMFF042C04+ TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
rJMFF050J17+ TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
rJMFF048B23+ TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
JMFS118D03- TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
rJMFF041J14+ TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
____________________________________________________________
consensus TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
. : . : . : . : . : . :
rJMFF042C04+ CCAAGTGCAAACTGC
rJMFF050J17+ CCAAGTGCAAACTGC
rJMFF048B23+ CCAAGTGCAAACTGCAAACACCCCCTTTGCAATTATTA
JMFS118D03- CCAAGTGCAAACTGCAAACACCCCCTTTGCAATTATTA
rJMFF041J14+ CCAAGTGCAAACTGCAAACACCCCCTTTGCAATTATTATATATGTTTCTTTAAAAAAAAT
____________________________________________________________
consensus CCAAGTGCAAACTGCAAACACCCCCTTTGCAATTATTATATATGTTTCTTTAAAAAAAAT