Contig 012396:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025K02Sequence517008848 (4)ref|XP_004232295.1|5e-54PREDICTED: protease Do-like 1, chloroplastic [Solanum lycopersicum]696012396 (4)ref|XP_010243027.1|1e-68PREDICTED: protease Do-like 1, chloroplastic isoform X1 [Nelumbo nucifera]
JMFF040K10Sequence556008848 (4)ref|XP_004232295.1|8e-51PREDICTED: protease Do-like 1, chloroplastic [Solanum lycopersicum]779012396 (4)gb|ACZ74706.1|4e-98serine-type peptidase [Phaseolus vulgaris]
JMSF044O22Sequence773008848 (4)ref|XP_004232295.1|2e-108PREDICTED: protease Do-like 1, chloroplastic [Solanum lycopersicum]666012396 (4)ref|XP_009614636.1|3e-115PREDICTED: protease Do-like 1, chloroplastic [Nicotiana tomentosiformis]
JMSF050D23Sequence654008848 (4)ref|XP_004232295.1|6e-79PREDICTED: protease Do-like 1, chloroplastic [Solanum lycopersicum]683012396 (4)ref|XP_010243027.1|1e-68PREDICTED: protease Do-like 1, chloroplastic isoform X1 [Nelumbo nucifera]

Alignment

This contig is upended


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rJMSF044O22+                                ATCATACACTCACCACTGGTGTCATCAGTGGACTCAGA
                      ____________________________________________________________
consensus                                   ATCATACACTCACCACTGGTGTCATCAGTGGACTCAGA
 
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rJMSF044O22+          AGAGAAAATCAATTCTGCTGCAACTGGCCGCCCAATACAGGATGTTATCCAGACAGATGC
                      ____________________________________________________________
consensus             AGAGAAAATCAATTCTGCTGCAACTGGCCGCCCAATACAGGATGTTATCCAGACAGATGC
 
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rJMSF044O22+          TGCTATAAACCCAGGGAATAGTGGAGGGCCACTTCTTGATAGTTCAGGAAACCTTATTGG
                      ____________________________________________________________
consensus             TGCTATAAACCCAGGGAATAGTGGAGGGCCACTTCTTGATAGTTCAGGAAACCTTATTGG
 
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rJMSF044O22+          AATAAACACAGCTATATACTCCCCTTCAGGTGCATCATCAGGTGTTGGATTTTCTATTCC
                      ____________________________________________________________
consensus             AATAAACACAGCTATATACTCCCCTTCAGGTGCATCATCAGGTGTTGGATTTTCTATTCC
 
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rJMSF044O22+          AGTTGACACAGTAAGTGGCATTGTTGATCAGTTGGTAAAGTTTGGGAAAGTCACCAGACC
rJMSF050D23+                    GTAAGTGGCATTGTTGATCAGTTGGTAAAGTTTGGGAAAGTCACCAGACC
rJMFF025K02+                    GTAAGTGGCATTGTTGATCAGTTGGTAAAGTTTGGGAAAGTCACCAGACC
rJMFF040K10+                    GTAAGTGGCATTGTTGATCAGTTGGTAAAGTTTGGGAAAGTCACCAGACC
                      ____________________________________________________________
consensus             AGTTGACACAGTAAGTGGCATTGTTGATCAGTTGGTAAAGTTTGGGAAAGTCACCAGACC
 
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rJMSF044O22+          AATTCTGGGAATTAAATTTGCCCCAGATCAGTCTGTAGAGCAACTTGGAGTTAGTGGGGT
rJMSF050D23+          AATTCTGGGAATTAAATTTGCCCCAGATCAGTCTGTAGAGCAACTTGGAGTTAGTGGGGT
rJMFF025K02+          AATTCTGGGAATTAAATTTGCCCCAGATCAGTCTGTAGAGCAACTTGGAGTTAGTGGGGT
rJMFF040K10+          AATTCTGGGAATTAAATTTGCCCCAGATCAGTCTGTAGAGCAACTTGGAGTTAGTGGGGT
                      ____________________________________________________________
consensus             AATTCTGGGAATTAAATTTGCCCCAGATCAGTCTGTAGAGCAACTTGGAGTTAGTGGGGT
 
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rJMSF044O22+          GCTTGTCTTGGATGCTCCTCCAAATGGTCCAGCTGGGAAAGCAGGGCTTCAATCTACTAA
rJMSF050D23+          GCTTGTCTTGGATGCTCCTCCAAATGGTCCAGCTGGGAAAGCAGGGCTTCAATCTACTAA
rJMFF025K02+          GCTTGTCTTGGATGCTCCTCCAAATGGTCCAGCTGGGAAAGCAGGGCTTCAATCTACTAA
rJMFF040K10+          GCTTGTCTTGGATGCTCCTCCAAATGGTCCAGCTGGGAAAGCAGGGCTTCAATCTACTAA
                      ____________________________________________________________
consensus             GCTTGTCTTGGATGCTCCTCCAAATGGTCCAGCTGGGAAAGCAGGGCTTCAATCTACTAA
 
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rJMSF044O22+          GCGCGATTCCTATGGCAGACTTGTTTTGGGTGATATCATTACTTCTGTAAATGGTAAAAA
rJMSF050D23+          GCGCGATTCCTATGGCAGACTTGTTTTGGGTGATATCATTACTTCTGTAAATGGTAAAAA
rJMFF025K02+          GCGCGATTCCTATGGCAGACTTGTTTTGGGTGATATCATTACTTCTGTAAATGGTAAAAA
rJMFF040K10+          GCGCGATTCCTATGGCAGACTTGTTTTGGGTGATATCATTACTTCTGTAAATGGTAAAAA
                      ____________________________________________________________
consensus             GCGCGATTCCTATGGCAGACTTGTTTTGGGTGATATCATTACTTCTGTAAATGGTAAAAA
 
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rJMSF044O22+          AGTCTCTAATGGCACTGATTTGTACAGAATTCTTGACCAATGCAAAGTGGGTGAAAAGGT
rJMSF050D23+          AGTCTCTAATGGCACTGATTTGTACAGAATTCTTGACCAATGCAAAGTGGGTGAAAAGGT
rJMFF025K02+          AGTCTCTAATGGCACTGATTTGTACAGAATTCTTGACCAATGCAAAGTGGGTGAAAAGGT
rJMFF040K10+          AGTCTCTAATGGCACTGATTTGTACAGAATTCTTGACCAATGCAAAGTGGGTGAAAAGGT
                      ____________________________________________________________
consensus             AGTCTCTAATGGCACTGATTTGTACAGAATTCTTGACCAATGCAAAGTGGGTGAAAAGGT
 
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rJMSF044O22+          GATTGTGGAAGTCTTGCGTGGTGACAAAAAGGAAAAGATTCCTGTAATCCTGGAACCAAA
rJMSF050D23+          GATTGTGGAAGTCTTGCGTGGTGACAAAAAGGAAAAGATTCCTGTAATCCTGGAACCAAA
rJMFF025K02+          GATTGTGGAAGTCTTGCGTGGTGACAAAAAGGAAAAGATTCCTGTAATCCTGGAACCAAA
rJMFF040K10+          GATTGTGGAAGTCTTGCGTGGTGACAAAAAGGAAAAGATTCCTGTAATCCTGGAACCAAA
                      ____________________________________________________________
consensus             GATTGTGGAAGTCTTGCGTGGTGACAAAAAGGAAAAGATTCCTGTAATCCTGGAACCAAA
 
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rJMSF044O22+          GCCTGATGAATCATAAGAGGTTAGGAGGCTGAATTGGATGAGTAACGTTAAACTTGCTGT
rJMSF050D23+          GCCTGATGAATCATAAGAGGTTAGGAGGCTGAATTGGATGAGTAACGTTAAACTTGCTGT
rJMFF025K02+          GCCTGATGAATCATAAGAGGTTAGGAGGCTGAATTGGATGAGTAACGTTAAACTTGCTGT
rJMFF040K10+          GCCTGATGAATCATAAGAGGTTAGGAGGCTGAATTGGATGAGTAACGTTAAACTTGCTGT
                      ____________________________________________________________
consensus             GCCTGATGAATCATAAGAGGTTAGGAGGCTGAATTGGATGAGTAACGTTAAACTTGCTGT
 
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rJMSF044O22+          ATTTATAAAATAAATCTCCCTATACTAA                                
rJMSF050D23+          ATTTATAAAATAAATCTCCCTATACTAATTGTTTCTTGATATCTAAATTGTGTACATAAA
rJMFF025K02+          ATTTATAAAATAAATCTCCCTATACTAATTGTTTCTTGATATCTAAATTGTGTACAAAAA
rJMFF040K10+          ATTTATAAAATAAATCTCCCTATACTAATTGTTTCTTGATATCTAAATTGTGTACATAAA
                      ____________________________________________________________
consensus             ATTTATAAAATAAATCTCCCTATACTAATTGTTTCTTGATATCTAAATTGTGTACATAAA
 
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rJMSF050D23+          AA                                                          
rJMFF025K02+          AA                                                          
rJMFF040K10+          AAATATACTGTATGGCAACACACTTTCGTTCCGCCCCCTTTACCATCGGACACTGCAGGT
                      ____________________________________________________________
consensus             AAATATACTGTATGGCAACACACTTTCGTTCCGCCCCCTTTACCATCGGACACTGCAGGT
 
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rJMFF040K10+          ATATATTTTTCGACCTGATGTCTTCGTTAATATTAATGGGCAAATTTGTAAACCTAACAG
                      ____________________________________________________________
consensus             ATATATTTTTCGACCTGATGTCTTCGTTAATATTAATGGGCAAATTTGTAAACCTAACAG