Contig 012394:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014B24Sequence488012394 (12)ref|XP_010278125.1|3e-79PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]698012394 (12)ref|XP_010278125.1|1e-90PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]
JMFF015A12Sequence249012394 (12)gb|ACN30872.1|1e-18unknown [Zea mays]
JMFF018F22Sequence598012394 (12)ref|XP_010278125.1|3e-91PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]676012394 (12)ref|XP_010278125.1|8e-91PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]
JMFF028L22Sequence585012394 (12)ref|XP_010278125.1|5e-90PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]702012394 (12)ref|XP_010278125.1|2e-89PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]
JMFF040E14Sequence487012394 (12)ref|XP_010278125.1|3e-79PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]675012394 (12)ref|XP_010278125.1|8e-91PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]
JMFF042M22Sequence610012394 (12)ref|XP_010278125.1|4e-91PREDICTED: 40S ribosomal protein S15-like [Nelumbo nucifera]590012394 (12)ref|XP_002517015.1|3e-7840S ribosomal protein S15, putative [Ricinus communis] gb|EEF45178.1| 40S riboso
JMFN005K04Sequence590012394 (12)ref|XP_002517015.1|1e-9140S ribosomal protein S15, putative [Ricinus communis] gb|EEF45178.1| 40S riboso

Alignment

This contig is upended


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rJMFF014B24+                                                 ATCTCCGCTTAAAACCCTAGC
JMFF040E14-                                                  ATCTCCGCTTAAAACCCTAGC
JMFF018F22-                                                  ATCTCCGCTTAAAACCCTAGC
rJMFF028L22+                                                     CCGCTTAAAACCCTAGC
JMFF028L22-                                                  ATCTCCGCTTAAAACCCTAGC
JMFF014B24-                                                  ATCTCCGCTTAAAACCCTAGC
JMFF042M22-                                                TTATCTCCGCTTAAAACCCTAGC
JMFN005K04-                                                                   TAGC
rJMFF018F22+                                                 ATCTCCGCTTAAAACCCTAGC
rJMFF040E14+                                                       GCTTAAAACCCTAGC
                      ____________________________________________________________
consensus                                                  TTATCTCCGCTTAAAACCCTAGC
 
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rJMFF014B24+          TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
JMFF040E14-           TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
JMFF018F22-           TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
rJMFF028L22+          TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
JMFF028L22-           TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
JMFF014B24-           TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
JMFF042M22-           TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
JMFN005K04-           TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
rJMFF018F22+          TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
rJMFF040E14+          TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
                      ____________________________________________________________
consensus             TGTGTCCCCTTCCAGAGTTCCAGAGCACCCCTGCAGCTTTCGGATTTCGCATCCACAACA
 
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rJMFF014B24+          ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
JMFF040E14-           ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
rJMFF042M22+                                                                    AG
JMFF018F22-           ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
rJMFF028L22+          ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
JMFF028L22-           ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
JMFF014B24-           ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
JMFF042M22-           ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
JMFN005K04-           ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
rJMFF018F22+          ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
rJMFF040E14+          ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
                      ____________________________________________________________
consensus             ATGGCGGACGTAGAGCACGACGTGGCTCCCGGACAGCCGAAGAAGAGGACGTTCAAGAAG
 
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rJMFF014B24+          TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
JMFF040E14-           TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
rJMFF042M22+          TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
rJMFF015A12+                                                            CGAGCTTGNG
JMFF018F22-           TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
rJMFF028L22+          TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
JMFF028L22-           TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
JMFF014B24-           TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
JMFF042M22-           TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
JMFN005K04-           TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
rJMFF018F22+          TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
rJMFF040E14+          TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
                      ____________________________________________________________
consensus             TTCAGCTTCAGAGGCGTGGATCTCGATACTCTGCTCGACATGTCAACGGACGAGCTTGTG
 
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rJMFF014B24+          AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
JMFF040E14-           AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
rJMFF042M22+          AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
rJMFF015A12+          AAACTTTTCAGTGCTCGCGCCCGCAGAAGGTTTGCGAGGGNCTTGAAGAGGAAGCCAATG
JMFF018F22-           AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
rJMFF028L22+          AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
JMFF028L22-           AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
JMFF014B24-           AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
JMFF042M22-           AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
JMFN005K04-           AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
rJMFF018F22+          AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
rJMFF040E14+          AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
                      ____________________________________________________________
consensus             AAACTTTTCACTGCTCGCGCCCGCAGAAGGTTTGCGAGGGGCTTGAAGAGGAAGCCAATG
 
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rJMFF014B24+          GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
JMFF040E14-           GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
rJMFF042M22+          GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
rJMFF015A12+          GCATTGATTNAGAAGCTTCGCAAGGNGAAANGCGAGGCTCCACCTGGTGAGAAACCAGAG
JMFF018F22-           GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
rJMFF028L22+          GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
JMFF028L22-           GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
JMFF014B24-           GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
JMFF042M22-           GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
JMFN005K04-           GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
rJMFF018F22+          GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
rJMFF040E14+          GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
                      ____________________________________________________________
consensus             GCATTGATTAAGAAGCTTCGCAAGGCGAAACGCGAGGCTCCACCTGGTGAGAAACCAGAG
 
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rJMFF014B24+          CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
JMFF040E14-           CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
rJMFF042M22+          CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
rJMFF015A12+          CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCGTGAGATGATTGGAAGTGTCATN
JMFF018F22-           CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
rJMFF028L22+          CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
JMFF028L22-           CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
JMFF014B24-           CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
JMFF042M22-           CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
JMFN005K04-           CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
rJMFF018F22+          CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
rJMFF040E14+          CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
                      ____________________________________________________________
consensus             CCTGTTAAGACTCATTTGAGGAACATGATTATTGTTCCTGAGATGATTGGAAGTGTCATT
 
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rJMFF014B24+          GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
JMFF040E14-           GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
rJMFF042M22+          GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
rJMFF015A12+          GGTGTTTACAACGGGAAAACCNTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCA 
JMFF018F22-           GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
rJMFF028L22+          GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
JMFF028L22-           GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
JMFF014B24-           GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
JMFF042M22-           GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
JMFN005K04-           GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
rJMFF018F22+          GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
rJMFF040E14+          GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
                      ____________________________________________________________
consensus             GGTGTTTACAACGGGAAAACCTTTAACCAGATTGAAGTCAAGCCCGAGATGATTGGGCAC
 
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rJMFF014B24+          TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGT
JMFF040E14-           TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTA              
rJMFF042M22+          TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGT
JMFF018F22-           TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGT
rJMFF028L22+          TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCGCGGTAGGCCCGGTATTGGT
JMFF028L22-           TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCGCGGTAGGCCCGGTATTGGT
JMFF014B24-           TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAG             
JMFF042M22-           TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGT
JMFN005K04-           TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGT
rJMFF018F22+          TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGT
rJMFF040E14+          TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGT
                      ____________________________________________________________
consensus             TACTTGGCCGAGTTCTCAATCTCGTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGT
 
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rJMFF014B24+          GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCA                    
rJMFF042M22+          GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCA                    
JMFF018F22-           GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCATGCACCTGAATTTAAATGCT
rJMFF028L22+          GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCA                    
JMFF028L22-           GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCATGCACCTGAATTTAAATGCT
JMFF042M22-           GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCATGCACCTGAATTTAAATGCT
JMFN005K04-           GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCATGCACCTGAATTTAAATGCT
rJMFF018F22+          GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCATGCACCTGAATTTAAATGCT
rJMFF040E14+          GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCATGCACCTGAATTTAAATGCT
                      ____________________________________________________________
consensus             GCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGATGCATGCACCTGAATTTAAATGCT
 
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JMFF018F22-           TCTCTATGGACCATATACCTTCTGTTACAGTTTTGAT                       
JMFF028L22-           TCTCTATGGACCATATACCTTCTG                                    
JMFF042M22-           TCTCTATGGACCATATACCTTCTGTTACAGTTTTGATCACACATGTT             
JMFN005K04-           TCTCTATGGACCATATACCTTCTGTTACAGTTTTGATCACACATGT              
rJMFF018F22+          TCTCTATGGACCATATACCTTCTGTTACAGTTTTGATCACACATGTTGTGTTGACTTTAG
rJMFF040E14+          TCTCTATGGACCATATACCTTCTGTTACAGTTTTGATCACACATGTTGTGTTGACTTTAG
                      ____________________________________________________________
consensus             TCTCTATGGACCATATACCTTCTGTTACAGTTTTGATCACACATGTTGTGTTGACTTTAG
 
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rJMFF018F22+          TTTAATGAACAATTTGCTTTTATGACTAATATTTATGCGTTGTTGTACCATACAT     
rJMFF040E14+          TTTAATGAACAATTTGCTTTTATGACTAATATTTATGCGTTGTTGTACCATACATTGAAA
                      ____________________________________________________________
consensus             TTTAATGAACAATTTGCTTTTATGACTAATATTTATGCGTTGTTGTACCATACATTGAAA