| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003G20 | Sequence | 481 | 012393 (8) | ref|XP_009611771.1| | 8e-97 | PREDICTED: ras-related protein Rab7 [Nicotiana tomentosiformis] ref|XP_009764140 | 802 | 012393 (8) | emb|CDO98034.1| | 1e-126 | unnamed protein product [Coffea canephora] |
| JMFF040C10 | Sequence | 509 | 012393 (8) | gb|AJG06868.1| | 3e-86 | Rab GTPase [Nicotiana benthamiana] | 773 | 012393 (8) | emb|CDO98034.1| | 6e-132 | unnamed protein product [Coffea canephora] |
| JMSF009K14 | Sequence | 427 | 012393 (8) | ref|XP_004235664.1| | 8e-77 | PREDICTED: ras-related protein Rab7 [Solanum lycopersicum] ref|XP_006343066.1| P | 792 | 012393 (8) | emb|CDO98034.1| | 2e-131 | unnamed protein product [Coffea canephora] |
| JMSF023B24 | Sequence | 599 | 012393 (8) | ref|NP_001274838.1| | 9e-86 | uncharacterized protein LOC102577689 [Solanum tuberosum] ref|XP_004230949.1| PRE | |||||
| JMSF030G20 | Sequence | 607 | 003276 (5) | ref|XP_009778724.1| | 3e-77 | PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Nicotiana | 428 | 012393 (8) | ref|XP_008462166.1| | 1e-49 | PREDICTED: ras-related protein Rab7 [Cucumis melo] |
This contig is upended
. : . : . : . : . : . :
JMSF023B24- GTCGCTGCAAATTTTCCAACTGCAGCCACCCCTGATTCCTTGACTAGTGTTT
____________________________________________________________
consensus GTCGCTGCAAATTTTCCAACTGCAGCCACCCCTGATTCCTTGACTAGTGTTT
. : . : . : . : . : . :
JMSF023B24- TTTTGGTCTATAATTAATTAATTATTTATAATTTTAAAAAAGGAGAAAAATACATTCATA
____________________________________________________________
consensus TTTTGGTCTATAATTAATTAATTATTTATAATTTTAAAAAAGGAGAAAAATACATTCATA
. : . : . : . : . : . :
JMSF023B24- AAGTCAACAGGCTCTCCCCCAGCGTCCTCTCAGTTGATTGCTAGAAGATTTTGGAATTGA
____________________________________________________________
consensus AAGTCAACAGGCTCTCCCCCAGCGTCCTCTCAGTTGATTGCTAGAAGATTTTGGAATTGA
. : . : . : . : . : . :
JMSF009K14- AATGGCTTCTCGCCGCCGTATGCTTCTCAAGGTCATAATCCTCGGTG
JMFF040C10- AATGGCTTCTCGCCGCCGTATGCTTCTCAAGGTCATAATCCTCGGTG
JMSF023B24- AGTTGCCGGAGAGAATGGCATCTCGACGGCGTACGCTTCTCAAGGTCATAATCCTCGGTG
JMFF003G20- AATGGCTTCTCGCCGCCGTATGCTTCTCAAGGTCATAATCCTCGGTG
rJMFF003G20+ GTATGCTTCTCAAGGTCATAATCCTCGGTG
rJMSF009K14+ AAGGTCATAATCCTCNGTG
____________________________________________________________
consensus AGTTGCCGGAGAGAATGGCTTCTCGCCGCCGTATGCTTCTCAAGGTCATAATCCTCGGTG
. : . : . : . : . : . :
JMSF009K14- ATAGCGGGGTTGGGAAGACGTCATTGATGAA-CCAGTATGTGAACCGTAAGTTTAGCAAT
JMFF040C10- ATAGCGGGGTTGGGAAGACGTCATTGATGAA-CCAGTATGTGAACCGTAAGTTTAGCAAT
JMSF023B24- ACAGCGGGGTGGGGAAGACTTCTCTGATGAA-CCAGTATGTGAATGGTAAGTTTAGCAAT
JMFF003G20- ATAGCGGGGTTGGGAAGACGTCATTGATGAA-CCAGTATGTGAACCGTAAGTTTAGCAAT
rJMFF003G20+ ATAGCGGGGTTGGGAAGACGTCATTGATGAACCCAGTATGTGAACCGTAAGTTTAGCAAT
rJMSF009K14+ ATAG-CGGGGTGGGAAGACGTCATTGATGAA-CCAGTATGTGAACCGTAAGTTTAGCAAT
rJMFF040C10+ GGGGTTGGGAAGACGTCATTGATGAA-CCAGTATGTGANCCGTAAGTTTAGCAAT
____________________________________________________________
consensus ATAGCGGGGTTGGGAAGACGTCATTGATGAA-CCAGTATGTGAACCGTAAGTTTAGCAAT
. : . : . : . : . : . :
JMSF009K14- CAATACAAAGCCACTATTGGAGCTGATTTCTTGACAAAAGAGGTTCAATTTGAAGATAGG
JMFF040C10- CAATACAAAGCCACTATTGGAGCTGATTTCTTGACAAAAGAGGTTCAATTTGAAGATAGG
JMSF023B24- CAATATAAAGCCACCATTGGAGCTGATTTCTTGACAAAAGAGGTTCAGTTTGAAGATAGA
JMFF003G20- CAATACAAAGCCACTATTGGAGCTGATTTCTTGACAAAAGAGGTTCAATTTGAAGATAGG
rJMFF003G20+ CAATACAAAGCCACTATTGGAGCTGATTTCTTGACAAAAGAGGTTCAATTTGAAGATAGG
rJMSF009K14+ CAATACAAAGCCACTATTGGAGCTGATTTCTTGACAAAAGAGGTTCAATTTGAAGATAGG
rJMFF040C10+ CAATACAAAGCCACTATTGGAGCTGATTTCTTGACAAAAGAGGTTCAATTTGAAGATAGG
____________________________________________________________
consensus CAATACAAAGCCACTATTGGAGCTGATTTCTTGACAAAAGAGGTTCAATTTGAAGATAGG
. : . : . : . : . : . :
JMSF009K14- TTGTACACATTGCAGATATGGGATACAGCTGGGCAAGAAAGGTTTCAGAGCCTAGGTGTT
JMFF040C10- TTGTACACATTGCAGATATGGGATACAGCTGGGCAAGAAAGGTTTCAGAGCCTAGGTGTT
JMSF023B24- TTGTACACGTTGCAGATATGGGATACAGCTGGGCAGGAAAGGTTTCAAAGCCTTGGAGTG
JMFF003G20- TTGTACACATTGCAGATATGGGATACAGCTGGGCAAGAAAGGTTTCAGAGCCTAGGTGTT
rJMFF003G20+ TTGTACACATTGCAGATATGGGATACAGCTGGGCAAGAAAGGTTTCAGAGCCTAGGTGTT
rJMSF009K14+ TTGTACACATTGCAGATATGGGATACAGCTGGGCAAGAAAGGTTTCAGAGCCTAGGTGTT
rJMFF040C10+ TTGTACACATTGCAGATATGGGATACAGCTGGGCAAGAAAGGTTTCAGAGCCTAGGTGTT
____________________________________________________________
consensus TTGTACACATTGCAGATATGGGATACAGCTGGGCAAGAAAGGTTTCAGAGCCTAGGTGTT
. : . : . : . : . : . :
JMSF009K14- GCATTTTATCGAGGAGCAGATTGTTGTGTTCTAGTGTATGATGTCAATGTCATGAAATCT
JMFF040C10- GCATTTTATCGAGGAGCAGATTGTTGTGTTCTAGTGTATGATGTCAATGTCATGAAATCT
JMSF023B24- GCTTTTTACAGAGGAGCTGATTGCTGTGTTCTAGTTTATGATGTCAATGCCTCGAAATCT
JMFF003G20- GCATTTTATCGAGGAGCAGATTGTTGTGTTCTAGTGTATGATGTCAATGTCATGAAATCT
rJMFF003G20+ GCATTTTATCGAGGAGCAGATTGTTGTGTTCTAGTGTATGATGTCAATGTCATGAAATCT
rJMSF009K14+ GCATTTTATCGAGGAGCAGATTGTTGTGTTCTAGTGTATGATGTCAATGTCATGAAATCT
rJMFF040C10+ GCATTTTATCGAGGAGCAGATTGTTGTGTTCTAGTGTATGATGTCAATGTCATGAAATCT
____________________________________________________________
consensus GCATTTTATCGAGGAGCAGATTGTTGTGTTCTAGTGTATGATGTCAATGTCATGAAATCT
. : . : . : . : . : . :
JMSF009K14- TTTGAGAATCTTAACAACTGGAGGGAAGAATTTCTAATCCAGGCCAGTCCCTCTGATCC
JMFF040C10- TTTGAGAATCTTAACAACTGGAGGGAAGAATTTCTAATCCAGGCCAGTCCCTCTGATCCT
JMSF023B24- TTCGAGAATCTTAACAACTGGCGGGAAGAGTTTCTAATTCAGGCCAGTCCCTTGGGTCGA
JMFF003G20- TTTGAGAATCTTAACAACTGGAGGGAAGAATTTCTAATCCAGGCCAGTCCCTCTGATCCT
rJMFF003G20+ TTTGAGAATCTTAACAACTGGAGGGAAGAATTTCTAATCCAGGCCAGTCCCTCTGATCCT
rJMSF009K14+ TTTGAGAATCTTAACAACTGGAGGGAAGAATTTCTAATCCAGGCCAGTCCCTCTGATCCT
rJMFF040C10+ TTTGAGAATCTTAACAACTGGAGGGAAGAATTTCTAATCCAGGCCAGTCCCTCTGATCCT
____________________________________________________________
consensus TTTGAGAATCTTAACAACTGGAGGGAAGAATTTCTAATCCAGGCCAGTCCCTCTGATCCT
. : . : . : . : . : . :
JMFF040C10- GAGAACTTCCCATTTGTTGTTTTGGGGAATAAG
JMSF023B24- GAAACCTTCCCATTTGTCGTTTTGGGTAATAAGATGGATGTTGATGGTGGCAATAGCCGG
JMFF003G20- GAGAACTTCCCATTTGTTGTTTTGGGGAATAAGGTAGATGTTGATGGTGGCAATAGTCGG
rJMFF003G20+ GAGAACTTCCCATTTGTTGTTTTGGGGAATAAGGTAGATGTTGATGGTGGCAATAGTCGG
rJMSF030G20+ GTTTTGGGGAATAAGGTAGATGTTGATGGTGGCAATNGTCGG
rJMSF009K14+ GAGAACTTCCCATTTGTTGTTTTGGGGAATAAGGTAGATGTTGATGGTGGCAATAGTCGG
rJMFF040C10+ GAGAACTTCCCATTTGTTGTTTTGGGGAATAAGGTAGATGTTGATGGTGGCAATAGTCGG
____________________________________________________________
consensus GAGAACTTCCCATTTGTTGTTTTGGGGAATAAGGTAGATGTTGATGGTGGCAATAGTCGG
. : . : . : . : . : . :
JMSF023B24- GTGGT
JMFF003G20- GTGGTTTCTGAGAAG
rJMFF003G20+ GTGGTTTCTGAGAAGAAAGCCAAGGCATGGTGTGCTTCTAAGGGAAATATACCTTACTTT
rJMSF030G20+ GTGGTTTCTGAGAAGAAAGCCAAGGCATGGTGTGCTTCTAAGGGAAATATACCTTACTTT
rJMSF009K14+ GTGGTTTCTGAGAAGAAAGCCAAGGCATGGTGTGCTTCTAAGGGAAATATACCTTACTTT
rJMFF040C10+ GTGGTTTCTGAGAAGAAAGCCAAGGCATGGTGTGCTTCTAAGGGAAATATACCTTACTTT
____________________________________________________________
consensus GTGGTTTCTGAGAAGAAAGCCAAGGCATGGTGTGCTTCTAAGGGAAATATACCTTACTTT
. : . : . : . : . : . :
rJMFF003G20+ GAAACATCTGCAAAGGAAGGATTCAACGTGGATGCAGCTTTTGAATGCATAGCCAAAAAT
rJMSF030G20+ GAAACATCTGCAAAGGAAGGATTCAACGTGGATGCAGCTTTTGAATGCATAGCCAAAAAT
rJMSF009K14+ GAAACATCTGCAAAGGAAGGATTCAACGTGGATGCAGCTTTTGAATGCATAGCCAAAAAT
rJMFF040C10+ GAAACATCTGCAAAGGAAGGATTCAACGTGGATGCAGCTTTTGAATGCATAGCCAAAAAT
____________________________________________________________
consensus GAAACATCTGCAAAGGAAGGATTCAACGTGGATGCAGCTTTTGAATGCATAGCCAAAAAT
. : . : . : . : . : . :
rJMFF003G20+ GCTCTCAAGAATGAACCTGAAGAAGAAATATATCTCCCAGACACCATTGATGTTGCGGGT
rJMSF030G20+ GCTCTCAAGAATGAACCTGAAGAAGAAATATATCTCCCAGACACCANCGACGTTGCGGGT
rJMSF009K14+ GCTCTCAAGAATGAACCTGAAGAAGAAATATATCTCCCAGACACCATTGATGTTGCGGGT
rJMFF040C10+ GCTCTCAAGAATGAACCTGAAGAAGAAATATATCTCCCAGACACCATTGATGTTGCGGGT
____________________________________________________________
consensus GCTCTCAAGAATGAACCTGAAGAAGAAATATATCTCCCAGACACCATTGATGTTGCGGGT
. : . : . : . : . : . :
rJMFF003G20+ GGGCATCAACAAAGATCAACAGGATGCGAGTGTTGAAGTGCTTTCTCATTTCAATGTCTG
rJMSF030G20+ GGGCATCAACAAAGATCAACAGNATGCGAGTGTTGAAGNGCTTTCTCNTTTCAANGTCNG
rJMSF009K14+ GGGCATCAACAAAGATCAACAGGATGCGAGTGTTGAAGTGCTTTCTCATTTCAATGTCTG
rJMFF040C10+ GGGCATCAACAAAGATCAACAGGATGCGAGTGTTGAAGTGCTTTCTCATTTCAATGTCTG
____________________________________________________________
consensus GGGCATCAACAAAGATCAACAGGATGCGAGTGTTGAAGTGCTTTCTCATTTCAATGTCTG
. : . : . : . : . : . :
rJMFF003G20+ TTTTCGGTCTGGAACGAATTCAGTAATTCAATTTGATTATATGCTGTTAA-TTGTAACCC
rJMSF030G20+ TCTTCGGTCTGGAACGAATNCAGTAATTCAATTNGATTATATNCTGTTAACTTGTAACCC
rJMSF009K14+ TTTTCGGTCTGGAACGAATTCAGTAATTCAATTTGATTATATGCTGTTAA-TTGTAACCC
rJMFF040C10+ TTTTCGGTCTGGAACGAATTCAGTAATTCAATTTGATTATATGCTGTTAA-TTGTAACCC
____________________________________________________________
consensus TTTTCGGTCTGGAACGAATTCAGTAATTCAATTTGATTATATGCTGTTAA-TTGTAACCC
. : . : . : . : . : . :
rJMFF003G20+ ATATCTAGTGTGTATGGTTGTGTAGTTTTAAGATTCTTGATTATCTCCAAGTGTAATTCA
rJMSF030G20+ ATATCTAGTGTGTATGGTTGTGTAGTTTTNAGATTCTTGATTATCTCCAAGTGTAATTCA
rJMSF009K14+ ATATCTAGTGTGTATGGTTGTGTAGTTTTAAGATTCTTGATTATCTCCAAGTGTAATTCA
rJMFF040C10+ ATATCTAGTGTGTATGGTTGTGTAGTTTTAAGATTCTTGATTATCTCCAAGTGTAATTCA
____________________________________________________________
consensus ATATCTAGTGTGTATGGTTGTGTAGTTTTAAGATTCTTGATTATCTCCAAGTGTAATTCA
. : . : . : . : . : . :
rJMFF003G20+ GGGGGTGATTAGTATTGGGATTCTTTTTTCTTCACTTGACGAATTACGGTG
rJMSF030G20+ GGGGGTGATTAGTATTGGG
rJMSF009K14+ GGGGGTGATTAGTATTGGGATTCTTTTTTCTTCACTTGACGAATTACGGTG
rJMFF040C10+ GGGGGTGATTAGTATTGGGATTCTTTTTTCTTCACTTGACGAATTACGGTGGTGTCTTTA
____________________________________________________________
consensus GGGGGTGATTAGTATTGGGATTCTTTTTTCTTCACTTGACGAATTACGGTGGTGTCTTTA