Contig 012387:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039B15-                       GGTTTTACACATCGACAATGTCTATCTTACCCCAACGTAGCCAGCCTT
JMFF007F01-                       GGTTTTACACATCGACAATGTCTATCTTACCCCAACGTAGCCAGCCTT
                      ____________________________________________________________
consensus                         GGTTTTACACATCGACAATGTCTATCTTACCCCAACGTAGCCAGCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039B15-           TCAGAACCTTACGCCGTGCCCCAAGTCGCTGCAACTCCGGCCGTTTCCCGGTTTCTTTAC
JMFF007F01-           TCAGAACCTTACGCCGTGCCCCAAGTCGCTGCAACTCCGGCCGTTTCCCGGTTTCTTTAC
                      ____________________________________________________________
consensus             TCAGAACCTTACGCCGTGCCCCAAGTCGCTGCAACTCCGGCCGTTTCCCGGTTTCTTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039B15-           ACGTCTACTGCTCCACCACCACCACCACTACCAAGCCACGGCCGCTGGTGGTTGAGCCGC
JMFF007F01-           ACGTCTACTGCTCCACCACCACCACCACTACCAAGCCACGGCCGCTGGTGGTTGAGCCGC
                      ____________________________________________________________
consensus             ACGTCTACTGCTCCACCACCACCACCACTACCAAGCCACGGCCGCTGGTGGTTGAGCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039B15-           CAGAGGTGGAATTGGAGTCAAGACTCTCGACCAATGCGGCTGAGTTTGCTAGTACTGCTA
JMFF007F01-           CAGAGGTGGAATTGGAGTCAAGACTCTCGACCAATGCGGCTGAGTTTGCTAGTACTGCTA
                      ____________________________________________________________
consensus             CAGAGGTGGAATTGGAGTCAAGACTCTCGACCAATGCGGCTGAGTTTGCTAGTACTGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039B15-           AAACGTTGCTCAATGATCCCAGCTTGAAATCAACATGGTCTCACCGTGCATGGGTGGCGT
JMFF007F01-           AAACGTTGCTCAATGATCCCAGCTTGAAATCAACATGGTCTCACCGTGCATGGGTGGCGT
                      ____________________________________________________________
consensus             AAACGTTGCTCAATGATCCCAGCTTGAAATCAACATGGTCTCACCGTGCATGGGTGGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039B15-           GTGGGTGCACCACCGTGCTGGTTTCTCTGGCCAAGTCCGTTGCCGGTGCGGCCACTTCAC
JMFF007F01-           GTGGGTGCACCACCGTGCTGGTTTCTCTGGCCAAGTCCGTTGCCGGTGCGGCCACTTCAC
rJMFF039B15+                                                                    AC
                      ____________________________________________________________
consensus             GTGGGTGCACCACCGTGCTGGTTTCTCTGGCCAAGTCCGTTGCCGGTGCGGCCACTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039B15-           ACGCTTGGTTCGAGCCC                                           
JMFF007F01-           ACGCTTGGTTCGAGCCCATTGTAGCAGGCTACATCGGGTACGTGCTGGCGGACCTCGGCT
rJMFF039B15+          ACGCTTGGTTCGAGCCCATTGTAGCAGGCTACATCGGGTACGTGCTGGCGGACNTCGGCT
                      ____________________________________________________________
consensus             ACGCTTGGTTCGAGCCCATTGTAGCAGGCTACATCGGGTACGTGCTGGCGGACCTCGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007F01-           CCGGAGTCTACCACTGGGGTATTGACAACTACGGCTCTGCCAAGACTCCGGTTTTCGGAA
rJMFF007F01+                        TGGGGTATTGACAACTACGGCTCTGCCAAGACTCCGGTTTTCGGAA
rJMFF039B15+          CCGGAGTCTACCACTGGGGTATTGACAACTACGGCTCTGCCAAGACTCCGGTTTTCGGAA
                      ____________________________________________________________
consensus             CCGGAGTCTACCACTGGGGTATTGACAACTACGGCTCTGCCAAGACTCCGGTTTTCGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007F01-           CCCAAATCGATGCCTTCCAAGGCCACCATAAATGGCCATGGACGATCACCA         
rJMFF007F01+          CCCAAATCGATGCCTTCCAAGGCCACCATAAATGGCCATGGACGATCACCAGGCGCGAGT
rJMFF039B15+          CCCAAATCGATGCCTTCCAAGGCCACCATAAATGGCCATGGACGATCACCAGGCGCGAGT
                      ____________________________________________________________
consensus             CCCAAATCGATGCCTTCCAAGGCCACCATAAATGGCCATGGACGATCACCAGGCGCGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          TCGCCAACAATCTGAGCGCCCTGGCGAAGGTGGTGATGTTCACTGTTCTTCCAATGGACC
rJMFF039B15+          TCGCCAACAATCTGAGCGCCCTGGCGAAGGTGGTGATGTTCACTGTTCTTCCAATGGACC
                      ____________________________________________________________
consensus             TCGCCAACAATCTGAGCGCCCTGGCGAAGGTGGTGATGTTCACTGTTCTTCCAATGGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          TTCTCAGCAATGATCCAGTTTTCCATGGCTTCATTGGGGTGTGCTCAGGCTGCATTATGT
rJMFF039B15+          TTCTCAGCAATGATCCAGTTTTCCATGGCTTCATTGGGGTGTGCTCAGGCTGCATTATGT
                      ____________________________________________________________
consensus             TTCTCAGCAATGATCCAGTTTTCCATGGCTTCATTGGGGTGTGCTCAGGCTGCATTATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          TTAGCCAGCAGTTCCATGCCTGGGCACACGGCACAAAGAGTAAGCTCCCGCCGCTAGTGG
rJMFF039B15+          TTAGCCAGCAGTTCCATGCCTGGGCACACGGCACAAAGAGTAAGCTCCCGCCGCTAGTGG
                      ____________________________________________________________
consensus             TTAGCCAGCAGTTCCATGCCTGGGCACACGGCACAAAGAGTAAGCTCCCGCCGCTAGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          TGGCGCTCCAGGACGCCGGAATCCTGGTTTCCCGGTCTCAGCACGCGGCGCACCACCGGC
rJMFF039B15+          TGGCGCTCCAGGACGCCGGAATCCTGGTTTCCCGGTCTCAGCACGCGGCGCACCACCGGC
                      ____________________________________________________________
consensus             TGGCGCTCCAGGACGCCGGAATCCTGGTTTCCCGGTCTCAGCACGCGGCGCACCACCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          CACCGTATAACAACAATTACTGCATTGTGAGTGGAGCTTGGAATGCGGTTTTGGATGAGC
rJMFF039B15+          CACCGTATAACAACAATTACTGCATTGTGAGTGGAGCTTGGAATGCGGTTTTGGATGAGC
                      ____________________________________________________________
consensus             CACCGTATAACAACAATTACTGCATTGTGAGTGGAGCTTGGAATGCGGTTTTGGATGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          TGAAGGTTTTCGAGGCATTAGAACTGGTTTTGTTCTTCAGGCTTGGAGTTCGACCCCGGT
rJMFF039B15+          TGAAGGTTTTCGAGGCATTAGAACTGGTTTTGTTCTTCAGGCTTGGAGTTCGACCCCGGT
                      ____________________________________________________________
consensus             TGAAGGTTTTCGAGGCATTAGAACTGGTTTTGTTCTTCAGGCTTGGAGTTCGACCCCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          CCTGGAGCGAACCGGATTCTGAATGGACAGAAGAGGAGGAACCTGAACCTCCTTCATTGC
rJMFF039B15+          CCTGGAGCGAACCGGATTCTGAATGGACAGAAGAGGAGGAACCTGAACCTCCTTCATTGC
                      ____________________________________________________________
consensus             CCTGGAGCGAACCGGATTCTGAATGGACAGAAGAGGAGGAACCTGAACCTCCTTCATTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          TTACTTCGCAAGGAGTTTGATTATTTCATTTTGGATTCATCATTGTATTGTTTTTACAAA
rJMFF039B15+          TTACTTCGCAAGGAGTTTGATTATTTCATTTTGGATTCATCATTGTATTGTTTTTACAAA
                      ____________________________________________________________
consensus             TTACTTCGCAAGGAGTTTGATTATTTCATTTTGGATTCATCATTGTATTGTTTTTACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007F01+          CAGTGCTTATAAT                                               
rJMFF039B15+          CAGTGCTTATAATTGACACAGGAGAAATGTTCATGTATGTATGGTTTCACAAATCAAAAA
                      ____________________________________________________________
consensus             CAGTGCTTATAATTGACACAGGAGAAATGTTCATGTATGTATGGTTTCACAAATCAAAAA