clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005O16 | Sequence | 481 | 001709 (23) | gb|AAR90846.1| | 8e-36 | lipoxygenase [Capsicum annuum] | 750 | 012375 (3) | ref|XP_004244890.1| | 319 | PREDICTED: probable linoleate 9S-lipoxygenase 5 [Solanum lycopersicum] |
JMFF030M17 | Sequence | 396 | 001709 (23) | ref|XP_009774053.1| | 84.0 | PREDICTED: probable linoleate 9S-lipoxygenase 5 [Nicotiana sylvestris] | 481 | 012375 (3) | emb|CAA64415.1| | 5e-66 | lipoxygenase (LOX) [Solanum lycopersicum] |
JMFF036E19 | Sequence | 489 | 000513 (328) | gb|AGL96414.1| | 1e-69 | 9-lipoxygenase, partial [Nicotiana benthamiana] | 739 | 012375 (3) | emb|CAA64415.1| | 2e-102 | lipoxygenase (LOX) [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMFF005O16+ GATTACTGCAACTTTTACTACAAGGATGATTCCATGGTTTT
rJMFF036E19+ AAGGATGATTCCATGGTTTT
____________________________________________________________
consensus GATTACTGCAACTTTTACTACAAGGATGATTCCATGGTTTT
. : . : . : . : . : . :
rJMFF005O16+ GCAGGACAAAGAGCTACAAAGCCTGGTGGACCGAAACTGTACAGAAGGGGCACGAGGACA
rJMFF036E19+ GCAGGACAAAGAGCTAC-AAGCCTGGTGGACCGAAACTGTACAGAAGGGGCACGAGGACA
____________________________________________________________
consensus GCAGGACAAAGAGCTACAAAGCCTGGTGGACCGAAACTGTACAGAAGGGGCACGAGGACA
. : . : . : . : . : . :
rJMFF005O16+ AGAAAAACGAGCCATGGTGGCCTAAAATGACCTCTCGCCAGGTCCTAATCGAGACCCTCA
rJMFF036E19+ AGAAAAACGAGCCATGGTGGCNTAAAATGACCTCTCGCCAGGTCCTAATCGAGACCCTCA
____________________________________________________________
consensus AGAAAAACGAGCCATGGTGGCCTAAAATGACCTCTCGCCAGGTCCTAATCGAGACCCTCA
. : . : . : . : . : . :
rJMFF005O16+ CAACCATCATCTGGATCTCTTCAGCCCTCCACGCAGCCGTCAATTTCGGGCAGTATTCCT
rJMFF036E19+ CAACCATCATCTGGATCTCTTCAGCCCTCCACGCAGCCGTCAATTTCGGGCAGTATTCCT
____________________________________________________________
consensus CAACCATCATCTGGATCTCTTCAGCCCTCCACGCAGCCGTCAATTTCGGGCAGTATTCCT
. : . : . : . : . : . :
rJMFF030M17+ CGCCCAACGTTGAGCCGCAGGTTCATGCCGGAGCCCGGGA
rJMFF005O16+ ACGCCGGCTACAACCCCTGCCGCCCAACGTTGAGCCGCAGGTTCATGCCGGAGCCCGGGA
rJMFF036E19+ ACGCCGGCTACAACCCCTGCCGCCCAACGTTGAGCCGCAGGTTCATGCCGGAGCCCGGGA
____________________________________________________________
consensus ACGCCGGCTACAACCCCTGCCGCCCAACGTTGAGCCGCAGGTTCATGCCGGAGCCCGGGA
. : . : . : . : . : . :
rJMFF030M17+ CGCCCGAGTACGAGGAACTGAAAACCAACCCGGATAAGGCATTCCTGGAAACGATCACTG
rJMFF005O16+ CGCCCGAGTACGAGGAACTGAAAACCAACCCGGATAAGGCATTCCTGGAAACGATCACTG
rJMFF036E19+ CGCCCGAGTACGAGGAACTGAAAACCAACCCGGATAAGGCATTCCTGGAAACGATCACTG
____________________________________________________________
consensus CGCCCGAGTACGAGGAACTGAAAACCAACCCGGATAAGGCATTCCTGGAAACGATCACTG
. : . : . : . : . : . :
rJMFF030M17+ CCCAGTTCCAAACCCTGCTGGGGATTTCCCTGATTGAGATCCTGTCCAGGCACGCTTCCG
rJMFF005O16+ CCCAGTTCCAAACCCTGCTGGGGATTTCCCTGATTGAGATCCTGTCCAGGCACGCTTCCG
rJMFF036E19+ CCCAGTTCCAAACCCTGCTGGGGATTTCCCTGATTGAGATCCTGTCCAGGCACGCTTCCG
____________________________________________________________
consensus CCCAGTTCCAAACCCTGCTGGGGATTTCCCTGATTGAGATCCTGTCCAGGCACGCTTCCG
. : . : . : . : . : . :
rJMFF030M17+ ATGAGATTTACCTCGGGCAAAGAGAGCACCCGGAGTGGACGAGCGACAAACACGTTCTGG
rJMFF005O16+ ATGAGATTTACCTCGGGCAAAGAGAGCACCCGGAGTGGACGAGCGACAAACACGTTCTGG
rJMFF036E19+ ATGAGATTTACCTCGGGCAAAGAGAGCACCCGGAGTGGACGAGCGACAAACACGTTCTGG
____________________________________________________________
consensus ATGAGATTTACCTCGGGCAAAGAGAGCACCCGGAGTGGACGAGCGACAAACACGTTCTGG
. : . : . : . : . : . :
rJMFF030M17+ ACGCGTTTGAGAGATTTGGGAAGAAACTAGCCGCCATTGAGGACCGTATACTAGCCATGA
rJMFF005O16+ ACGCGTTTGAGAGATTTGGGAAGAAACTAGCCGCCATTGAGGACCGTATACTAGCCATGA
rJMFF036E19+ ACGCGTTTGAGAGATTTGGGAAGAAACTAGCCGCCATTGAGGACCGTATACTAGCCATGA
____________________________________________________________
consensus ACGCGTTTGAGAGATTTGGGAAGAAACTAGCCGCCATTGAGGACCGTATACTAGCCATGA
. : . : . : . : . : . :
rJMFF030M17+ ATGATGATCAGAAATGGAGGAACAGAACCGGGCCTGTTAAGGTCCCCTACACTTTGCTCT
rJMFF005O16+ ATGATGATCAGAAATGGAGGAACAGAACCGGGCCTGTTAAGGTCCCCTACACTTTGCTCT
rJMFF036E19+ ATGATGATCAGAAATGGAGGAACAGAACCGGGCCTGTTAAGGTCCCCTACACTTTGCTCT
____________________________________________________________
consensus ATGATGATCAGAAATGGAGGAACAGAACCGGGCCTGTTAAGGTCCCCTACACTTTGCTCT
. : . : . : . : . : . :
rJMFF030M17+ TCCCAACAAGTGAAGGAGGGCTCACCGGAAGAGGAATTCCTAACAGCATTTCTATATAAT
rJMFF005O16+ TCCCAACAAGTGAAGGAGGGCTCACCGGAAGAGGAATTCCTAACAGCATTTCTATATAAT
rJMFF036E19+ TCCCAACAAGTGAAGGAGGGCTCACCGGAAGAGGAATTCCTAACAGCATTTCTATATAAT
____________________________________________________________
consensus TCCCAACAAGTGAAGGAGGGCTCACCGGAAGAGGAATTCCTAACAGCATTTCTATATAAT
. : . : . : . : . : . :
rJMFF030M17+ TCTTTCAATTCGAAACATCTGATCTATGCTCTTAATCTTTGACTGTTTAAGTGTGCTGTT
rJMFF005O16+ TCTTTCAATTCGAAACATCTGATCTATGCTCTTAATCTTTGACTGTTTAAGTGTGCTGTT
rJMFF036E19+ TCTTTCAATTCGAAACATCTTATCTATGCTCTTAATCTTTGACTGTTTAAGTGTGCTGTT
____________________________________________________________
consensus TCTTTCAATTCGAAACATCTGATCTATGCTCTTAATCTTTGACTGTTTAAGTGTGCTGTT
. : . : . : . : . : . :
rJMFF030M17+ TCTGCATATTTCTTGCTTTCC
rJMFF005O16+ TCTGCATATTTCTTGCTTTCCTTTTTCCTGCAATGTACCACATCATCAT
rJMFF036E19+ TCTGCATATTTCTTGCTTTCCTTTTTCCTGCAATGTACCACATCATCATTATAANAAAAG
____________________________________________________________
consensus TCTGCATATTTCTTGCTTTCCTTTTTCCTGCAATGTACCACATCATCATTATAANAAAAG