Contig 012374:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036D08Sequence531009267 (3)gb|KJB34287.1|6e-47hypothetical protein B456_006G057400 [Gossypium raimondii]754012374 (2)ref|XP_009790424.1|1e-79PREDICTED: cyclin-dependent kinase D-2-like isoform X2 [Nicotiana sylvestris]
JMSF015C02Sequence374009267 (3)ref|XP_004245588.1|1e-14PREDICTED: cyclin-dependent kinase D-3-like [Solanum lycopersicum]805012374 (2)ref|XP_009591212.1|6e-74PREDICTED: cyclin-dependent kinase D-3-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF015C02+ TTA
                      ____________________________________________________________
consensus TTA
 
. : . : . : . : . : . :
rJMSF015C02+ TGGCCAGCTCAAGCTGCTGACTTTGGNTAGCCCGTTTATTGGCAGCCCAGACAGAAGATT
                      ____________________________________________________________
consensus TGGCCAGCTCAAGCTGCTGACTTTGGNTAGCCCGTTTATTGGCAGCCCAGACAGAAGATT
 
. : . : . : . : . : . :
rJMSF015C02+ TACTAATAAGGTCTTTGCCACATGGTATAGAGCACCAGAGTTATTGTTTGGTGCCAAGCA
rJMFF036D08+ GTATAGAGCACCAGAGTTATTGTTTGGTGCCAAGCA
                      ____________________________________________________________
consensus TACTAATAAGGTCTTTGCCACATGGTATAGAGCACCAGAGTTATTGTTTGGTGCCAAGCA
 
. : . : . : . : . : . :
rJMSF015C02+ ATATGGATCTGGAGTTGACATATGGGCTGCTGCTTGTATTTTTGCCGAACTACTTCTACG
rJMFF036D08+ ATATGGATCTGGAGTTGACATATGGGCTGCTGCTTGTATTTTTGCCGAACTACTTCTACG
                      ____________________________________________________________
consensus ATATGGATCTGGAGTTGACATATGGGCTGCTGCTTGTATTTTTGCCGAACTACTTCTACG
 
. : . : . : . : . : . :
rJMSF015C02+ AAGACCCTTTCTGCAGGGGAACAGTGACATTGATCAGCTGGGAAAGATTTTTGCAGTTTT
rJMFF036D08+ AAGACCCTTTCTGCAGGGGAACAGTGACATTGATCAGCTGGGAAAGATTTTTGCAGTTTT
                      ____________________________________________________________
consensus AAGACCCTTTCTGCAGGGGAACAGTGACATTGATCAGCTGGGAAAGATTTTTGCAGTTTT
 
. : . : . : . : . : . :
rJMSF015C02+ TGGTACCCCAAAACAATCCCAGTGGCCTAACCTGATTTACCTGCCTGATTATGTGGAGTT
rJMFF036D08+ TGGTACCCCAAAACAATCCCAGTGGCCTAACCTGATTTACCTGCCTGATTATGTGGAGTT
                      ____________________________________________________________
consensus TGGTACCCCAAAACAATCCCAGTGGCCTAACCTGATTTACCTGCCTGATTATGTGGAGTT
 
. : . : . : . : . : . :
rJMSF015C02+ CCAATATGTTCCAGGACAGCCTCTGCGCACTCTATTTCCTTTGGCTAGTGATGATGCTCT
rJMFF036D08+ CCAATATGTTCCAGGACAGCCTCTGCGCACTCTATTTCCTTTGGCTAGTGATGATGCTCT
                      ____________________________________________________________
consensus CCAATATGTTCCAGGACAGCCTCTGCGCACTCTATTTCCTTTGGCTAGTGATGATGCTCT
 
. : . : . : . : . : . :
rJMSF015C02+ AGATCTATTGACAAAGATGTTTGCTGTATGATCCGAAAGCTAGGATTTCAGCACAGCAGG
rJMFF036D08+ AGATCTATTGACAAAGATGTTT-CTGTATGATCCGAAAGCTAGGATTTCAGCACAGCAGG
                      ____________________________________________________________
consensus AGATCTATTGACAAAGATGTTTGCTGTATGATCCGAAAGCTAGGATTTCAGCACAGCAGG
 
. : . : . : . : . : . :
rJMSF015C02+ CATTGGAACACCGGTACTTTTCATCTCTCCCTCCACCAACTGAGCCAGCTTTGCTCCCGA
rJMFF036D08+ CATTGGAACACCGGTACTTTTCATCTCTCCCTCCACCAACTGAGCCAGCTTTGCTCCCGA
                      ____________________________________________________________
consensus CATTGGAACACCGGTACTTTTCATCTCTCCCTCCACCAACTGAGCCAGCTTTGCTCCCGA
 
. : . : . : . : . : . :
rJMSF015C02+ GACCTCCACCGAAGCGGGATTCAGAAAACCCAGTTTCAGATNTTAATGTGCAAGATGGAC
rJMFF036D08+ GACCTCCACCGAAGCGGGATTCAGAAAACCCAGTTTCAGATTTTAATCTGCAAGATGGAC
                      ____________________________________________________________
consensus GACCTCCACCGAAGCGGGATTCAGAAAACCCAGTTTCAGATTTTAATGTGCAAGATGGAC
 
. : . : . : . : . : . :
rJMSF015C02+ NTGTNGTATTATCTCCAACAAGAAAGTCAAGGAGAGTGATGCNTANTCGTGAGGGATTTG
rJMFF036D08+ -TGTTGTATTATCTCCAACAAGAAAGTCAAGGAGAGTGATGCCTACTCGTGAGGGATTTG
                      ____________________________________________________________
consensus NTGTTGTATTATCTCCAACAAGAAAGTCAAGGAGAGTGATGCCTACTCGTGAGGGATTTG
 
. : . : . : . : . : . :
rJMSF015C02+ AGGGAAATGCCACATAAGCGGATAAGAGANGTCGATGGGAANGAATTCATATGANNGAGC
rJMFF036D08+ AGGGAAATGCCACATAAGCGGATAAGAGATGTCGATGGGAATGAATTCATATGAGTGAGC
                      ____________________________________________________________
consensus AGGGAAATGCCACATAAGCGGATAAGAGATGTCGATGGGAATGAATTCATATGAGTGAGC
 
. : . : . : . : . : . :
rJMSF015C02+ AGGCTCTCCTATCATCNTATGTCCNTGGATTTCTCAGTCTNTGAGGTGGAACCATCTTAT
rJMFF036D08+ AGGCTCTCCTATCATCCTATGTCCTTGGATTTCTCAGTCTTTGAGGTGGAACCATCTTCT
                      ____________________________________________________________
consensus AGGCTCTCCTATCATCCTATGTCCTTGGATTTCTCAGTCTTTGAGGTGGAACCATCTTCT
 
. : . : . : . : . : . :
rJMSF015C02+ TGGCCAACAATNAACAG
rJMFF036D08+ AGGCCAACAATTAACAGGTAAATCATGTCGGCTCTTTTCTAGTTACTAGAGGAATAATAT
                      ____________________________________________________________
consensus TGGCCAACAATTAACAGGTAAATCATGTCGGCTCTTTTCTAGTTACTAGAGGAATAATAT
 
. : . : . : . : . : . :
rJMFF036D08+ GGACAAATAGCTATATAAATATACTGGTCAATAAACACATGCTGTTATTTATCGTGAATT
                      ____________________________________________________________
consensus GGACAAATAGCTATATAAATATACTGGTCAATAAACACATGCTGTTATTTATCGTGAATT