Contig 012372:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004M06Sequence620010141 (3)emb|CDP18453.1|2e-28unnamed protein product [Coffea canephora]756012372 (3)emb|CDP18453.1|3e-28unnamed protein product [Coffea canephora]
JMFF035H17Sequence568010141 (3)emb|CDP18453.1|4e-61unnamed protein product [Coffea canephora]710012372 (3)emb|CDP18453.1|8e-22unnamed protein product [Coffea canephora]
JMSF036L11Sequence659020052emb|CDP18453.1|5e-41unnamed protein product [Coffea canephora]740012372 (3)emb|CDP18453.1|1e-31unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF036L11+                                      AGGATAGGAGGCGATCAAGCATCCATGACATC
rJMFF004M06+                                  ANCAAGGATAGGAGGCGATCAAGCATCCATGACATC
                      ____________________________________________________________
consensus                                     ANCAAGGATAGGAGGCGATCAAGCATCCATGACATC
 
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rJMSF036L11+          ACCAATGTTAACAGCGGAGATGTTTCGGTGGGCCAAGGACCGATTACTGGACAA-ACTAA
rJMFF004M06+          ACCAATGTTAACAGCGGAGATGTTTCGGTGGGCCAAGGACCGATTACTGGACAANNCTAA
rJMFF035H17+                   AACAGCGGAGATGTTTCGGTGGGCCAAGGACCGATTACTGGACAA-ACTAA
                      ____________________________________________________________
consensus             ACCAATGTTAACAGCGGAGATGTTTCGGTGGGCCAAGGACCGATTACTGGACAA-ACTAA
 
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rJMSF036L11+          TGGAACTGCAGCAGCAGCAGCAGCAGGAGGTTCTTCTGGAAAGTCGAACAAGCCACAGGC
rJMFF004M06+          TGGAACTGCAGCAGCAGCAGCAGCAGGAGGTTCTTCTGGAAAGTCGAACAAGCCACAGGC
rJMFF035H17+          TGGAACTGCAGCAGCAGCAGCAGCAGGAGGTTCTTCTGGAAAGTCGAACAAGCCACAGGC
                      ____________________________________________________________
consensus             TGGAACTGCAGCAGCAGCAGCAGCAGGAGGTTCTTCTGGAAAGTCGAACAAGCCACAGGC
 
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rJMSF036L11+          TCCGGCTCTGGCTCCTGGAGTTGCCATGTATGGGGGGGCCACAACTATTGGACAGCCAGT
rJMFF004M06+          TCCGGCTCTGGCTCCTGGAGTTGCCATGTATGGGGGGGCCACAACTATTGGACAGCCAGT
rJMFF035H17+          TCCGGCTCTGGCTCCTGGAGTTGCCATGTATGGGGGGGCCACAACTATTGGACAGCCAGT
                      ____________________________________________________________
consensus             TCCGGCTCTGGCTCCTGGAGTTGCCATGTATGGGGGGGCCACAACTATTGGACAGCCAGT
 
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rJMSF036L11+          AGGGGTACCCCTTGTTCCTGCAGTCGGTACACCTATGAATCTCCCTCCGCAGGCTCACAT
rJMFF004M06+          AGGGGTACCCCTTGTTCCTGCAGTCGGTACACCTATGAATCTCCCTCCGCAGGCTCACAT
rJMFF035H17+          AGGGGTACCCCTTGTTCCTGCAGTCGGTACACCTATGAATCTCCCTCCGCAGGCTCACAT
                      ____________________________________________________________
consensus             AGGGGTACCCCTTGTTCCTGCAGTCGGTACACCTATGAATCTCCCTCCGCAGGCTCACAT
 
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rJMSF036L11+          GGCATACGGGACACCTTCCATTCCCGGAGCAGTGGTTCCTGGCGCTCCGGTGAACATGGC
rJMFF004M06+          GGCATACGGGACACCTTCCATTCCCGGAGCAGTGGTTCCTGGCGCTCCGGTGAACATGGC
rJMFF035H17+          GGCATACGGGACACCTTCCATTCCCGGAGCAGTGGTTCCTGGCGCTCCGGTGAACATGGC
                      ____________________________________________________________
consensus             GGCATACGGGACACCTTCCATTCCCGGAGCAGTGGTTCCTGGCGCTCCGGTGAACATGGC
 
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rJMSF036L11+          TCCAATGCCTCATACATCTGCTCATAGGTAAACTGTTTTTCCCGTCCAACAATGCACAAA
rJMFF004M06+          TCCAATGCCTCATACATCTGCTCATAGGTAAACTGTTTTTCCCGTCCAACAATGCACAAA
rJMFF035H17+          TCCAATGCCTCATACATCTGCTCATAGGTAAACTGTTTTTCCCGTCCAACAATGCACAAA
                      ____________________________________________________________
consensus             TCCAATGCCTCATACATCTGCTCATAGGTAAACTGTTTTTCCCGTCCAACAATGCACAAA
 
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rJMSF036L11+          CATAACATTTCGGGGGCAATATCCTGCTATTTTCAACATGAGCTAGCCGTTATGATGATG
rJMFF004M06+          CATAACATTTCGGGGGCAATATCCTGCTATTTTCAACATGAGCTAGCCGTTATGATGATG
rJMFF035H17+          CATAACATTTCGGGGGCAATATCCTGCTATTTTCAACATGAGCTAGCCGTTATGATGATG
                      ____________________________________________________________
consensus             CATAACATTTCGGGGGCAATATCCTGCTATTTTCAACATGAGCTAGCCGTTATGATGATG
 
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rJMSF036L11+          TCACTTAAAGACCGAGCCTTTGATCAAACTGTGGTCGTCGCCTTCCTTCCATTTTATGTG
rJMFF004M06+          TCACTTAAAGACCGAGCCTTTGATCAAACTGTGGTCGTCGCCTTCCTTCCATTTTATGTG
rJMFF035H17+          TCACTTAAAGACCGAGCCTTTGATCAAACTGTGGTCGTCGCCTTCCTTCCATTTTATGTG
                      ____________________________________________________________
consensus             TCACTTAAAGACCGAGCCTTTGATCAAACTGTGGTCGTCGCCTTCCTTCCATTTTATGTG
 
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rJMSF036L11+          TATGAAAATCGAAATAAATTGGTAAGAAAGATTGATTGATTGGTTGAATGCATGTGTATA
rJMFF004M06+          TATGAAAATCGAAATAAATTGGTAAGAAAGATTGATTGATTGGTTGAATGCATGTGTATA
rJMFF035H17+          TATGAAAATCGAAATAAATTGGTAAGAAAGATTGATTGATTGGTTGAATGCATGTGTATA
                      ____________________________________________________________
consensus             TATGAAAATCGAAATAAATTGGTAAGAAAGATTGATTGATTGGTTGAATGCATGTGTATA
 
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rJMSF036L11+          GGCAACTAGTGATATGGGAGCACTTAGTTTAGGAGAGAGCAGGGCGGATTTGGTAGTAGT
rJMFF004M06+          GGCAGCTAGTGATATGGGAGCACTTAGTTTAGGAGAGAGCAGGGCGGATTTGGTAGTAGT
rJMFF035H17+          GGCAGCTAGTGATATGGGAGCACTTAGTTTAGGAGAGAGCAGGGCGGATTTGGTAGTAGT
                      ____________________________________________________________
consensus             GGCAGCTAGTGATATGGGAGCACTTAGTTTAGGAGAGAGCAGGGCGGATTTGGTAGTAGT
 
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rJMSF036L11+          TGTTTCTATTCTAGTGGTTTAAGAGCAGAGCTATTCTCTCTTCAAAGTTAAGTTGTACAG
rJMFF004M06+          TGTTTCTATTCTAGTGGTTTAAGAGCAGAGCTATTCTCTCTTCAAAGTTAAGTTGTACAG
rJMFF035H17+          TGTTTCTATTCTAGTGGTTTAAGAGCAGAGCTATTCTCTCTTCAAAGTTAAGTTGTACAG
                      ____________________________________________________________
consensus             TGTTTCTATTCTAGTGGTTTAAGAGCAGAGCTATTCTCTCTTCAAAGTTAAGTTGTACAG
 
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rJMSF036L11+          CAAGCAAGCAAGCAACAACTTCCTCATCTCTCCTGTTAAGTGTATAGCA           
rJMFF004M06+          CAAGCAAGCAAGCAACAACTTCCTCATCTCTCCTGTTAAGTGTATAGCATATCCAAGCAC
rJMFF035H17+          CAAGCAAGCAAGCAACAACTTCCTCATCTCTCCTGTTAAGTGTATAGCATATCCAAGCAC
                      ____________________________________________________________
consensus             CAAGCAAGCAAGCAACAACTTCCTCATCTCTCCTGTTAAGTGTATAGCATATCCAAGCAC