Contig 012364:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033N17Sequence530010542 (6)ref|XP_011096567.1|9e-51PREDICTED: cullin-4-like [Sesamum indicum]718012364 (6)gb|KDO78194.1|3e-122hypothetical protein CISIN_1g003648mg [Citrus sinensis] gb|KDO78195.1| hypotheti
JMFS082B05Sequence629012364 (6)gb|KDO78194.1|9e-142hypothetical protein CISIN_1g003648mg [Citrus sinensis] gb|KDO78195.1| hypotheti
JMSF001L08Sequence348010542 (6)gb|KJB66936.1|3e-13hypothetical protein B456_010G166800 [Gossypium raimondii]767012364 (6)ref|XP_009599227.1|7e-113PREDICTED: cullin-4 [Nicotiana tomentosiformis]
JMSF009P10Sequence291010542 (6)gb|KJB66936.1|2e-18hypothetical protein B456_010G166800 [Gossypium raimondii]709012364 (6)ref|XP_002305340.2|6e-99hypothetical protein POPTR_0004s14020g [Populus trichocarpa] gb|EEE85851.2| hypo
JMSF025K20Sequence638010542 (6)ref|XP_006361548.1|4e-86PREDICTED: cullin-4-like [Solanum tuberosum]756012364 (6)gb|KDO78194.1|2e-132hypothetical protein CISIN_1g003648mg [Citrus sinensis] gb|KDO78195.1| hypotheti
JMSF034G24Sequence682010542 (6)ref|XP_006361548.1|3e-78PREDICTED: cullin-4-like [Solanum tuberosum]627012364 (6)ref|XP_009599227.1|9e-99PREDICTED: cullin-4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS082B05-                                                                  GAATC
                      ____________________________________________________________
consensus                                                                    GAATC
 
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JMFS082B05-           ATTTAAGCAATCATCCCAAGCAAGGACTAAACTCCCAATGGGAATTGAGATGAGTGTCCA
                      ____________________________________________________________
consensus             ATTTAAGCAATCATCCCAAGCAAGGACTAAACTCCCAATGGGAATTGAGATGAGTGTCCA
 
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JMFS082B05-           TGTGTTAACTACTGGGTACTGGCCAACATATCCACCCATGGATGTTCGGCTTCCTCATGA
                      ____________________________________________________________
consensus             TGTGTTAACTACTGGGTACTGGCCAACATATCCACCCATGGATGTTCGGCTTCCTCATGA
 
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JMFS082B05-           ACTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTCAGCAAATACAGTGGGAGGCG
rJMSF009P10+                                                  AGCAAATACAGTGAGAGGCG
rJMSF025K20+          ACTCAATGTGTATCAGGATATTTTCAAGGAG-TTTACCTAAGCAAATACAGTGGGAGGCG
rJMSF001L08+          ACTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTAAGCAAATACAGTGGGAGGCG
rJMFF033N17+                                                                     G
                      ____________________________________________________________
consensus             ACTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTAAGCAAATACAGTGGGAGGCG
 
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JMFS082B05-           CTTAATGTGGCAAAATTCATTGGGCCATTGTGTCCTGAAAGCAGAATTTCTCAAAGGTAA
rJMSF009P10+          CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
rJMSF034G24+                                                                    AG
rJMSF025K20+          CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
rJMSF001L08+          CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
rJMFF033N17+          CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
                      ____________________________________________________________
consensus             CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
 
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JMFS082B05-           AAAGGAGCTGGCTGTTTCCCTATTTCAGACTGTTGTTTTGATGC-TTTTCAATGATGCGG
rJMSF009P10+          GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
rJMSF034G24+          GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGCTTTTTCAATGAAGCGG
rJMSF025K20+          GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
rJMSF001L08+          GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
rJMFF033N17+          GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
                      ____________________________________________________________
consensus             GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
 
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JMFS082B05-           AAACTCTTAGCTTTCAAGATATAAAAGAGGCCACTAGCATTGAAGATAAAGAGCTAAGGA
rJMSF009P10+          AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
rJMSF034G24+          AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
rJMSF025K20+          AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
rJMSF001L08+          AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
rJMFF033N17+          AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
                      ____________________________________________________________
consensus             AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
 
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JMFS082B05-           GGACTTTGCAATCTCTTGCATGTGGGAAGGTGCGGGTTCTACAAAAGCTACCAAAAGGAA
rJMSF009P10+          GGACTTTACAATCCCTT-CATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
rJMSF034G24+          GGACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
rJMSF025K20+          GGACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
rJMSF001L08+          GGACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
rJMFF033N17+          GGACTTTACAATCCNTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
                      ____________________________________________________________
consensus             GGACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
 
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JMFS082B05-           GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAATTTACAGCTCCACTTTATC
rJMSF009P10+          GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
rJMSF034G24+          GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
rJMSF025K20+          GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
rJMSF001L08+          GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
rJMFF033N17+          GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
                      ____________________________________________________________
consensus             GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
 
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JMFS082B05-           GTATAAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACAAGTACCACTG
rJMSF009P10+          GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
rJMSF034G24+          GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
rJMSF025K20+          GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
rJMSF001L08+          GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGA-AACACGAGCACCACAG
rJMFF033N17+          GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
                      ____________________________________________________________
consensus             GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
 
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JMFS082B05-           AGAGGTTATTCCAGGACCGTCAATACCAGGTTGATGCTGCCATTGTTAGGATAATGAAGA
rJMSF009P10+          AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
rJMSF034G24+          AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
rJMSF025K20+          AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
rJMSF001L08+          AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
rJMFF033N17+          AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
                      ____________________________________________________________
consensus             AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
 
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JMFS082B05-           CCAGAAAAGT                                                  
rJMSF009P10+          CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
rJMSF034G24+          CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
rJMSF025K20+          CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
rJMSF001L08+          CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
rJMFF033N17+          CCAGAAAAGTCNTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
                      ____________________________________________________________
consensus             CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
 
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rJMSF009P10+          CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
rJMSF034G24+          CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
rJMSF025K20+          CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
rJMSF001L08+          CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
rJMFF033N17+          CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACNTGG
                      ____________________________________________________________
consensus             CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
 
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rJMSF009P10+          AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
rJMSF034G24+          AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
rJMSF025K20+          AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
rJMSF001L08+          AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
rJMFF033N17+          AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGANTAGACTAGG
                      ____________________________________________________________
consensus             AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
 
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rJMSF009P10+          CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTCAAAATGGTG
rJMSF034G24+          CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAA     
rJMSF025K20+          CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTG
rJMSF001L08+          CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTG
rJMFF033N17+          CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTG
                      ____________________________________________________________
consensus             CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTG
 
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rJMSF009P10+          TACCAGTTAC                                                  
rJMSF025K20+          TACCAGTTACTTGTTTTAATGAGCTGAC                                
rJMSF001L08+          TANCAGTTACTTGTTTTAATGAGCTGACAACTGTGTAAATCACAT               
rJMFF033N17+          TA-CAGTTACTTGTTTTAATGAGCTGACAACTGTGTAAATCACATTTCTGATTATTAAGT
                      ____________________________________________________________
consensus             TACCAGTTACTTGTTTTAATGAGCTGACAACTGTGTAAATCACATTTCTGATTATTAAGT