Contig 012364:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033N17Sequence530010542 (6)ref|XP_011096567.1|9e-51PREDICTED: cullin-4-like [Sesamum indicum]718012364 (6)gb|KDO78194.1|3e-122hypothetical protein CISIN_1g003648mg [Citrus sinensis] gb|KDO78195.1| hypotheti
JMFS082B05Sequence629012364 (6)gb|KDO78194.1|9e-142hypothetical protein CISIN_1g003648mg [Citrus sinensis] gb|KDO78195.1| hypotheti
JMSF001L08Sequence348010542 (6)gb|KJB66936.1|3e-13hypothetical protein B456_010G166800 [Gossypium raimondii]767012364 (6)ref|XP_009599227.1|7e-113PREDICTED: cullin-4 [Nicotiana tomentosiformis]
JMSF009P10Sequence291010542 (6)gb|KJB66936.1|2e-18hypothetical protein B456_010G166800 [Gossypium raimondii]709012364 (6)ref|XP_002305340.2|6e-99hypothetical protein POPTR_0004s14020g [Populus trichocarpa] gb|EEE85851.2| hypo
JMSF025K20Sequence638010542 (6)ref|XP_006361548.1|4e-86PREDICTED: cullin-4-like [Solanum tuberosum]756012364 (6)gb|KDO78194.1|2e-132hypothetical protein CISIN_1g003648mg [Citrus sinensis] gb|KDO78195.1| hypotheti
JMSF034G24Sequence682010542 (6)ref|XP_006361548.1|3e-78PREDICTED: cullin-4-like [Solanum tuberosum]627012364 (6)ref|XP_009599227.1|9e-99PREDICTED: cullin-4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS082B05- GAATC
                      ____________________________________________________________
consensus GAATC
 
. : . : . : . : . : . :
JMFS082B05- ATTTAAGCAATCATCCCAAGCAAGGACTAAACTCCCAATGGGAATTGAGATGAGTGTCCA
                      ____________________________________________________________
consensus ATTTAAGCAATCATCCCAAGCAAGGACTAAACTCCCAATGGGAATTGAGATGAGTGTCCA
 
. : . : . : . : . : . :
JMFS082B05- TGTGTTAACTACTGGGTACTGGCCAACATATCCACCCATGGATGTTCGGCTTCCTCATGA
                      ____________________________________________________________
consensus TGTGTTAACTACTGGGTACTGGCCAACATATCCACCCATGGATGTTCGGCTTCCTCATGA
 
. : . : . : . : . : . :
JMFS082B05- ACTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTCAGCAAATACAGTGGGAGGCG
rJMSF009P10+ AGCAAATACAGTGAGAGGCG
rJMSF025K20+ ACTCAATGTGTATCAGGATATTTTCAAGGAG-TTTACCTAAGCAAATACAGTGGGAGGCG
rJMSF001L08+ ACTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTAAGCAAATACAGTGGGAGGCG
rJMFF033N17+ G
                      ____________________________________________________________
consensus ACTCAATGTGTATCAGGATATTTTCAAGGAGTTTTACCTAAGCAAATACAGTGGGAGGCG
 
. : . : . : . : . : . :
JMFS082B05- CTTAATGTGGCAAAATTCATTGGGCCATTGTGTCCTGAAAGCAGAATTTCTCAAAGGTAA
rJMSF009P10+ CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
rJMSF034G24+ AG
rJMSF025K20+ CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
rJMSF001L08+ CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
rJMFF033N17+ CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
                      ____________________________________________________________
consensus CTTGATGTGGCAAAATTCATTGGGTCATTGTGTACTGAAAGCAGAATTTCCAAAAGGCAG
 
. : . : . : . : . : . :
JMFS082B05- AAAGGAGCTGGCTGTTTCCCTATTTCAGACTGTTGTTTTGATGC-TTTTCAATGATGCGG
rJMSF009P10+ GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
rJMSF034G24+ GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGCTTTTTCAATGAAGCGG
rJMSF025K20+ GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
rJMSF001L08+ GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
rJMFF033N17+ GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
                      ____________________________________________________________
consensus GAAGGAGCTGGCTGTTTCCTTCTTTCAGACCGTTGTTCTGATGC-TTTTCAATGAAGCGG
 
. : . : . : . : . : . :
JMFS082B05- AAACTCTTAGCTTTCAAGATATAAAAGAGGCCACTAGCATTGAAGATAAAGAGCTAAGGA
rJMSF009P10+ AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
rJMSF034G24+ AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
rJMSF025K20+ AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
rJMSF001L08+ AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
rJMFF033N17+ AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
                      ____________________________________________________________
consensus AAAAGTTCAGCTTTCAAGATATCAAAGAAGCAATTGGTATTGAGGATAAAGAACTAAGGA
 
. : . : . : . : . : . :
JMFS082B05- GGACTTTGCAATCTCTTGCATGTGGGAAGGTGCGGGTTCTACAAAAGCTACCAAAAGGAA
rJMSF009P10+ GGACTTTACAATCCCTT-CATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
rJMSF034G24+ GGACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
rJMSF025K20+ GGACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
rJMSF001L08+ GGACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
rJMFF033N17+ GGACTTTACAATCCNTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
                      ____________________________________________________________
consensus GGACTTTACAATCCCTTGCATGTGGGAAAGTGCGGGTCCTCCAGAAGATACCAAAAGGAA
 
. : . : . : . : . : . :
JMFS082B05- GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAATTTACAGCTCCACTTTATC
rJMSF009P10+ GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
rJMSF034G24+ GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
rJMSF025K20+ GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
rJMSF001L08+ GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
rJMFF033N17+ GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
                      ____________________________________________________________
consensus GAGATGTGGAGGATGATGATACCTTTGTGTTCAATGATCAGTTCACTGCTCCACTTTATC
 
. : . : . : . : . : . :
JMFS082B05- GTATAAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACAAGTACCACTG
rJMSF009P10+ GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
rJMSF034G24+ GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
rJMSF025K20+ GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
rJMSF001L08+ GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGA-AACACGAGCACCACAG
rJMFF033N17+ GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
                      ____________________________________________________________
consensus GAATTAAGGTAAATGCCATCCAGATGAAAGAAACAGTTGAGGAGAACACGAGCACCACAG
 
. : . : . : . : . : . :
JMFS082B05- AGAGGTTATTCCAGGACCGTCAATACCAGGTTGATGCTGCCATTGTTAGGATAATGAAGA
rJMSF009P10+ AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
rJMSF034G24+ AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
rJMSF025K20+ AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
rJMSF001L08+ AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
rJMFF033N17+ AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
                      ____________________________________________________________
consensus AAAGAGTATTCCAGGACCGGCAATACCAGGTTGATGCTGCAATTGTTAGGATAATGAAAA
 
. : . : . : . : . : . :
JMFS082B05- CCAGAAAAGT
rJMSF009P10+ CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
rJMSF034G24+ CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
rJMSF025K20+ CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
rJMSF001L08+ CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
rJMFF033N17+ CCAGAAAAGTCNTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
                      ____________________________________________________________
consensus CCAGAAAAGTCCTAAGCCACACTCTCTTGATAGCTGAACTCTTTCAGCAGCTAAAATTTC
 
. : . : . : . : . : . :
rJMSF009P10+ CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
rJMSF034G24+ CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
rJMSF025K20+ CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
rJMSF001L08+ CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
rJMFF033N17+ CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACNTGG
                      ____________________________________________________________
consensus CAATAAAGCCGGCTGACTTGAAGAAGAGGATCGAAAGCTTGATAGACAGGGAGTACCTGG
 
. : . : . : . : . : . :
rJMSF009P10+ AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
rJMSF034G24+ AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
rJMSF025K20+ AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
rJMSF001L08+ AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
rJMFF033N17+ AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGANTAGACTAGG
                      ____________________________________________________________
consensus AGCGGGACAAAAGTAATCCTCAGATATACAATTACCTTGCCTAGACTAGACTAGACTAGG
 
. : . : . : . : . : . :
rJMSF009P10+ CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTCAAAATGGTG
rJMSF034G24+ CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAA
rJMSF025K20+ CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTG
rJMSF001L08+ CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTG
rJMFF033N17+ CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTG
                      ____________________________________________________________
consensus CTTTTCTTAAGAGATTTTTCAATGCTGAGAGGTGGGCTAACATTCCCACTC-AAATGGTG
 
. : . : . : . : . : . :
rJMSF009P10+ TACCAGTTAC
rJMSF025K20+ TACCAGTTACTTGTTTTAATGAGCTGAC
rJMSF001L08+ TANCAGTTACTTGTTTTAATGAGCTGACAACTGTGTAAATCACAT
rJMFF033N17+ TA-CAGTTACTTGTTTTAATGAGCTGACAACTGTGTAAATCACATTTCTGATTATTAAGT
                      ____________________________________________________________
consensus TACCAGTTACTTGTTTTAATGAGCTGACAACTGTGTAAATCACATTTCTGATTATTAAGT