Contig 012363:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007D23Sequence569012363 (6)gb|ABB02409.1|2e-78chloroplast lipocalin [Ipomoea nil]701012363 (6)gb|ABB02409.1|1e-115chloroplast lipocalin [Ipomoea nil]
JMFF032E02Sequence502012363 (6)gb|ABB02409.1|3e-56chloroplast lipocalin [Ipomoea nil]663012363 (6)gb|ABB02409.1|3e-127chloroplast lipocalin [Ipomoea nil]
JMFF033N04Sequence487012363 (6)gb|ABB02409.1|8e-55chloroplast lipocalin [Ipomoea nil]745012363 (6)gb|ABB02409.1|3e-128chloroplast lipocalin [Ipomoea nil]

Alignment

This contig is upended


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JMFF033N04-                                                 GAAGTTACCACTATATCATTCT
JMFF032E02-                                   GCTTGAACTGTGATGAAGATACCACTATATCATTCT
JMFF007D23-                                                 GAAGTTACCACTATATCATTCT
                      ____________________________________________________________
consensus                                     GCTTGAACTGTGATGAAGTTACCACTATATCATTCT
 
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JMFF033N04-           ACTGAATTTTACACATATAAACCCCAAATTTCCCCGGAGACTGGGAAGAGCAAAAATGGC
JMFF032E02-           ACTGAATTTTACACATATAAACCCCAAATTTCCCCGGAGACTGGGAAGAGCAAAAATGGC
JMFF007D23-           ACTGAATTTTACACATATAAACCCCAAATTTCCCCGGAGACTGGGAAGAGCAAAAATGGC
                      ____________________________________________________________
consensus             ACTGAATTTTACACATATAAACCCCAAATTTCCCCGGAGACTGGGAAGAGCAAAAATGGC
 
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JMFF033N04-           GTCTCACAATCTGTTTGTGGCACAATCATCCCCAGTGCTGCTTCCTTCTCATCATCCATC
JMFF032E02-           GTCTCACAATCTGTTTGTGGCACAATCATCCCCAGTGCTGCTTCCTTCTCATCATCCATC
JMFF007D23-           GTCTCACAATCTGTTTGTGGCACAATCATCCCCAGTGCTGCTTCCTTCTCATCATCCATC
                      ____________________________________________________________
consensus             GTCTCACAATCTGTTTGTGGCACAATCATCCCCAGTGCTGCTTCCTTCTCATCATCCATC
 
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JMFF033N04-           CAAACCCAGAGGAGTTTCCGGGAAAATGATTGTGAGGTGCACTTTGGAGCAAACTGCACC
JMFF032E02-           CAAACCCAGAGGAGTTTCCGGGAAAATGATTGTGAGGTGCACTTTGGAGCAAACTGCACC
JMFF007D23-           CAAACCCAGAGGAGTTTCCGGGAAAATGATTGTGAGGTGCACTTTGGAGCAAACTGCACC
                      ____________________________________________________________
consensus             CAAACCCAGAGGAGTTTCCGGGAAAATGATTGTGAGGTGCACTTTGGAGCAAACTGCACC
 
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JMFF033N04-           GAGTAAGGCTAGGGCTAAACATCTAGTATCAGGTCTTGCAGCATCAATAGTATTTCTCAC
JMFF032E02-           GAGTAAGGCTAGGGCTAAACATCTAGTATCAGGTCTTGCAGCATCAATAGTATTTCTCAC
JMFF007D23-           GAGTAAGGCTAGGGCTAAACATCTAGTATCAGGTCTTGCAGCATCAATAGTATTTCTCAC
                      ____________________________________________________________
consensus             GAGTAAGGCTAGGGCTAAACATCTAGTATCAGGTCTTGCAGCATCAATAGTATTTCTCAC
 
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JMFF033N04-           TCAAGTTAACTCGGTGGTCGCAGCAGATCTTTCTTATCAGAATAACATTTGCCAACTCGC
JMFF032E02-           TCAAGTTAACTCGGTGGTCGCAGCAGATCTTTCTTATCAGAATAACATTTGCCAACTCGC
JMFF007D23-           TCAAGTTAACTCGGTGGTCGCAGCAGATCTTTCTTATCAGAATAACATTTGCCAACTCGC
                      ____________________________________________________________
consensus             TCAAGTTAACTCGGTGGTCGCAGCAGATCTTTCTTATCAGAATAACATTTGCCAACTCGC
 
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JMFF033N04-           AAGTGCTGCAGACAACCTGCCAAGTCTTCCTTTGGACGGAGGGGATGACAATGGTGGAAT
JMFF032E02-           AAGTGCTGCAGACAACCTGCCAAGTCTTCCTTTGGACGGAGGGGATGACAATGGTGGAAT
JMFF007D23-           AAGTGCTGCAGACAACCTGCCAAGTCTTCCTTTGGACGGAGGGGATGACAATGGTGGAAT
                      ____________________________________________________________
consensus             AAGTGCTGCAGACAACCTGCCAAGTCTTCCTTTGGACGGAGGGGATGACAATGGTGGAAT
 
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JMFF033N04-           GCTGATGATGATGAGAGGTATGACTGCGAAGAACTTCGACCCGACTAGATATGCTGGAAG
JMFF032E02-           GCTGATGATGATGAGAGGTATGACTGCGAAGAACTTCGACCCGACTAGATATGCTGGAAG
JMFF007D23-           GCTGATGATGATGAGAGGTATGACTGCGAAGAACTTCGACCCGACTAGATATGCTGGAAG
                      ____________________________________________________________
consensus             GCTGATGATGATGAGAGGTATGACTGCGAAGAACTTCGACCCGACTAGATATGCTGGAAG
 
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JMFF033N04-           ATGGTTTGAAGTAGCTTCACTTAAACGCGGGTTTGCTGGACAAGG               
JMFF032E02-           ATGGTTTGAAGTAGCTTCACTTAAACGCGGGTTTGCTGGACAAGG               
JMFF007D23-           ATGGTTTGAAGTAGCTTCACTTAAACGCGGGTTTGCTGGACAAGGTCAGGAAGATTGCCA
rJMFF032E02+                                                     GGTCAGGAAGATTGCCA
rJMFF033N04+                                                     GGTCAGGAAGATTGCCA
                      ____________________________________________________________
consensus             ATGGTTTGAAGTAGCTTCACTTAAACGCGGGTTTGCTGGACAAGGTCAGGAAGATTGCCA
 
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JMFF007D23-           CTGTACCCAGGGGATTTATACATTTGATGTAAATGCAGCTGCTATACAAGTTGATACCTT
rJMFF032E02+          CTGTACCCAGGGGATTTATACATTTGATGTAAATGCAGCTGCTATACAAGTTGATACCTT
rJMFF007D23+                            TACATTTGATGTAAATGCAGCTGCTATACAAGTTGATACCTT
rJMFF033N04+          CTGTACCCAGGGGATTTATACATTTGATGTAAATGCAGCTGCTATACAAGTTGATACCTT
                      ____________________________________________________________
consensus             CTGTACCCAGGGGATTTATACATTTGATGTAAATGCAGCTGCTATACAAGTTGATACCTT
 
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JMFF007D23-           CTGTGTT                                                     
rJMFF032E02+          CTGTGTTCATGGTGGACCTGATGGCTATATTACTGGGATAAGAGGGAAAGTTCAATGCCT
rJMFF007D23+          CTGTGTTCATGGTGGACCTGATGGCTATATTACTGGGATAAGAGGGAAAGTTCAATGCCT
rJMFF033N04+          CTGTGTTCATGGTGGACCTGATGGCTATATTACTGGGATAAGAGGGAAAGTTCAATGCCT
                      ____________________________________________________________
consensus             CTGTGTTCATGGTGGACCTGATGGCTATATTACTGGGATAAGAGGGAAAGTTCAATGCCT
 
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rJMFF032E02+          TTCTGAGGACGAGACACTAAAAACCGCGACTGATCTTGAAAAGCAAGAGATGATAAAGGG
rJMFF007D23+          TTCTGAGGACGAGACACTAAAAACCGCGACTGATCTTGAAAAGCAAGAGATGATAAAGGG
rJMFF033N04+          TTCTGAGGACGAGACACTAAAAACCGCGACTGATCTTGAAAAGCAAGAGATGATAAAGGG
                      ____________________________________________________________
consensus             TTCTGAGGACGAGACACTAAAAACCGCGACTGATCTTGAAAAGCAAGAGATGATAAAGGG
 
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rJMFF032E02+          AAAGTGTTATCTCCGGTTTCCCACGCTCCCGTTTATCCCCAAGGAGCCTTATGATGTGAT
rJMFF007D23+          AAAGTGTTATCTCCGGTTTCCCACGCTCCCGTTTATCCCCAAGGAGCCTTATGATGTGAT
rJMFF033N04+          AAAGTGTTATCTCCGGTTTCCCACGCTCCCGTTTATCCCCAAGGAGCCTTATGATGTGAT
                      ____________________________________________________________
consensus             AAAGTGTTATCTCCGGTTTCCCACGCTCCCGTTTATCCCCAAGGAGCCTTATGATGTGAT
 
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rJMFF032E02+          TGCAACCGATTATGACAATTTCGCCATAGTTTCAGGAGCTAAAGACAAGAGCTTTGTTCA
rJMFF007D23+          TGCAACCGATTATGACAATTTCGCCATAGTTTCAGGAGCTAAAGACAAGAGCTTTGTTCA
rJMFF033N04+          TGCAACCGATTATGACAATTTCGCCATAGTTTCAGGAGCTAAAGACAAGAGCTTTGTTCA
                      ____________________________________________________________
consensus             TGCAACCGATTATGACAATTTCGCCATAGTTTCAGGAGCTAAAGACAAGAGCTTTGTTCA
 
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rJMFF032E02+          GATTTATTCGAGGACACCTGATCCAGGACCCGAGTTCATTGAGAAGTACAAAGCTTACTT
rJMFF007D23+          GATTTATTCGAGGACACCTGATCCAGGACCCGAGTTCATTGAGAAGTACAAAGCTTACTT
rJMFF033N04+          GATTTATTCGAGGACACCTGATCCAGGACCCGAGTTCATTGAGAAGTACAAAGCTTACTT
                      ____________________________________________________________
consensus             GATTTATTCGAGGACACCTGATCCAGGACCCGAGTTCATTGAGAAGTACAAAGCTTACTT
 
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rJMFF032E02+          AGCGGATTTTGGATATGATCCGAGCAAAATCAAGGATACTCCACAGGATTGTGAGGTAAT
rJMFF007D23+          AGCGGATTTTGGATATGATCCGAGCAAAATCAAGGATACTCCACAGGATTGTGAGGTAAT
rJMFF033N04+          AGCGGATTTTGGATATGATCCGAGCAAAATCAAGGATACTCCACAGGATTGTGAGGTAAT
                      ____________________________________________________________
consensus             AGCGGATTTTGGATATGATCCGAGCAAAATCAAGGATACTCCACAGGATTGTGAGGTAAT
 
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rJMFF032E02+          GTCTAATAGTCAGCTTTCAGCAATGATGTCCATGGCCGGGATGCAACAAGCTCTAAACAA
rJMFF007D23+          GTCTAATAGTCAGCTTTCAGCAATGATGTCCATGGCCGGGATGCAACAAGCTCTAAACAA
rJMFF033N04+          GTCTAATAGTCAGCTTTCAGCAATGATGTCCATGGCCGGGATGCAACAAGCTCTAAACAA
                      ____________________________________________________________
consensus             GTCTAATAGTCAGCTTTCAGCAATGATGTCCATGGCCGGGATGCAACAAGCTCTAAACAA
 
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rJMFF032E02+          CCAATTTCCCGAGCTAGAGTTGAAGGCCCCTGTTGCATTCAACCCATTTACGAGTGTGTT
rJMFF007D23+          CCAATTTCCCGAGCTAGAGTTGAAGGCCCCTGTTGCATTCAACCCATTTACGAGTGTGTT
rJMFF033N04+          CCAATTTCCCGAGCTAGAGTTGAAGGCCCCTGTTGCATTCAACCCATTTACGAGTGTGTT
                      ____________________________________________________________
consensus             CCAATTTCCCGAGCTAGAGTTGAAGGCCCCTGTTGCATTCAACCCATTTACGAGTGTGTT
 
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rJMFF032E02+          TGACACTCTGAAGAAGCTTGTTGAGCTTTATTTCAAGTAGTAAACTTTATCGTTTCTCTT
rJMFF007D23+          TGACACTCTGAAGAAGCTTGTTGAGCTTTATTTCAAGTAGTAAACTTTATCGTTTCTCTT
rJMFF033N04+          TGACACTCTGAAGAAGCTTGTTGAGCTTTATTTCAAGTAGTAAACTTTATCGTTTCTCTT
                      ____________________________________________________________
consensus             TGACACTCTGAAGAAGCTTGTTGAGCTTTATTTCAAGTAGTAAACTTTATCGTTTCTCTT
 
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rJMFF032E02+          TGTACTAAGCTTCCCTCTGTAATCGATTTCTCTT                          
rJMFF007D23+          TGTACTAAGCTTCCCTCTGTAATCGATTTCTCTTCAATGTTAAAATGTATAGCCATGATT
rJMFF033N04+          TGTACTAAGCTTCCCTCTGTAATCGATTTCTCTTCAATGTTAAAATGTATAGCCATGATT
                      ____________________________________________________________
consensus             TGTACTAAGCTTCCCTCTGTAATCGATTTCTCTTCAATGTTAAAATGTATAGCCATGATT
 
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rJMFF007D23+          CATATTTACTCCCTGTTACAAACAGGAGCATATGGGCCAAACAACAGATGAAT       
rJMFF033N04+          CATATTTACTCCCTGTTACAAACAGGAGCATATGGGCCAAACAACAGATGAATCAACCAA
                      ____________________________________________________________
consensus             CATATTTACTCCCTGTTACAAACAGGAGCATATGGGCCAAACAACAGATGAATCAACCAA