Contig 012362:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033J13Sequence562012362 (2)ref|XP_002321926.1|4e-69hypothetical protein POPTR_0015s12900g [Populus trichocarpa] gb|EEF06053.1| hypo767012362 (2)emb|CDP05175.1|3e-99unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF033J13-               AAAAGCTTAGCTTCCAATTTTCTCGAAGAAAACGAAAAAAGGGATAGCAAACTAAC
                      ____________________________________________________________
consensus                 AAAAGCTTAGCTTCCAATTTTCTCGAAGAAAACGAAAAAAGGGATAGCAAACTAAC
 
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JMFF033J13-           ATGTCGGGTGGAATCGGGCCATGCAGTGACATACATCTCCAGAAGGAGAAGGAGGAGCAG
rJMFF033J13+                       TCGGGCCATGCAGTGACATACATNTCCAGAAGGAGAAGGAGGAGCAG
                      ____________________________________________________________
consensus             ATGTCGGGTGGAATCGGGCCATGCAGTGACATACATCTCCAGAAGGAGAAGGAGGAGCAG
 
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JMFF033J13-           ACGGCGGCGGTGACGGAAGTAGCAGGGAAGCCGGCGCGGCGGGGATTTTTGAGCTTACGG
rJMFF033J13+          ACGGCGGCGGTGACGGAAGTAGCAGGGAAGCCGGCGCGGCGGGGATTTTTGAGCTTACGG
                      ____________________________________________________________
consensus             ACGGCGGCGGTGACGGAAGTAGCAGGGAAGCCGGCGCGGCGGGGATTTTTGAGCTTACGG
 
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JMFF033J13-           CAGCTGAACGTGTTGGCGGTGATGATGGTGCTGTCGGCCAGCGGCATGGTGAGCATGGAA
rJMFF033J13+          CAGCTGAACGTGTTGGCGGTGATGATGGTGCTGTCGGCCAGCGGCATGGTGAGCATGGAA
                      ____________________________________________________________
consensus             CAGCTGAACGTGTTGGCGGTGATGATGGTGCTGTCGGCCAGCGGCATGGTGAGCATGGAA
 
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JMFF033J13-           GATTTGGGGTTTGTGGTGTTCTCAGTCATCTACTTGTATTTCATCTCCAAGGCGGCGTTT
rJMFF033J13+          GATTTGGGGTTTGTGGTGTTCTCAATCATCTACTTGTATTTCATCTCCAAGGCGGCGTTT
                      ____________________________________________________________
consensus             GATTTGGGGTTTGTGGTGTTCTCAGTCATCTACTTGTATTTCATCTCCAAGGCGGCGTTT
 
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JMFF033J13-           CCGCAGACCACTCCGCCGTGGACTGGTTCCGTGTTTGGCCAAAATAACCGGACCCTCCGC
rJMFF033J13+          CCGCAGACCACTCCGCCGTGGACTGGTTCCGTGTTTGGCCAAAATAACCGGACCCTCCGC
                      ____________________________________________________________
consensus             CCGCAGACCACTCCGCCGTGGACTGGTTCCGTGTTTGGCCAAAATAACCGGACCCTCCGC
 
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JMFF033J13-           CTCTATATGTTGACTTCGGCGGTCATCGGCTTGCTTCTCCCCGTAGCCTATATTTTTGAA
rJMFF033J13+          CTCTATATGTTGACTTCGGCGGTCATCGGCTTGCTTCTCCCCGTAGCCTATATTTTTGAA
                      ____________________________________________________________
consensus             CTCTATATGTTGACTTCGGCGGTCATCGGCTTGCTTCTCCCCGTAGCCTATATTTTTGAA
 
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JMFF033J13-           GGTATTGTTGAAGGGGACAAGGAGGGCATTAAGGCAGCAGTTCCGCACTTGTTTCTATTG
rJMFF033J13+          GGTATTGTTGAAGGGGACAAGGAGGGCATTAAGGCAGCAGTTCCGCACTTGTTTCTATTG
                      ____________________________________________________________
consensus             GGTATTGTTGAAGGGGACAAGGAGGGCATTAAGGCAGCAGTTCCGCACTTGTTTCTATTG
 
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JMFF033J13-           GGCAGCCAGGTGTTCATGGAAGGGGTGGCGTCCACAGAGCGGTTCTCATTGCCGGTCCGG
rJMFF033J13+          GGCAGCCAGGTGTTCATGGAAGGGGTGGCGTCCACAGAGCGGTTCTCATTGCCGGTCCGG
                      ____________________________________________________________
consensus             GGCAGCCAGGTGTTCATGGAAGGGGTGGCGTCCACAGAGCGGTTCTCATTGCCGGTCCGG
 
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JMFF033J13-           GTTTTCGTGCCGGTTTTCTACAACGC                                  
rJMFF033J13+          GTTTTCGTGCCGGTTTTCTACAACGCCAAGAGGATTTTCACCCTGGCTGAGTGGCTGAGA
                      ____________________________________________________________
consensus             GTTTTCGTGCCGGTTTTCTACAACGCCAAGAGGATTTTCACCCTGGCTGAGTGGCTGAGA
 
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rJMFF033J13+          AGTGAGATATCCAAGGAGAGTAGTGGGCGGAGGTTGTACGTTGGGAGAGGTCTGGCGGTT
                      ____________________________________________________________
consensus             AGTGAGATATCCAAGGAGAGTAGTGGGCGGAGGTTGTACGTTGGGAGAGGTCTGGCGGTT
 
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rJMFF033J13+          GCCAATATGGCGTTTTGGTGCTTTAACTTGTTTGGGTTCTTGGTGCCGGTTTACCTCCCT
                      ____________________________________________________________
consensus             GCCAATATGGCGTTTTGGTGCTTTAACTTGTTTGGGTTCTTGGTGCCGGTTTACCTCCCT
 
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rJMFF033J13+          AAGGCCTTCAAGATTTACTATTCCAACCACAAGCATAATAATTAAGGACTAATTATATTA
                      ____________________________________________________________
consensus             AAGGCCTTCAAGATTTACTATTCCAACCACAAGCATAATAATTAAGGACTAATTATATTA
 
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rJMFF033J13+          TTATTACTAGTTGTCACTCATTTGTTTTATCCTAACCAATGTTATTTTGTTCTGTTTTTT
                      ____________________________________________________________
consensus             TTATTACTAGTTGTCACTCATTTGTTTTATCCTAACCAATGTTATTTTGTTCTGTTTTTT