Contig 012359:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008A14Sequence674012359 (3)emb|CDP04202.1|2e-59unnamed protein product [Coffea canephora]
JMFF033F20Sequence576000188 (3)emb|CDP09591.1|1e-29unnamed protein product [Coffea canephora]779012359 (3)emb|CDP04202.1|1e-68unnamed protein product [Coffea canephora]
JMSF051N17Sequence640000188 (3)emb|CDP09591.1|1e-49unnamed protein product [Coffea canephora]739012359 (3)emb|CDP19014.1|7e-94unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF051N17+                                                                    TC
                      ____________________________________________________________
consensus                                                                       TC
 
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rJMSF051N17+          GGACCGATGCTCGCACNTCAGAAGGAGCACGCAGGGAAGGAAGAAATCATCGACTGGCTC
                      ____________________________________________________________
consensus             GGACCGATGCTCGCACNTCAGAAGGAGCACGCAGGGAAGGAAGAAATCATCGACTGGCTC
 
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rJMSF051N17+          TCGGAGCAGCCGCCGTCGTCCGTGGTGTTCCTCTGCTTCGGAAGCCAGGGAGGGTTCGAG
rJMFF033F20+           CGGAGCAGCCGCCGTCGTCGGTGGTGTTCCTCTGCTTCGGAAGCCAGGGAGGGTTCGAG
                      ____________________________________________________________
consensus             TCGGAGCAGCCGCCGTCGTCGGTGGTGTTCCTCTGCTTCGGAAGCCAGGGAGGGTTCGAG
 
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rJMSF051N17+          GCGCCGCAAATACACCAGGTCGCGACGGCGCTGGAGAGGAGCGGTCACAGGTTCCTGTGG
rJMFF008A14+                       ACCAGATCGCGACGGCGCTAGAGAGGAGCGGCCACAGATTCCTGTGG
rJMFF033F20+          GCGCCGCAAATACACCAGATCGCGACGGCGCTAGAGAGGAGCGGCCACAGATTCCTGTGG
                      ____________________________________________________________
consensus             GCGCCGCAAATACACCAGATCGCGACGGCGCTAGAGAGGAGCGGCCACAGATTCCTGTGG
 
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rJMSF051N17+          TCGGTCCGCCGGCCGTGGTCCTTAACCAGCTCCGAGCGAGCCAGCGACTTCACCAGTTTC
rJMFF008A14+          TCGATCCGCCGGCCGTGGTCCTTAACCAGCTCCGAGCGAGCCAGCGACTTCACCAGTTTC
rJMFF033F20+          TCGATCCGCCGGCCGTGGTCCTTAACCAGCTCCGAGCGAGCCAGCGACTTCACCAGTTTC
                      ____________________________________________________________
consensus             TCGATCCGCCGGCCGTGGTCCTTAACCAGCTCCGAGCGAGCCAGCGACTTCACCAGTTTC
 
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rJMSF051N17+          GACCAGATTTTGCCGGCGGGATTCCTTGAAAGGACCAAAATTAGGGGGAAGGTTTGCGGG
rJMFF008A14+          GACCCGATTTTGCCGGCGGGATTCGCGGAGAGGACGAGAAACAGGGGGAAAGTTTGCGGG
rJMFF033F20+          GACCCGATTTTGCCGGCGGGATTCGCGGAGAGGACGAGAAACAGGGGGAAAGTTTGCGGG
                      ____________________________________________________________
consensus             GACCCGATTTTGCCGGCGGGATTCGCGGAGAGGACGAGAAACAGGGGGAAAGTTTGCGGG
 
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rJMSF051N17+          TGGGCCCCGCAAGTGGAAGTTCTGGCCCACTCCG-CCACGGCGGCGTTTGTGTCCCACTG
rJMFF008A14+          TGGGCCCCGCAAGTGGAAGTTCTGGCCCACCCCGCCCACGGCGGCTTTCGTGTCCCACTG
rJMFF033F20+          TGGGCCCCGCAAGTGGAAGTTCTGGCCCACCCCGCCCCACGGCGCTTTCGTGTCCCACTG
                      ____________________________________________________________
consensus             TGGGCCCCGCAAGTGGAAGTTCTGGCCCACCCCGCCCACGGCGGCTTTCGTGTCCCACTG
 
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rJMSF051N17+          CGGCTGGAACTCCACTCTGGAGAGTATATGGCACGGCGTTCCGATGGTGACGTGGCCCAT
rJMFF008A14+          TGGCTGGAACTCCACTCTGGAGAGCATGTGGCACGGTGTTCCGATGGTGACGTGGCCCAT
rJMFF033F20+          TGGCTGGAACTCCACTCTGGAGAGCATGTGGCACGGTGTTCCGATGGTGACGTGGCCCAT
                      ____________________________________________________________
consensus             TGGCTGGAACTCCACTCTGGAGAGCATGTGGCACGGTGTTCCGATGGTGACGTGGCCCAT
 
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rJMSF051N17+          CTACGCCGAGCAGCAGACGAACGCGTTTCAGTTGGTGAAGGAGCTCGGGCTGGCGGTGGA
rJMFF008A14+          CTACGCCGAGCAGCAGACCAACGCGTTTCAGTTGGTGAAGGAGCTCGGGCTGGCGGTGGA
rJMFF033F20+          CTACGCCGAGCAGCAGACCAACGCGTTTCAGTTGGTGAAGGAGCTCGGGCTGGCGGTGGA
                      ____________________________________________________________
consensus             CTACGCCGAGCAGCAGACCAACGCGTTTCAGTTGGTGAAGGAGCTCGGGCTGGCGGTGGA
 
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rJMSF051N17+          GCTGACGGTGGATTATCGAAGGGCGCAAGGCTCAGAGAATGTTGTAATGGCGGAGCAGAT
rJMFF008A14+          GCTGACGGTGGATTATCGAAGGGCGCAAGGCTCAGAGAATGTTGTAATGGCGGAGCAGAT
rJMFF033F20+          GCTGACGGTGGATTATCGAAGGGCGCAAGGCTCAGAGAATGTTGTAATGGCGGAGCAGAT
                      ____________________________________________________________
consensus             GCTGACGGTGGATTATCGAAGGGCGCAAGGCTCAGAGAATGTTGTAATGGCGGAGCAGAT
 
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rJMSF051N17+          AGAGAAAGCGATAGAGAGCGTGATGGAGGCAGAAAATCCGGTGAGAAAAAGAGCTAAAGA
rJMFF008A14+          AGAGAAAGCGATAGAGAGCGTGATGGAGGCAGAAAATCCGGTGAGAAAAAGAGGTAAAGA
rJMFF033F20+          AGAGAAAGCGATAGAGAGCGTGATGGAGGCAGAAAATCCGGTGAGAAAAAGAGGTAAAGA
                      ____________________________________________________________
consensus             AGAGAAAGCGATAGAGAGCGTGATGGAGGCAGAAAATCCGGTGAGAAAAAGAGGTAAAGA
 
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rJMSF051N17+          GATGGGAGAGAAGAGCCGGGAGGCGTTGAAGGAAGGTGGATCTTCCTTCATCTCTTTACA
rJMFF008A14+          GATGGGAGAGATGAGCCGGAAGGCGTTGAAGGAAGGTGGATCTTCCTTCATCTCGTTGCG
rJMFF033F20+          GATGGGAGAGATGAGCCGGAAGGCGTTGAAGGAAGGTGGATCTTCCTTCATCTCGTTGCG
                      ____________________________________________________________
consensus             GATGGGAGAGATGAGCCGGAAGGCGTTGAAGGAAGGTGGATCTTCCTTCATCTCGTTGCG
 
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rJMSF051N17+          GCGTTTGATTCACGACATAATTCATAACATTAAACTATGCTAA                 
rJMFF008A14+          GCGTTTGATTGACGACATAATTCATAACAGTAAACTATGCTAATTAAAGCTTAGAGCCAA
rJMFF033F20+          GCGTTTGATTGACGACATAATTCATAACAGTAAACTATGCTAATTAAAGCTTAGAGCCAA
                      ____________________________________________________________
consensus             GCGTTTGATTGACGACATAATTCATAACAGTAAACTATGCTAATTAAAGCTTAGAGCCAA
 
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rJMFF008A14+          ATGGTGGGTGTTGCAAAGTTTATCACATGAAAACAGTCCTACTTAATTACCCATTGTTGT
rJMFF033F20+          ATGGTGGGTGTTGCAAAGTTTATCACATGAAAACAGTCCTACTTAATTACCCATTGTTGT
                      ____________________________________________________________
consensus             ATGGTGGGTGTTGCAAAGTTTATCACATGAAAACAGTCCTACTTAATTACCCATTGTTGT
 
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rJMFF008A14+          TGTTGTTATTGTTATAATTATTGTTAT                                 
rJMFF033F20+          TGTTGTTATTGTTATAATTATTGTTATTGTTATGGATAAATGGACAATAGTTGCCATAAT
                      ____________________________________________________________
consensus             TGTTGTTATTGTTATAATTATTGTTATTGTTATGGATAAATGGACAATAGTTGCCATAAT