| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033C23 | Sequence | 447 | 006374 (5) | ref|XP_006340213.1| | 9e-50 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 814 | 012357 (4) | ref|XP_011000529.1| | 2e-101 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat |
| JMSF002K22 | Sequence | 306 | 006374 (5) | ref|XP_006340213.1| | 4e-17 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 743 | 012357 (4) | ref|XP_011000529.1| | 1e-92 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat |
| JMSF005B24 | Sequence | 268 | 005224 (4) | 524 | 012357 (4) | gb|ACA23472.1| | 9e-45 | chaperonin 60 alpha subunit [Arachis diogoi] | |||
| JMSF051P20 | Sequence | 671 | 006374 (5) | ref|XP_006340213.1| | 6e-109 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 738 | 012357 (4) | ref|XP_011000529.1| | 5e-92 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat |
This contig is upended
. : . : . : . : . : . :
rJMFF033C23+ TCAGCTTAAAAAGGGAATTAAATGAAACAGATTC
____________________________________________________________
consensus TCAGCTTAAAAAGGGAATTAAATGAAACAGATTC
. : . : . : . : . : . :
rJMSF002K22+ TTCTGAGAAGCTTGCTGAGAGAATTGCCAAATTGTCCGGGGGTGTTGCTGT
rJMSF051P20+ GAGAAGCTTGCTGAGAGAATTGCCAAATTGTCCGGGGGTGTTGCTGT
rJMFF033C23+ AATATATGATTCTGAGAAGCTTGCTGAGAGAATTGCCAAATTGTCCGGGGGTGTTGCTGT
____________________________________________________________
consensus AATATATGATTCTGAGAAGCTTGCTGAGAGAATTGCCAAATTGTCCGGGGGTGTTGCTGT
. : . : . : . : . : . :
rJMSF002K22+ AATTAAAGTCGGAGCAGCAACAGAAACTGAGCTTGAGGACCGCAAGCTCCGCATTGAGGA
rJMSF051P20+ AATTAAAGTCGGAGCAGCAACAGAAACTGAGCTTGAGGACCGCAAGCTCCGCATTGAGGA
rJMFF033C23+ AATTAAAGTCGGAGCAGCAACAGAAACTGAGCTTGAGGACCGCAAGCTCCGCATTGAGGA
____________________________________________________________
consensus AATTAAAGTCGGAGCAGCAACAGAAACTGAGCTTGAGGACCGCAAGCTCCGCATTGAGGA
. : . : . : . : . : . :
rJMSF002K22+ TGCAAAGAATGCAACTTTTGCTGCTATTGAGGAGGGCATTGTTCCTGGTGGTGGTGCTGC
rJMSF051P20+ TGCAAAGAATGCAACTTTTGCTGCTATTGAGGAGGGCATTGTTCCTGGTGGTGGTGCTGC
rJMFF033C23+ TGCAAAGAATGCAACTTTTGCTGCTATTGAGGAGGGCATTGTTCCTGGTGGTGGTGCTGC
____________________________________________________________
consensus TGCAAAGAATGCAACTTTTGCTGCTATTGAGGAGGGCATTGTTCCTGGTGGTGGTGCTGC
. : . : . : . : . : . :
rJMSF005B24+ AAGATGCAGATGA
rJMSF002K22+ ATTAGTTCATCTATCAACTCATGTTCCTGCAATTAAGGATAAGCTTGAAGATGCAGATGA
rJMSF051P20+ ATTAGTTCATCTATCAACTCATGTTCCTGCAATTAAGGATAAGCTTGAAGATGCAGATGA
rJMFF033C23+ ATTAGTTCATCTATCAACTCATGTTCCTGCAATTAAGGATAAGCTTGAAGATGCAGATGA
____________________________________________________________
consensus ATTAGTTCATCTATCAACTCATGTTCCTGCAATTAAGGATAAGCTTGAAGATGCAGATGA
. : . : . : . : . : . :
rJMSF005B24+ GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
rJMSF002K22+ GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
rJMSF051P20+ GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
rJMFF033C23+ GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
____________________________________________________________
consensus GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
. : . : . : . : . : . :
rJMSF005B24+ AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
rJMSF002K22+ AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
rJMSF051P20+ AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
rJMFF033C23+ AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
____________________________________________________________
consensus AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
. : . : . : . : . : . :
rJMSF005B24+ TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
rJMSF002K22+ TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
rJMSF051P20+ TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
rJMFF033C23+ TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
____________________________________________________________
consensus TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
. : . : . : . : . : . :
rJMSF005B24+ AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
rJMSF002K22+ AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
rJMSF051P20+ AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
rJMFF033C23+ AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
____________________________________________________________
consensus AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
. : . : . : . : . : . :
rJMSF005B24+ CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
rJMSF002K22+ CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
rJMSF051P20+ CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
rJMFF033C23+ CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
____________________________________________________________
consensus CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
. : . : . : . : . : . :
rJMSF005B24+ AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
rJMSF002K22+ AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
rJMSF051P20+ AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
rJMFF033C23+ AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
____________________________________________________________
consensus AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
. : . : . : . : . : . :
rJMSF005B24+ TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
rJMSF002K22+ TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
rJMSF051P20+ TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
rJMFF033C23+ TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
____________________________________________________________
consensus TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
. : . : . : . : . : . :
rJMSF005B24+ ACAAATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
rJMSF002K22+ ACAAATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
rJMSF051P20+ AC-AATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
rJMFF033C23+ ACAAATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
____________________________________________________________
consensus ACAAATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
. : . : . : . : . : . :
rJMSF005B24+ ACAT
rJMSF002K22+ ACAT
rJMSF051P20+ ACAT
rJMFF033C23+ ACATCCTCCGGTTCTTCATAGTTTTGAGTTGTTGACTGTAGAATTAGTAATAAAGTCAAT
____________________________________________________________
consensus ACATCCTCCGGTTCTTCATAGTTTTGAGTTGTTGACTGTAGAATTAGTAATAAAGTCAAT