Contig 012357:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033C23Sequence447006374 (5)ref|XP_006340213.1|9e-50PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l814012357 (4)ref|XP_011000529.1|2e-101PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat
JMSF002K22Sequence306006374 (5)ref|XP_006340213.1|4e-17PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l743012357 (4)ref|XP_011000529.1|1e-92PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat
JMSF005B24Sequence268005224 (4)524012357 (4)gb|ACA23472.1|9e-45chaperonin 60 alpha subunit [Arachis diogoi]
JMSF051P20Sequence671006374 (5)ref|XP_006340213.1|6e-109PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l738012357 (4)ref|XP_011000529.1|5e-92PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF033C23+ TCAGCTTAAAAAGGGAATTAAATGAAACAGATTC
                      ____________________________________________________________
consensus TCAGCTTAAAAAGGGAATTAAATGAAACAGATTC
 
. : . : . : . : . : . :
rJMSF002K22+ TTCTGAGAAGCTTGCTGAGAGAATTGCCAAATTGTCCGGGGGTGTTGCTGT
rJMSF051P20+ GAGAAGCTTGCTGAGAGAATTGCCAAATTGTCCGGGGGTGTTGCTGT
rJMFF033C23+ AATATATGATTCTGAGAAGCTTGCTGAGAGAATTGCCAAATTGTCCGGGGGTGTTGCTGT
                      ____________________________________________________________
consensus AATATATGATTCTGAGAAGCTTGCTGAGAGAATTGCCAAATTGTCCGGGGGTGTTGCTGT
 
. : . : . : . : . : . :
rJMSF002K22+ AATTAAAGTCGGAGCAGCAACAGAAACTGAGCTTGAGGACCGCAAGCTCCGCATTGAGGA
rJMSF051P20+ AATTAAAGTCGGAGCAGCAACAGAAACTGAGCTTGAGGACCGCAAGCTCCGCATTGAGGA
rJMFF033C23+ AATTAAAGTCGGAGCAGCAACAGAAACTGAGCTTGAGGACCGCAAGCTCCGCATTGAGGA
                      ____________________________________________________________
consensus AATTAAAGTCGGAGCAGCAACAGAAACTGAGCTTGAGGACCGCAAGCTCCGCATTGAGGA
 
. : . : . : . : . : . :
rJMSF002K22+ TGCAAAGAATGCAACTTTTGCTGCTATTGAGGAGGGCATTGTTCCTGGTGGTGGTGCTGC
rJMSF051P20+ TGCAAAGAATGCAACTTTTGCTGCTATTGAGGAGGGCATTGTTCCTGGTGGTGGTGCTGC
rJMFF033C23+ TGCAAAGAATGCAACTTTTGCTGCTATTGAGGAGGGCATTGTTCCTGGTGGTGGTGCTGC
                      ____________________________________________________________
consensus TGCAAAGAATGCAACTTTTGCTGCTATTGAGGAGGGCATTGTTCCTGGTGGTGGTGCTGC
 
. : . : . : . : . : . :
rJMSF005B24+ AAGATGCAGATGA
rJMSF002K22+ ATTAGTTCATCTATCAACTCATGTTCCTGCAATTAAGGATAAGCTTGAAGATGCAGATGA
rJMSF051P20+ ATTAGTTCATCTATCAACTCATGTTCCTGCAATTAAGGATAAGCTTGAAGATGCAGATGA
rJMFF033C23+ ATTAGTTCATCTATCAACTCATGTTCCTGCAATTAAGGATAAGCTTGAAGATGCAGATGA
                      ____________________________________________________________
consensus ATTAGTTCATCTATCAACTCATGTTCCTGCAATTAAGGATAAGCTTGAAGATGCAGATGA
 
. : . : . : . : . : . :
rJMSF005B24+ GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
rJMSF002K22+ GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
rJMSF051P20+ GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
rJMFF033C23+ GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
                      ____________________________________________________________
consensus GAAATTAGGTGCTGACATTGTGCAAAAGGCATTATTAGCACCTGCATCTTTGATAGCCCA
 
. : . : . : . : . : . :
rJMSF005B24+ AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
rJMSF002K22+ AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
rJMSF051P20+ AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
rJMFF033C23+ AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
                      ____________________________________________________________
consensus AAATGCTGGGGTTGAGGGTGAGGTAGTTGTGGAGAAGCTGAAGGACAGTGAATGGGAGAC
 
. : . : . : . : . : . :
rJMSF005B24+ TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
rJMSF002K22+ TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
rJMSF051P20+ TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
rJMFF033C23+ TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
                      ____________________________________________________________
consensus TGGCTACAATGCAATGACCGATACCTACGAGAATCTCGTTGAAGCTGGAGTTATTGATCC
 
. : . : . : . : . : . :
rJMSF005B24+ AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
rJMSF002K22+ AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
rJMSF051P20+ AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
rJMFF033C23+ AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
                      ____________________________________________________________
consensus AGCCAAGGTGACAAGATGCGGTCTGCAGAACTCTGCATCAGTAGCAGGAATGGTGCTCAC
 
. : . : . : . : . : . :
rJMSF005B24+ CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
rJMSF002K22+ CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
rJMSF051P20+ CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
rJMFF033C23+ CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
                      ____________________________________________________________
consensus CACCCAAGCCATTGTTGTGGAGAAGCCAAAACCTAAGGCACCTGCGCCCGCAGCTCCACA
 
. : . : . : . : . : . :
rJMSF005B24+ AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
rJMSF002K22+ AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
rJMSF051P20+ AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
rJMFF033C23+ AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
                      ____________________________________________________________
consensus AGGCCTCACTGTGTGAGATCAATGATCTCAGGAATTTTTGGGCAGTTGGGTCTCTGATTA
 
. : . : . : . : . : . :
rJMSF005B24+ TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
rJMSF002K22+ TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
rJMSF051P20+ TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
rJMFF033C23+ TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
                      ____________________________________________________________
consensus TTAAACTGTGCTCTTTTTGCTATGTGTTGACTTGTTGATTTGAGAATTTTTAGCCACATC
 
. : . : . : . : . : . :
rJMSF005B24+ ACAAATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
rJMSF002K22+ ACAAATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
rJMSF051P20+ AC-AATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
rJMFF033C23+ ACAAATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
                      ____________________________________________________________
consensus ACAAATGTTAGCTTTAGTAGAGAAGATGATGGTGTATGTCAGTCAGAGTTAAACACTTAA
 
. : . : . : . : . : . :
rJMSF005B24+ ACAT
rJMSF002K22+ ACAT
rJMSF051P20+ ACAT
rJMFF033C23+ ACATCCTCCGGTTCTTCATAGTTTTGAGTTGTTGACTGTAGAATTAGTAATAAAGTCAAT
                      ____________________________________________________________
consensus ACATCCTCCGGTTCTTCATAGTTTTGAGTTGTTGACTGTAGAATTAGTAATAAAGTCAAT