Contig 012354:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032P01Sequence597005866 (3)ref|XP_009795523.1|1e-58PREDICTED: DDB1- and CUL4-associated factor 8-like [Nicotiana sylvestris]702012354 (2)emb|CDP08939.1|9e-28unnamed protein product [Coffea canephora]
JMFN034H21Sequence432012354 (2)emb|CDP08939.1|1e-12unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN034H21+                                              ACAGATTGAAAACCTTGTCATAGCA
rJMFF032P01-                            TTCGAACTCCATTATGTACAGATTGAAAACCTTGTCATAGCA
                      ____________________________________________________________
consensus                               TTCGAACTCCATTATGTACAGATTGAAAACCTTGTCATAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN034H21+           ATTAGCAAATTAACTGCTACTTAAAGCATAAGTACATAACTGTCAACTGTAAGCTCCTGG
rJMFF032P01-          ATTAGCAAATTAACTGCTACTTAAAGCATAAGTACATAACTGTCAACTGTAAGCTCCTGG
                      ____________________________________________________________
consensus             ATTAGCAAATTAACTGCTACTTAAAGCATAAGTACATAACTGTCAACTGTAAGCTCCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN034H21+           GAGGTAATGTACATAGGATATAATAAGATAGATGTCTCTGTAAATGCATGTGTACTGCGC
rJMFF032P01-          GAGGTAATGTACATAGGATATAATAAGATAGATGTCTCTGTAAATGCATGTGTACTGCGC
                      ____________________________________________________________
consensus             GAGGTAATGTACATAGGATATAATAAGATAGATGTCTCTGTAAATGCATGTGTACTGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN034H21+           ATGAAATGATTCACAGAGACATTCTAAATGCATACTAAGAGCAAAACGCGTAGCAGCTTT
rJMFF032P01-          ATGAAATGATTCACAGAGACATTCTAAATGCATACTAAGAGCAAAACGCGTAGCAGCTTT
                      ____________________________________________________________
consensus             ATGAAATGATTCACAGAGACATTCTAAATGCATACTAAGAGCAAAACGCGTAGCAGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN034H21+           AGATAACTTTGACTTACGGGATATATTACACAGCTCCTAGCTAATGTTGCATTCTCGTGG
rJMFF032P01-          AGATAACTTTGACTTACGGGATATATTACACAGCTCCTAGCTAATGTTGCATTCTCGTGG
                      ____________________________________________________________
consensus             AGATAACTTTGACTTACGGGATATATTACACAGCTCCTAGCTAATGTTGCATTCTCGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN034H21+           ATTTCCCCCTCCATCCTCGGAATCAACATCTGAAAATCCTAAAACGTAAGCCTCCCTTTC
rJMFF032P01-          ATTTCCCCCTCCATCCTCGGAATCAACATCTGAAAATCCTAAAACGTAAGCCTCCCTTTC
                      ____________________________________________________________
consensus             ATTTCCCCCTCCATCCTCGGAATCAACATCTGAAAATCCTAAAACGTAAGCCTCCCTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN034H21+           ATCTTCTTCATCACTGTCAATGTCCTCCCCACCGCGTCTTCTCTCAATATAAGCCAATGC
rJMFF032P01-          ATCTTCTTCATCACTGTCAATGTCCTCCCCACCGCGTCTTCTCTCAATATAAGCCAATGC
                      ____________________________________________________________
consensus             ATCTTCTTCATCACTGTCAATGTCCTCCCCACCGCGTCTTCTCTCAATATAAGCCAATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN034H21+           TTGCCTCCGATGCAAGCGCAAAACATGCATGACCACGTCAGGGGTGA             
rJMFF032P01-          TTGCCTCCGATGCAAGCGCAAAACATGCATGACCACGTCAGGGGTGAGTGCAACCCGCGA
                      ____________________________________________________________
consensus             TTGCCTCCGATGCAAGCGCAAAACATGCATGACCACGTCAGGGGTGAGTGCAACCCGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032P01-          ATGGTCCTCCCTTTCTTGTTTATTTGCCTCCATTAACTGATCAAATGCAAAGTGTAGAAC
                      ____________________________________________________________
consensus             ATGGTCCTCCCTTTCTTGTTTATTTGCCTCCATTAACTGATCAAATGCAAAGTGTAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032P01-          ATGTATAATCACAAAATAAAACAGTAAGCACGCTTATTATGTTGTTCTCATAGATGAAAT
                      ____________________________________________________________
consensus             ATGTATAATCACAAAATAAAACAGTAAGCACGCTTATTATGTTGTTCTCATAGATGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032P01-          GATTAAATAATAACGCAAAAGCATGAACCTTTGTGGCATTACGAGGCAAAGGATTAATGT
                      ____________________________________________________________
consensus             GATTAAATAATAACGCAAAAGCATGAACCTTTGTGGCATTACGAGGCAAAGGATTAATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032P01-          CCTTTGATGANGGAGTCCAAAGCTTAATATTCTTTTCTATTCCGCAGGTAGCAAAAACTG
                      ____________________________________________________________
consensus             CCTTTGATGANGGAGTCCAAAGCTTAATATTCTTTTCTATTCCGCAGGTAGCAAAAACTG