| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032D11 | Sequence | 536 | 012348 (4) | ref|XP_004238305.1| | 9e-50 | PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Sola | 716 | 012348 (4) | ref|XP_002510457.1| | 5e-99 | ATP-dependent peptidase, putative [Ricinus communis] gb|EEF52644.1| ATP-dependen |
| JMSF037K17 | Sequence | 629 | 012348 (4) | ref|XP_004238305.1| | 8e-63 | PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Sola | 702 | 012348 (4) | ref|XP_002510457.1| | 3e-118 | ATP-dependent peptidase, putative [Ricinus communis] gb|EEF52644.1| ATP-dependen |
This contig is upended
. : . : . : . : . : . :
JMFF032D11- GAA
JMSF037K17- GGAGATTCTGATTCTCGAA
____________________________________________________________
consensus GGAGATTCTGATTCTCGAA
. : . : . : . : . : . :
JMFF032D11- TCCCTTCTTCTCAGATTTCTTCTCCCATGGCTTTACCGCAGTTATTACATCCCACTTCGT
JMSF037K17- TCCCTTCTTCTCAGATTTCTTCTCCCATGGCTTTACCGCAGTTATTACATCCCACTTCGT
____________________________________________________________
consensus TCCCTTCTTCTCAGATTTCTTCTCCCATGGCTTTACCGCAGTTATTACATCCCACTTCGT
. : . : . : . : . : . :
JMFF032D11- CTTCTTCGTTAATCTCCCACAAACCCCACTTAAACCCTGCTTTAACCCCTACGCTCGACT
JMSF037K17- CTTCTTCGTTAATCTCCCACAAACCCCACTTAAACCCTGCTTTAACCCCTACGCTCGACT
____________________________________________________________
consensus CTTCTTCGTTAATCTCCCACAAACCCCACTTAAACCCTGCTTTAACCCCTACGCTCGACT
. : . : . : . : . : . :
JMFF032D11- TTAACAAGTCGTTATCCGCTTCCTACGCCCTCCATTGCCGCCGCCAGCGGCGGCGCAGCC
JMSF037K17- TTAACAAGTCGTTATCCGCTTCCTACGCCCTCCATTGCCGCCGCCAGCGGCGGCGCAGCC
____________________________________________________________
consensus TTAACAAGTCGTTATCCGCTTCCTACGCCCTCCATTGCCGCCGCCAGCGGCGGCGCAGCC
. : . : . : . : . : . :
JMFF032D11- TCACTTCGCTCCGCTGCTCGGCGTCGTCGTTCTCCGAGAAGCACCACACTGGCTCTCCCA
JMSF037K17- TCACTTCGCTCCGCTGCTCGGCGTCGTCGTTCTCCGAGAAGCACCACACTGGCTCTCCCA
____________________________________________________________
consensus TCACTTCGCTCCGCTGCTCGGCGTCGTCGTTCTCCGAGAAGCACCACACTGGCTCTCCCA
. : . : . : . : . : . :
JMFF032D11- AATCCGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
JMSF037K17- AATCCGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
rJMSF037K17+ CGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
rJMFF032D11+ CGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
____________________________________________________________
consensus AATCCGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
. : . : . : . : . : . :
JMFF032D11- CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
JMSF037K17- CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
rJMSF037K17+ CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
rJMFF032D11+ CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
____________________________________________________________
consensus CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
. : . : . : . : . : . :
JMFF032D11- AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCA-CCGGCGCCGCCGAGGTC
JMSF037K17- AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCA-CCGGCGCCGCCGAGGTC
rJMSF037K17+ AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCA-CCGGCGCCGCCGAGGTC
rJMFF032D11+ AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCACCCGGCGCCGCCGAGGTN
____________________________________________________________
consensus AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCA-CCGGCGCCGCCGAGGTC
. : . : . : . : . : . :
JMFF032D11- GGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
JMSF037K17- GGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
rJMSF037K17+ GGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
rJMFF032D11+ CGGTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
____________________________________________________________
consensus GGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
. : . : . : . : . : . :
JMFF032D11- TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTAC
JMSF037K17- TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTACTTGGTG
rJMSF037K17+ TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTACTTGGTG
rJMFF032D11+ TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTACTTGGTG
____________________________________________________________
consensus TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTACTTGGTG
. : . : . : . : . : . :
JMSF037K17- GCGGAGGTCACGTGGCTGGAGGACCGACCACGTGACGGGGATGAGGATCTGGATTCGCTG
rJMSF037K17+ GCGGAGGTCACGTGGCTGGAGGACCGACCACGTGACGGGGATGAGGATCTGGATTCGCTG
rJMFF032D11+ GCGGAGGTCACGTGGCTGGAGGACCGACCACGTGACGGGGATGAGGATCTGGATTCGCTG
____________________________________________________________
consensus GCGGAGGTCACGTGGCTGGAGGACCGACCACGTGACGGGGATGAGGATCTGGATTCGCTG
. : . : . : . : . : . :
JMSF037K17- GCATCCGAAGT
rJMSF037K17+ GCATCCGAAGTGGAGACGTATATGAAAGACGTGATCCGATTATCCAACAGACTTAACGGC
rJMFF032D11+ GCATCCGAAGTGGAGACGTATATGAAAGACGTGATCCGATTATCCAACAGACTTAACGGC
____________________________________________________________
consensus GCATCCGAAGTGGAGACGTATATGAAAGACGTGATCCGATTATCCAACAGACTTAACGGC
. : . : . : . : . : . :
rJMSF037K17+ AAGCCGGAAAAGGAGGCGCAAGATCTGCGGCGGAACCTTTTCCCGACGCCGTTCTCGTTC
rJMFF032D11+ AAGCCGGAAAAGGAGGCGCAAGATCTGCGGCGGAACCTTTTCCCGACGCCGTTCTCGTTC
____________________________________________________________
consensus AAGCCGGAAAAGGAGGCGCAAGATCTGCGGCGGAACCTTTTCCCGACGCCGTTCTCGTTC
. : . : . : . : . : . :
rJMSF037K17+ TTCGTCGGAAGCACGTTCGAAGGCGCGCCCAGAGAACAGCAGGCGTTGCTGGAGCTGGAA
rJMFF032D11+ TTCGTCGGAAGCACGTTCGAAGGCGCGCCCAGAGAACAGCAGGCGTTGCTGGAGCTGGAA
____________________________________________________________
consensus TTCGTCGGAAGCACGTTCGAAGGCGCGCCCAGAGAACAGCAGGCGTTGCTGGAGCTGGAA
. : . : . : . : . : . :
rJMSF037K17+ GACACGGCCATGCGGCTAAAAAGGGAGAAGGAGACATTGCGGAACACTTTGAATTACTTG
rJMFF032D11+ GACACGGCCATGCGGCTAAAAAGGGAGAAGGAGACATTGCGGAACACTTTGAATTACTTG
____________________________________________________________
consensus GACACGGCCATGCGGCTAAAAAGGGAGAAGGAGACATTGCGGAACACTTTGAATTACTTG
. : . : . : . : . : . :
rJMSF037K17+ TCAGCCGCCTCTGCTGTCAAAGATGTGTTCCCATCTTCATGAAATACGGGTGAGTTTTGG
rJMFF032D11+ TCAGCCGCCTCTGCTGTCAAAGATGTGTTCCCATCTTCATGAAATACGGGTGAGTTTTGG
____________________________________________________________
consensus TCAGCCGCCTCTGCTGTCAAAGATGTGTTCCCATCTTCATGAAATACGGGTGAGTTTTGG
. : . : . : . : . : . :
rJMSF037K17+ TGCCCCACAGGTATTATAAGTGTTTCTGTAATCTATACTAT
rJMFF032D11+ TGCCCCACAGGTATTATAAGTGTTTCTGTAATCTATACTATGAACTTGTAAATTTTGATG
____________________________________________________________
consensus TGCCCCACAGGTATTATAAGTGTTTCTGTAATCTATACTATGAACTTGTAAATTTTGATG