Contig 012347:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032C02Sequence548012347 (4)ref|XP_009617759.1|1e-67PREDICTED: bet1-like SNARE 1-1 isoform X1 [Nicotiana tomentosiformis] ref|XP_009694012347 (4)ref|XP_009617759.1|4e-63PREDICTED: bet1-like SNARE 1-1 isoform X1 [Nicotiana tomentosiformis] ref|XP_009
JMSF017E17Sequence522012347 (4)ref|XP_009617759.1|5e-64PREDICTED: bet1-like SNARE 1-1 isoform X1 [Nicotiana tomentosiformis] ref|XP_009694012347 (4)ref|XP_009617759.1|4e-63PREDICTED: bet1-like SNARE 1-1 isoform X1 [Nicotiana tomentosiformis] ref|XP_009

Alignment

This contig is upended


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JMFF032C02-                                                                  ATCAT
JMSF017E17-                                                                  ATCAT
rJMSF017E17+                                                                GATCAT
                      ____________________________________________________________
consensus                                                                   GATCAT
 
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JMFF032C02-           TTAACCTCAAGTTTCCTACTCCTCATCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
JMSF017E17-           TTAACCTCAAGTTTCCTACTCCTCATCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
rJMSF017E17+          TTAACCTCAAGTTTCCTACTCCTCATCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
rJMFF032C02+                                   TCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
                      ____________________________________________________________
consensus             TTAACCTCAAGTTTCCTACTCCTCATCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
 
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JMFF032C02-           TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
JMSF017E17-           TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
rJMSF017E17+          TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
rJMFF032C02+          TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
                      ____________________________________________________________
consensus             TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
 
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JMFF032C02-           TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
JMSF017E17-           TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
rJMSF017E17+          TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
rJMFF032C02+          TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
                      ____________________________________________________________
consensus             TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
 
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JMFF032C02-           GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
JMSF017E17-           GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
rJMSF017E17+          GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
rJMFF032C02+          GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
                      ____________________________________________________________
consensus             GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
 
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JMFF032C02-           TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
JMSF017E17-           TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
rJMSF017E17+          TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
rJMFF032C02+          TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
                      ____________________________________________________________
consensus             TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
 
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JMFF032C02-           TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
JMSF017E17-           TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
rJMSF017E17+          TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
rJMFF032C02+          TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
                      ____________________________________________________________
consensus             TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
 
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JMFF032C02-           TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
JMSF017E17-           TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
rJMSF017E17+          TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
rJMFF032C02+          TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
                      ____________________________________________________________
consensus             TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
 
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JMFF032C02-           ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTCTTTTCTGGTGGTGT
JMSF017E17-           ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTC-TTTCTGGTGGTGT
rJMSF017E17+          ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTC-TTTCTGGTGGTGT
rJMFF032C02+          ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTC-TTTCTGGTGGTGT
                      ____________________________________________________________
consensus             ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTC-TTTCTGGTGGTGT
 
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JMFF032C02-           ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGATATCTACTGGTTTTATAGCTGTTG
JMSF017E17-           ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGAT                       
rJMSF017E17+          ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGATATCTACTGGTTTTATAGCTGTTG
rJMFF032C02+          ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGATATCTACTGGTTTTATAGCTGTTG
                      ____________________________________________________________
consensus             ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGATATCTACTGGTTTTATAGCTGTTG
 
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JMFF032C02-           ATA                                                         
rJMSF017E17+          ATACCAGATTCACATTGATCATATAATGCTGTCTACATCACCCTCTCACAGCCTTAATAT
rJMFF032C02+          ATACCAGATTCACATTGATCATATAATGCTGTCTACATCACCCTCTCACAGCCTTAATAT
                      ____________________________________________________________
consensus             ATACCAGATTCACATTGATCATATAATGCTGTCTACATCACCCTCTCACAGCCTTAATAT
 
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rJMSF017E17+          CCGAACGTATCTGTAAAGATGTTTGATGAAAAATTTAAATACTTTTTGAATAGTATGCCT
rJMFF032C02+          CCGAACGTATCTGTAAAGATGTTTGATGAAAAATTTAAATACTTTTTGAATAGTATGCCT
                      ____________________________________________________________
consensus             CCGAACGTATCTGTAAAGATGTTTGATGAAAAATTTAAATACTTTTTGAATAGTATGCCT
 
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rJMSF017E17+          TCTGGTTCTGGAATGGATATAATGACAAC                               
rJMFF032C02+          TCTGGTTCTGGAATGGATATAATGACAACACTAGTGGTTGTTACCTTGTTATACATACCA
                      ____________________________________________________________
consensus             TCTGGTTCTGGAATGGATATAATGACAACACTAGTGGTTGTTACCTTGTTATACATACCA