Contig 012347:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032C02Sequence548012347 (4)ref|XP_009617759.1|1e-67PREDICTED: bet1-like SNARE 1-1 isoform X1 [Nicotiana tomentosiformis] ref|XP_009694012347 (4)ref|XP_009617759.1|4e-63PREDICTED: bet1-like SNARE 1-1 isoform X1 [Nicotiana tomentosiformis] ref|XP_009
JMSF017E17Sequence522012347 (4)ref|XP_009617759.1|5e-64PREDICTED: bet1-like SNARE 1-1 isoform X1 [Nicotiana tomentosiformis] ref|XP_009694012347 (4)ref|XP_009617759.1|4e-63PREDICTED: bet1-like SNARE 1-1 isoform X1 [Nicotiana tomentosiformis] ref|XP_009

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF032C02- ATCAT
JMSF017E17- ATCAT
rJMSF017E17+ GATCAT
                      ____________________________________________________________
consensus GATCAT
 
. : . : . : . : . : . :
JMFF032C02- TTAACCTCAAGTTTCCTACTCCTCATCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
JMSF017E17- TTAACCTCAAGTTTCCTACTCCTCATCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
rJMSF017E17+ TTAACCTCAAGTTTCCTACTCCTCATCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
rJMFF032C02+ TCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
                      ____________________________________________________________
consensus TTAACCTCAAGTTTCCTACTCCTCATCTCCGCCACCGCGAGCCGCTCACCGGCACAGAGT
 
. : . : . : . : . : . :
JMFF032C02- TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
JMSF017E17- TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
rJMSF017E17+ TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
rJMFF032C02+ TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
                      ____________________________________________________________
consensus TGCAGTTTGCCGCGGGGATTCACGTCACCGGAGCGTGATCTTCTGAAAATCCTGTCTGCA
 
. : . : . : . : . : . :
JMFF032C02- TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
JMSF017E17- TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
rJMSF017E17+ TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
rJMFF032C02+ TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
                      ____________________________________________________________
consensus TAGCGCCATGAATTCTCGGAGGGATCGCAATACTAGAACTGCTCTGTTTGATGGTATTGA
 
. : . : . : . : . : . :
JMFF032C02- GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
JMSF017E17- GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
rJMSF017E17+ GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
rJMFF032C02+ GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
                      ____________________________________________________________
consensus GGAAGGTGGCATTAGGGCTTCATCATCATACTCTTCTCATGAGATTGATGAACATGAGAA
 
. : . : . : . : . : . :
JMFF032C02- TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
JMSF017E17- TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
rJMSF017E17+ TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
rJMFF032C02+ TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
                      ____________________________________________________________
consensus TGAAAAAGCACTGGATGGACTGCAAGATAGAGTCAATCTGCTGAAAAGATTGTCAGGTGA
 
. : . : . : . : . : . :
JMFF032C02- TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
JMSF017E17- TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
rJMSF017E17+ TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
rJMFF032C02+ TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
                      ____________________________________________________________
consensus TATACATGAGGAGGTAGACACCCATAATCGCATGCTGGACAGAATGGGCAATGACATGGA
 
. : . : . : . : . : . :
JMFF032C02- TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
JMSF017E17- TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
rJMSF017E17+ TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
rJMFF032C02+ TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
                      ____________________________________________________________
consensus TGCTTCAAGGGGAGTGTTATCTGGAACCATGGACAAATTCAAGATGGTATTCGAGACGAA
 
. : . : . : . : . : . :
JMFF032C02- ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTCTTTTCTGGTGGTGT
JMSF017E17- ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTC-TTTCTGGTGGTGT
rJMSF017E17+ ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTC-TTTCTGGTGGTGT
rJMFF032C02+ ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTC-TTTCTGGTGGTGT
                      ____________________________________________________________
consensus ATCAAGCCGGAGGATGTTCACTCTTGTGGCATCTTTTGTGGTTCTC-TTTCTGGTGGTGT
 
. : . : . : . : . : . :
JMFF032C02- ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGATATCTACTGGTTTTATAGCTGTTG
JMSF017E17- ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGAT
rJMSF017E17+ ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGATATCTACTGGTTTTATAGCTGTTG
rJMFF032C02+ ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGATATCTACTGGTTTTATAGCTGTTG
                      ____________________________________________________________
consensus ACTATCTCACCAGGTAAATAGTGACGAGCGTTCGGATATCTACTGGTTTTATAGCTGTTG
 
. : . : . : . : . : . :
JMFF032C02- ATA
rJMSF017E17+ ATACCAGATTCACATTGATCATATAATGCTGTCTACATCACCCTCTCACAGCCTTAATAT
rJMFF032C02+ ATACCAGATTCACATTGATCATATAATGCTGTCTACATCACCCTCTCACAGCCTTAATAT
                      ____________________________________________________________
consensus ATACCAGATTCACATTGATCATATAATGCTGTCTACATCACCCTCTCACAGCCTTAATAT
 
. : . : . : . : . : . :
rJMSF017E17+ CCGAACGTATCTGTAAAGATGTTTGATGAAAAATTTAAATACTTTTTGAATAGTATGCCT
rJMFF032C02+ CCGAACGTATCTGTAAAGATGTTTGATGAAAAATTTAAATACTTTTTGAATAGTATGCCT
                      ____________________________________________________________
consensus CCGAACGTATCTGTAAAGATGTTTGATGAAAAATTTAAATACTTTTTGAATAGTATGCCT
 
. : . : . : . : . : . :
rJMSF017E17+ TCTGGTTCTGGAATGGATATAATGACAAC
rJMFF032C02+ TCTGGTTCTGGAATGGATATAATGACAACACTAGTGGTTGTTACCTTGTTATACATACCA
                      ____________________________________________________________
consensus TCTGGTTCTGGAATGGATATAATGACAACACTAGTGGTTGTTACCTTGTTATACATACCA