Contig 012345:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021G02Sequence506003209 (4)ref|XP_011088213.1|9e-28PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Se229012345 (5)
JMFF023E14Sequence472003209 (4)ref|XP_011088213.1|8e-36PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Se718012345 (5)ref|XP_009628102.1|5e-67PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Ni
JMFF031O17Sequence536003209 (4)ref|XP_011088213.1|4e-34PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Se847012345 (5)ref|XP_009628102.1|1e-41PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Ni
JMFN013F15Sequence626012345 (5)ref|XP_009628102.1|1e-67PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Ni
JMSF028O14Sequence616003209 (4)ref|XP_006345367.1|4e-60PREDICTED: probable receptor-like protein kinase At5g18500-like [Solanum tubero779012345 (5)ref|XP_009628102.1|5e-82PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Ni

Alignment

This contig is upended


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rJMSF028O14+                                                               CTTAGAT
                      ____________________________________________________________
consensus                                                                  CTTAGAT
 
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rJMSF028O14+          GGTGTTGATGTTGCTGGAACGTTTGGATACTTAGCTCCTGAATATTTTGTGCATGGAAAA
                      ____________________________________________________________
consensus             GGTGTTGATGTTGCTGGAACGTTTGGATACTTAGCTCCTGAATATTTTGTGCATGGAAAA
 
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rJMSF028O14+          ATAAACGAGAAAATTGATGTATACGCGTTAGGTGTTGTCCTGCTCGAACTTTTATCGGGT
JMFN013F15-              AACGAGAAAATTGATGTATACGCGTTAGGTGTTGTCCTGCTCGAACTTTTATCGGGT
rJMFF023E14+             AACGAGAAAATTGATGTATACGCGTTAGGTGTTGTCCTGCTCGAACTTTTATCGGGT
                      ____________________________________________________________
consensus             ATAAACGAGAAAATTGATGTATACGCGTTAGGTGTTGTCCTGCTCGAACTTTTATCGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028O14+          AAAAAGCCGATTGATAACACAAATGCCAAGGGCCAAGAAAGCTTGGTGCTGTGGGCAAAA
JMFN013F15-           AAAAAGCCGATTGATAACACAAATGCCAAGGGCCAAGAAAGCTTGGTGCTGTGGGCAAAA
rJMFF023E14+          AAAAAGCCGATTGATAACACAAATGCCAAGGGCCAAGAAAGCTTGGTGCTGTGGGCAAAA
rJMFF031O17+                                                               GGCAAAN
                      ____________________________________________________________
consensus             AAAAAGCCGATTGATAACACAAATGCCAAGGGCCAAGAAAGCTTGGTGCTGTGGGCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028O14+          CAAATTCTGAAGAATGGAAAAGCTACAGAATTGCTAGATGCGAGCTTGCTTAATGCATAT
JMFN013F15-           CAAATTCTGAAGAATGGAAAAGCTACAGAATTGCTAGATGCGAGCTTGCTTAATGCATAT
rJMFF023E14+          CAAATTCTGAAGAATGGAAAAGCTACAGAATTGCTAGATGCGAGCTTGCTTAATGCATAT
rJMFF031O17+          CAAATTNTGAAGAATGGAAAAGCTACAGAATTGCTAGATGCGAGCTTGCTTAATGCATAT
                      ____________________________________________________________
consensus             CAAATTCTGAAGAATGGAAAAGCTACAGAATTGCTAGATGCGAGCTTGCTTAATGCATAT
 
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rJMSF028O14+          GACCACGATGAGTTTGACCGAATGGTTTTGGCTGCGACGCTTTGCATAAGAAGAGAACCT
JMFN013F15-           GACCACGATGAGTTTGACCGAATGGTTTTGGCTGCGACGCTTTGCATAAGAAGAGAACCT
rJMFF023E14+          GACCACGATGAGTTTGACCGAATGGTTTTGGCTGCGACGCTTTGCATAAGAAGAGAACCT
rJMFF031O17+          GACCACGATGAGTTTGACCGAATGGTTTTGGCTGCGACGCTTTGCATAAGAAGAGAACCT
                      ____________________________________________________________
consensus             GACCACGATGAGTTTGACCGAATGGTTTTGGCTGCGACGCTTTGCATAAGAAGAGAACCT
 
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rJMSF028O14+          ATTTTTCGTCCTAAAATTGACATTGTTGTGAAACTTCTCGAAGGTGAGCCCGAAACAATT
JMFN013F15-           ATTTTTCGTCCTAAAATTGACATTGTTGTGAAACTTCTCGAAGGTGAGCCCGAAACAATT
rJMFF023E14+          ATTTTTCGTCCTAAAATTGACATTGTTGTGAAACTTCTCGAAGGTGAGCCCGAAACAATT
rJMFF031O17+          ATTTTTCGTCCTAAAATTGACATTGTTGTGAAACTTCTCGAAGGTGAGCCCGAAACAATT
                      ____________________________________________________________
consensus             ATTTTTCGTCCTAAAATTGACATTGTTGTGAAACTTCTCGAAGGTGAGCCCGAAACAATT
 
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rJMSF028O14+          CAATGGGCGAGGCAAAACCTCAATAGTGGCGATGAAGTAGATGAAGTTGGCGGTGAACAG
JMFN013F15-           CAATGGGCGAGGCAAAACCTCAATAGTGGCGATGAAGTAGATGAAGTTGGCGGTGAACAG
rJMFF023E14+          CAATGGGCGAGGCAAAACCTCAATAGTGGCGATGAAGTAGATGAAGTTGGCGGTGAACAG
rJMFF031O17+          CAATGGGCGAGGCAAAACCTCAATAGTGGCGATGAAGTAGATGAAGTTGGCGGTGAACAG
                      ____________________________________________________________
consensus             CAATGGGCGAGGCAAAACCTCAATAGTGGCGATGAAGTAGATGAAGTTGGCGGTGAACAG
 
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rJMSF028O14+          CCTGCATCGAGCATCCAATCTTTTATTAATCTTGCATTGTTAAATTTGGAGGATGATTCC
JMFN013F15-           CCTGCATCGAGCATCCAATCTTTTATTAATCTTGCATTGTTAAATTTGGAGGATGATTCC
rJMFF023E14+          CCTGCATCGAGCATCCAATCTTTTATTAATCTTGCATTGTTAAATTTGGAGGATGATTCC
rJMFF031O17+          CCTGCATCGAGCATCCAATCTTTTATTAATCTTGCATTGTTAAATTTGGAGGATGATTCC
                      ____________________________________________________________
consensus             CCTGCATCGAGCATCCAATCTTTTATTAATCTTGCATTGTTAAATTTGGAGGATGATTCC
 
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rJMSF028O14+          CTCTCGATTACTAGCTCCGACCAAAACATATCTGTAGATGATTATTTGCGGGGCAGATGG
JMFN013F15-           CTCTCGATTACTAGCTCCGACCAAAACATATCTGTAGATGATTATTTGCGGGGCAGATGG
rJMFF023E14+          CTCTCGATTACTAGCTCCGACCAAAACATATCTGTAGATGATTATTTGCGGGGCAGATGG
rJMFF031O17+          CTCTCGATTACTAGCTCCGACCAAAACATATCTGTAGATGATTATTTGCGGGGCAGATGG
                      ____________________________________________________________
consensus             CTCTCGATTACTAGCTCCGACCAAAACATATCTGTAGATGATTATTTGCGGGGCAGATGG
 
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rJMSF028O14+          AGCCGATCTTCGAGCTTCGATTAGAGACATTCTTAAAGCGGATTTTCCTTGTAAATACAC
JMFN013F15-           AGCCGATCTTCGAGCTTCGATTAGAGACATTCTTAAAGCGGATTTTCCTTGTAAATACAC
rJMFF023E14+          AGCCGATCTTCGAGCTTCGATTAGAGACATTCTTAAAGCGGATTTTCCTTGTAAATACAC
rJMFF031O17+          AGCCGATCTTCGAGCTTCGATTAGAGACATTCTTAAAGCGGATTTTCCTTGTAAATACAC
                      ____________________________________________________________
consensus             AGCCGATCTTCGAGCTTCGATTAGAGACATTCTTAAAGCGGATTTTCCTTGTAAATACAC
 
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rJMSF028O14+          CCATTTGGTCTTGGATGAGAGGTAAGCAAGCTAATGACCTCCTCCTTGCCGGTTCCAATT
JMFN013F15-           CCATTTGGTCTTGGATGAGAGGTAAGCAAGCTAATGACCTCCTCCTTGCCGGTTCCAATT
rJMFF023E14+          CCATTTGGTCTTGGATGAGAGGTAAGCAAGCTAATGACCTCCTCCTTGCCGGTTCCAATT
rJMFF031O17+          CCATTTGGTCTTGGATGAGAGGTAAGCAAGCTAATGACCTCCTCCTTGCCGGTTCCAATT
                      ____________________________________________________________
consensus             CCATTTGGTCTTGGATGAGAGGTAAGCAAGCTAATGACCTCCTCCTTGCCGGTTCCAATT
 
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rJMSF028O14+          TGAAGTCCTCGGGTTTTAAAGTTTTGGTACACTTTGTACTGTTTCATTTGGATCCCGGAT
JMFN013F15-           TGAAGTCCTAGGGTTTTAAAGTTTTGGTA                               
rJMFF023E14+          TGAAGTCCTCGGGTTTTAAAGTTTTGGTACACTTTGTACTGTTTCATTTGGATCCCGGAT
rJMFF031O17+          TGAAGTCCTCGGGTTTTAAAGTTTTGGTACACTTTGTACTGTTTCATTTGGATCCCGGAT
                      ____________________________________________________________
consensus             TGAAGTCCTCGGGTTTTAAAGTTTTGGTACACTTTGTACTGTTTCATTTGGATCCCGGAT
 
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rJMSF028O14+          TTCGTCCAAGTGTAAAGCATGTTTGAATGAGCATGATGAACCAATGCCCATG        
rJMFF023E14+          TTCGTCCAAGTGTAAAGCATGTTTGAATGAGCATGATGAACCAATGCCCATGTGAT    
rJMFF021G02+                                                                    TG
rJMFF031O17+          TTCGTCCAAGTGTAAAGCATGTTTGAATGAGCATGATGAACCAATGCCCATGTGATTGTG
                      ____________________________________________________________
consensus             TTCGTCCAAGTGTAAAGCATGTTTGAATGAGCATGATGAACCAATGCCCATGTGATTGTG
 
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rJMFF021G02+          AAATAGTTTAATTCAAGAGCTACCCAGAATCTTGTTCCTTTCTTGGCTTGTTGAAAAGAC
rJMFF031O17+          AAATAGTTTAATTCAAGAGCTACCCAGAATCTTGTTCCTTTCTTGGCTTGTTGAAAAGAC
                      ____________________________________________________________
consensus             AAATAGTTTAATTCAAGAGCTACCCAGAATCTTGTTCCTTTCTTGGCTTGTTGAAAAGAC
 
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rJMFF021G02+          TCCCTTGTAGAATCTTGGCTTTTTATGGTGATTTCTTGAAGAGATGATTGCCTGNGTAAA
rJMFF031O17+          TCCCTTGTAGAATCTTGGCTTTTTATGGTGATTTCTTGAAGAGATGATTGCCTGTGTAAA
                      ____________________________________________________________
consensus             TCCCTTGTAGAATCTTGGCTTTTTATGGTGATTTCTTGAAGAGATGATTGCCTGTGTAAA
 
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rJMFF021G02+          AACTAAAAGACAATGTTGCTTCATCCATCCCCAACACATTAAAAGCCAAAGAAAGGTGGA
rJMFF031O17+          AACTAAAAGACAATGTTGCTTCATCCATCCCCAACACATTAAAAGCCAAAGAAAGGTGGA
                      ____________________________________________________________
consensus             AACTAAAAGACAATGTTGCTTCATCCATCCCCAACACATTAAAAGCCAAAGAAAGGTGGA
 
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rJMFF021G02+          AAAAAAAGGAGAGGGCT                                           
rJMFF031O17+          AAAAAAAGGAGAGGGCTTTGAGCAAAAGCCCCAATCTTTATGTGAAAACAAGTAGAGAGA
                      ____________________________________________________________
consensus             AAAAAAAGGAGAGGGCTTTGAGCAAAAGCCCCAATCTTTATGTGAAAACAAGTAGAGAGA