Contig 012342:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031I04Sequence553007414 (4)ref|XP_008337894.1|6e-53PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica]798012342 (5)ref|XP_009597831.1|1e-103PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot
JMFF036O19Sequence527007414 (4)ref|XP_008337894.1|6e-56PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica]668012342 (5)ref|XP_009597831.1|3e-98PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot
JMFF039O23Sequence497007414 (4)ref|XP_008337894.1|1e-51PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica]764012342 (5)ref|XP_009597831.1|5e-129PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot
JMSF030M19Sequence649007414 (4)gb|AIN75626.1|6e-82K+ transport growth defect-like protein [Hevea brasiliensis]683012342 (5)ref|XP_009597831.1|2e-101PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot
JMSF044K24Sequence364020090ref|XP_010313348.1|1e-44PREDICTED: vacuolar protein sorting-associated protein 4 isoform X3 [Solanum ly627012342 (5)ref|XP_009597831.1|7e-117PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF039O23+ CGTGGGGAAGGAAATGAGAGTGAAG
rJMFF031I04+ AATGAGAGTGAAG
                      ____________________________________________________________
consensus CGTGGGGAAGGAAATGAGAGTGAAG
 
. : . : . : . : . : . :
rJMSF044K24+ CAGAACTACTTGTGCAGATGCAGGGGGTTGGTCATAATGAT
rJMFF039O23+ CAT-CCAGGCGTATCAAAACAGAGCTACTTGTGCAGATGCAGGGGGTTGGACATAATGAT
rJMFF031I04+ CATCCCAGGCGTATCAAAACAGAGCTACTTGTGCAGATGCAGGGGGTTGGACATAATGAT
                      ____________________________________________________________
consensus CATCCCAGGCGTATCAAAACAGAGCTACTTGTGCAGATGCAGGGGGTTGGACATAATGAT
 
. : . : . : . : . : . :
rJMSF044K24+ GATAAAGTGCTTGT-ACTTGCAGCCACAAATACTCCATATGCTCTTGATCAGGCAATCNG
rJMFF039O23+ GATAAAGTTCTTGT-CCTTGCAGCCACAAATACTCCGTATGCTCTTGATCAGGCAATTAG
rJMSF030M19+ CAGCCACAAATACTCCGTATGCTCTTGATCAGGCAATTAG
rJMFF036O19+ CCGTATGCTCTTGATCAGGCAATTAG
rJMFF031I04+ GATAAAGTTCTTGTCCCTTGCAGCCACAAATACTCCGTATGCTCTTGATCAGGCAATTAG
                      ____________________________________________________________
consensus GATAAAGTTCTTGT-CCTTGCAGCCACAAATACTCCGTATGCTCTTGATCAGGCAATTAG
 
. : . : . : . : . : . :
rJMSF044K24+ ACGACGATTTGATAAAAGGATATACATTCCACTCCCAGATGTGAAGGCACGGCAACACAT
rJMFF039O23+ GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
rJMSF030M19+ GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
rJMFF036O19+ GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
rJMFF031I04+ GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
                      ____________________________________________________________
consensus GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
 
. : . : . : . : . : . :
rJMSF044K24+ GTTCAAGGTTCATTTAGGAGACACCCCCCACAATTTGAGCGAAAGTGACTTTGAGGATTT
rJMFF039O23+ GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
rJMSF030M19+ GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
rJMFF036O19+ GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
rJMFF031I04+ GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
                      ____________________________________________________________
consensus GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
 
. : . : . : . : . : . :
rJMSF044K24+ GGGTTATAAAACAGAAGGTTTTTCTGGTTCAGATATATCTGTTTGTGTTAAGGATGTCCT
rJMFF039O23+ GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
rJMSF030M19+ GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
rJMFF036O19+ GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
rJMFF031I04+ GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
                      ____________________________________________________________
consensus GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
 
. : . : . : . : . : . :
rJMSF044K24+ CTTTGAACCTGTACGCAAAACCCAAGATGCTATGTTCTTCCTTAAGACTCCTAATGATAC
rJMFF039O23+ CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
rJMSF030M19+ CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
rJMFF036O19+ CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
rJMFF031I04+ CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
                      ____________________________________________________________
consensus CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
 
. : . : . : . : . : . :
rJMSF044K24+ ATGGATGCCATGTGGACCAAAGCATCCAGGTGCAGTCCAGACAACTATGCAGGAGCTTGC
rJMFF039O23+ ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
rJMSF030M19+ ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
rJMFF036O19+ ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
rJMFF031I04+ ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
                      ____________________________________________________________
consensus ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
 
. : . : . : . : . : . :
rJMSF044K24+ TGCAAAAGGACTCGCCTCAAAGATCATTCCCCCACCCATCACGAAGACAGATTTTGACAA
rJMFF039O23+ TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
rJMSF030M19+ TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
rJMFF036O19+ TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
rJMFF031I04+ TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
                      ____________________________________________________________
consensus TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
 
. : . : . : . : . : . :
rJMSF044K24+ GGTGCTTGCACGTCAAAGACCAACTGTGAGCAAAGCGGATCTTGATGTGCATGAGAGATT
rJMFF039O23+ GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
rJMSF030M19+ GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
rJMFF036O19+ GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
rJMFF031I04+ GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
                      ____________________________________________________________
consensus GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
 
. : . : . : . : . : . :
rJMSF044K24+ NACAAAAGAGTTTGGAGAGGAGGGTTGA
rJMFF039O23+ TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
rJMSF030M19+ TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
rJMFF036O19+ TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
rJMFF031I04+ TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
                      ____________________________________________________________
consensus TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
 
. : . : . : . : . : . :
rJMFF039O23+ TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCAAGGCAGTACATAT
rJMSF030M19+ TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCGAGGCAGTACATAT
rJMFF036O19+ TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCAAGGCAGTACATAT
rJMFF031I04+ TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCAAGGCAGTACATAT
                      ____________________________________________________________
consensus TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCAAGGCAGTACATAT
 
. : . : . : . : . : . :
rJMFF039O23+ CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
rJMSF030M19+ CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
rJMFF036O19+ CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
rJMFF031I04+ CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
                      ____________________________________________________________
consensus CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
 
. : . : . : . : . : . :
rJMFF039O23+ TGTATTTATCCAACTNGAAAT
rJMSF030M19+ TGTATTTATCCAACTGGAAATGTAACATTCAGATTCC
rJMFF036O19+ TGTATTTATCCAACTGGAAAT
rJMFF031I04+ TGTATTTATCCAACTGGAAATGTAACATTCAGATTCCTGAGTTGCAATTACTGTCAATAT
                      ____________________________________________________________
consensus TGTATTTATCCAACTGGAAATGTAACATTCAGATTCCTGAGTTGCAATTACTGTCAATAT