| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031I04 | Sequence | 553 | 007414 (4) | ref|XP_008337894.1| | 6e-53 | PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica] | 798 | 012342 (5) | ref|XP_009597831.1| | 1e-103 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
| JMFF036O19 | Sequence | 527 | 007414 (4) | ref|XP_008337894.1| | 6e-56 | PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica] | 668 | 012342 (5) | ref|XP_009597831.1| | 3e-98 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
| JMFF039O23 | Sequence | 497 | 007414 (4) | ref|XP_008337894.1| | 1e-51 | PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica] | 764 | 012342 (5) | ref|XP_009597831.1| | 5e-129 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
| JMSF030M19 | Sequence | 649 | 007414 (4) | gb|AIN75626.1| | 6e-82 | K+ transport growth defect-like protein [Hevea brasiliensis] | 683 | 012342 (5) | ref|XP_009597831.1| | 2e-101 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
| JMSF044K24 | Sequence | 364 | 020090 | ref|XP_010313348.1| | 1e-44 | PREDICTED: vacuolar protein sorting-associated protein 4 isoform X3 [Solanum ly | 627 | 012342 (5) | ref|XP_009597831.1| | 7e-117 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
This contig is upended
. : . : . : . : . : . :
rJMFF039O23+ CGTGGGGAAGGAAATGAGAGTGAAG
rJMFF031I04+ AATGAGAGTGAAG
____________________________________________________________
consensus CGTGGGGAAGGAAATGAGAGTGAAG
. : . : . : . : . : . :
rJMSF044K24+ CAGAACTACTTGTGCAGATGCAGGGGGTTGGTCATAATGAT
rJMFF039O23+ CAT-CCAGGCGTATCAAAACAGAGCTACTTGTGCAGATGCAGGGGGTTGGACATAATGAT
rJMFF031I04+ CATCCCAGGCGTATCAAAACAGAGCTACTTGTGCAGATGCAGGGGGTTGGACATAATGAT
____________________________________________________________
consensus CATCCCAGGCGTATCAAAACAGAGCTACTTGTGCAGATGCAGGGGGTTGGACATAATGAT
. : . : . : . : . : . :
rJMSF044K24+ GATAAAGTGCTTGT-ACTTGCAGCCACAAATACTCCATATGCTCTTGATCAGGCAATCNG
rJMFF039O23+ GATAAAGTTCTTGT-CCTTGCAGCCACAAATACTCCGTATGCTCTTGATCAGGCAATTAG
rJMSF030M19+ CAGCCACAAATACTCCGTATGCTCTTGATCAGGCAATTAG
rJMFF036O19+ CCGTATGCTCTTGATCAGGCAATTAG
rJMFF031I04+ GATAAAGTTCTTGTCCCTTGCAGCCACAAATACTCCGTATGCTCTTGATCAGGCAATTAG
____________________________________________________________
consensus GATAAAGTTCTTGT-CCTTGCAGCCACAAATACTCCGTATGCTCTTGATCAGGCAATTAG
. : . : . : . : . : . :
rJMSF044K24+ ACGACGATTTGATAAAAGGATATACATTCCACTCCCAGATGTGAAGGCACGGCAACACAT
rJMFF039O23+ GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
rJMSF030M19+ GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
rJMFF036O19+ GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
rJMFF031I04+ GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
____________________________________________________________
consensus GAGACGATTTGACAAGCGGATATACATCCCTCTACCAGACTTGAAGGCACGGCAGCACAT
. : . : . : . : . : . :
rJMSF044K24+ GTTCAAGGTTCATTTAGGAGACACCCCCCACAATTTGAGCGAAAGTGACTTTGAGGATTT
rJMFF039O23+ GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
rJMSF030M19+ GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
rJMFF036O19+ GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
rJMFF031I04+ GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
____________________________________________________________
consensus GTTCAAAGTTCATTTAGGGGACACCCCTCACGACTTGAGTGAAAGTGGCTTCGAAGATTT
. : . : . : . : . : . :
rJMSF044K24+ GGGTTATAAAACAGAAGGTTTTTCTGGTTCAGATATATCTGTTTGTGTTAAGGATGTCCT
rJMFF039O23+ GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
rJMSF030M19+ GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
rJMFF036O19+ GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
rJMFF031I04+ GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
____________________________________________________________
consensus GGCTCATAAAACGGAAGGTTTTTCTGGCTCTGATATATCTGTTTGTGTTAAAGATGTCCT
. : . : . : . : . : . :
rJMSF044K24+ CTTTGAACCTGTACGCAAAACCCAAGATGCTATGTTCTTCCTTAAGACTCCTAATGATAC
rJMFF039O23+ CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
rJMSF030M19+ CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
rJMFF036O19+ CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
rJMFF031I04+ CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
____________________________________________________________
consensus CTTTGAACCTGTTCGTAAAACACAAGATGCTATGTTCTTCATTAAGACTTCTAATGATAC
. : . : . : . : . : . :
rJMSF044K24+ ATGGATGCCATGTGGACCAAAGCATCCAGGTGCAGTCCAGACAACTATGCAGGAGCTTGC
rJMFF039O23+ ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
rJMSF030M19+ ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
rJMFF036O19+ ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
rJMFF031I04+ ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
____________________________________________________________
consensus ATGGATGCCATGTGGACCAAAGCAACCAGGTGCTGTCCAAACAAATATCCAAGAGCTTGC
. : . : . : . : . : . :
rJMSF044K24+ TGCAAAAGGACTCGCCTCAAAGATCATTCCCCCACCCATCACGAAGACAGATTTTGACAA
rJMFF039O23+ TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
rJMSF030M19+ TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
rJMFF036O19+ TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
rJMFF031I04+ TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
____________________________________________________________
consensus TGCAAACGGGCTTGCTTCAAAGATCATTCCCCCACCCATTACAAAGACAGATTTCGATAA
. : . : . : . : . : . :
rJMSF044K24+ GGTGCTTGCACGTCAAAGACCAACTGTGAGCAAAGCGGATCTTGATGTGCATGAGAGATT
rJMFF039O23+ GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
rJMSF030M19+ GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
rJMFF036O19+ GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
rJMFF031I04+ GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
____________________________________________________________
consensus GGTGCTTGCACGACAAAGGCCGACAGTGAGCAAATCTGATCTCGACGTGCACGAGAGATT
. : . : . : . : . : . :
rJMSF044K24+ NACAAAAGAGTTTGGAGAGGAGGGTTGA
rJMFF039O23+ TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
rJMSF030M19+ TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
rJMFF036O19+ TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
rJMFF031I04+ TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
____________________________________________________________
consensus TACACAGGAGTTTGGAGAGGAAGGTTGATGAAACTGACATGATTTGCGTTCACCATTGCT
. : . : . : . : . : . :
rJMFF039O23+ TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCAAGGCAGTACATAT
rJMSF030M19+ TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCGAGGCAGTACATAT
rJMFF036O19+ TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCAAGGCAGTACATAT
rJMFF031I04+ TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCAAGGCAGTACATAT
____________________________________________________________
consensus TTGTTCATGTGCTTGTTCTCCCTCCTATGTTTTCGTCTACTTGTTCAAGGCAGTACATAT
. : . : . : . : . : . :
rJMFF039O23+ CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
rJMSF030M19+ CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
rJMFF036O19+ CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
rJMFF031I04+ CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
____________________________________________________________
consensus CAATCTGAGGCCTCTTGTAATGGGAAATGAACATGAATTTCAATGGTATTATGGATTGCT
. : . : . : . : . : . :
rJMFF039O23+ TGTATTTATCCAACTNGAAAT
rJMSF030M19+ TGTATTTATCCAACTGGAAATGTAACATTCAGATTCC
rJMFF036O19+ TGTATTTATCCAACTGGAAAT
rJMFF031I04+ TGTATTTATCCAACTGGAAATGTAACATTCAGATTCCTGAGTTGCAATTACTGTCAATAT
____________________________________________________________
consensus TGTATTTATCCAACTGGAAATGTAACATTCAGATTCCTGAGTTGCAATTACTGTCAATAT