Contig 012341:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF031H03-                                                     CTGATGCTTCCAAATCTT
JMSF038C01-                        GGTATGATGAACAAGAATGGAGAGCTTGGCTGATGCTTCCAAATCTT
                      ____________________________________________________________
consensus                          GGTATGATGAACAAGAATGGAGAGCTTGGCTGATGCTTCCAAATCTT
 
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JMFF031H03-           CTTTAAAGTACTGCCAACCTAGCCGGAGTTTCATCGGAGCACTGCCGGAAAACACCTTTT
JMSF038C01-           CTTTAAAGTACTGCCAACCTAGCCGGAGTTTCATCGGAGCACTGCCGGAAAACACCTTTT
                      ____________________________________________________________
consensus             CTTTAAAGTACTGCCAACCTAGCCGGAGTTTCATCGGAGCACTGCCGGAAAACACCTTTT
 
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JMFF031H03-           TCCGATGGCTTTCCCCCGGCTCATGATCTGAACAACTCACATAACTTTGTTGGCTAAACA
JMSF038C01-           TCCGATGGCTTTCCCCCGGCTCATGATCTGAACAACTCACATAACTTTGTTGGCTAAACA
                      ____________________________________________________________
consensus             TCCGATGGCTTTCCCCCGGCTCATGATCTGAACAACTCACATAACTTTGTTGGCTAAACA
 
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JMFF031H03-           AGGAGTAAAGCAAGATTAGAGCAGAGAAAATGGTTCAGTTCTCTTCTCTTTTCAATGGTT
JMSF038C01-           AGGAGTAAAGCAAGATTAGAGCAGAGAAAATGGTTCAGTTCTCTTCTCTTTTCAATGGTT
                      ____________________________________________________________
consensus             AGGAGTAAAGCAAGATTAGAGCAGAGAAAATGGTTCAGTTCTCTTCTCTTTTCAATGGTT
 
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JMFF031H03-           TTGCGAAAACAATTTCGAAAAAGAGTGGGAGGAAAAACAGCAGAGAAGATGTTGGGAGAG
JMSF038C01-           TTGCGAAAACAATTTCGAAAAAGAGTGGGAGGAAAAACAGCAGAGAAGATGTTGGGAGAG
                      ____________________________________________________________
consensus             TTGCGAAAACAATTTCGAAAAAGAGTGGGAGGAAAAACAGCAGAGAAGATGTTGGGAGAG
 
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JMFF031H03-           AAGCTGCAAATGCACTTGCTAAGGAAGCAAGAAAGAATGAGCTAATCCTCTCCACTTCTG
JMSF038C01-           AAGCTGCAAATGCACTTGCTAAGGAAGCAAGAAAGAATGAGCTAATCCTCTCCACTTCTG
                      ____________________________________________________________
consensus             AAGCTGCAAATGCACTTGCTAAGGAAGCAAGAAAGAATGAGCTAATCCTCTCCACTTCTG
 
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JMFF031H03-           GCTTTGTGAATGCCATTTCCTCTCACAATTGCGCTTCCCTGCATTCCAGACAAGGCAAGA
JMSF038C01-           GCTTTGTGAATGCCATTTCCTCTCACAATTGCGCTTCCCTGCATTCCAGACAAGGCAAGA
                      ____________________________________________________________
consensus             GCTTTGTGAATGCCATTTCCTCTCACAATTGCGCTTCCCTGCATTCCAGACAAGGCAAGA
 
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JMFF031H03-           AGGGAGCCAATCAAGATCGCGCCATTGTGTGGGAGGAGTTTGGGGGGCAAGAGGACATGA
JMSF038C01-           AGGGAGCCAATCAAGATCGCGCCATTGTGTGGGAGGAGTTTGGGGGGCAAGAGGACATGA
                      ____________________________________________________________
consensus             AGGGAGCCAATCAAGATCGCGCCATTGTGTGGGAGGAGTTTGGGGGGCAAGAGGACATGA
 
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JMFF031H03-           TTTTCTACGGGGTGTTTGATGGGCATGGTCCCTGGGGGCATCTTGTAGCTAAGAGAGTCA
JMSF038C01-           TTTTCTGCGGGGTGTTTGATGGGCATGGTCCCTGGGGGCATCTTGTAGCTAAGAGAGTCA
rJMSF038C01+                                                  TCTTGTAGCTAAGAGAGTCA
                      ____________________________________________________________
consensus             TTTTCTGCGGGGTGTTTGATGGGCATGGTCCCTGGGGGCATCTTGTAGCTAAGAGAGTCA
 
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JMFF031H03-           GGGAATTGGTGCCATCATCTTTGCTGTGTAACTGGCAAAAAGCCCTTGCTCATAACATGG
JMSF038C01-           GGGAATTGGTGCCATCATCTTTGCTGTGTAACTGGCAAAAAGCCCTTGCTCATAACATGG
rJMSF038C01+          GGGAATTGGTGCCATCATCTTTGCTGTGTAACTGGCAAAAAGCCCTTGCTCATAACATGG
                      ____________________________________________________________
consensus             GGGAATTGGTGCCATCATCTTTGCTGTGTAACTGGCAAAAAGCCCTTGCTCATAACATGG
 
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JMFF031H03-           ACAA                                                        
JMSF038C01-           ACAACCTAGGATTCGACAACTGCCTGCTCGACGTGTGGAAACAATCTCACATCAAGGCCT
rJMSF038C01+          ACAACCTAGGATTCGACAACTGCCTGCTCGACGTGTGGAAACAATCTCACATCAAGGCCT
                      ____________________________________________________________
consensus             ACAACCTAGGATTCGACAACTGCCTGCTCGACGTGTGGAAACAATCTCACATCAAGGCCT
 
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JMSF038C01-           GTTCTGAAGTT                                                 
rJMSF038C01+          GTTCTGAAGTTGATCAACAACTCGAGCAGCAAGCGGGTTCCTTTTACAGCGGCACAACTG
                      ____________________________________________________________
consensus             GTTCTGAAGTTGATCAACAACTCGAGCAGCAAGCGGGTTCCTTTTACAGCGGCACAACTG
 
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rJMSF038C01+          CGCTAACCGTTGTCAAACAGGGTGATGTGATGGTAGTAGCGAATGTTGGAGGCTCGAGGG
rJMFF031H03+                           CAGGGTGATGTGATGGTAGTAGCGAATGTTGGAGACTCGAGGG
                      ____________________________________________________________
consensus             CGCTAACCGTTGTCAAACAGGGTGATGTGATGGTAGTAGCGAATGTTGGAGGCTCGAGGG
 
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rJMSF038C01+          CTGTCTTGGCTACAGCTGATGATGATGGTAACTTGGTAGCAGTTCAACTAACTGTTGACC
rJMFF031H03+          CTGTCTTGGCTACAGCTGATGATGATGGTAACTTGGTAGCAGTTCAACTAACTGTTGACC
                      ____________________________________________________________
consensus             CTGTCTTGGCTACAGCTGATGATGATGGTAACTTGGTAGCAGTTCAACTAACTGTTGACC
 
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rJMSF038C01+          TTAAACCCAACTTACCTGGCGAAAGAGAGCGAATAATGAGGTCGAAAGGCAGGGTGTGGT
rJMFF031H03+          TTAAACCCAACTTACCTGGCGAAAGAGAGCGAATAATGAGGTCGAAAGGCAGGGTGTGGT
                      ____________________________________________________________
consensus             TTAAACCCAACTTACCTGGCGAAAGAGAGCGAATAATGAGGTCGAAAGGCAGGGTGTGGT
 
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rJMSF038C01+          CGTCGGACGATGAACCGGGGGTGTATAGAGTGTGGATGCCAAATCCAAATGGAGGAGTAG
rJMFF031H03+          CGTCGGACGATGAACCGGGGGTGTATAGAGTGTGGATGCCAAATCCAAATGGAGGAGTAG
                      ____________________________________________________________
consensus             CGTCGGACGATGAACCGGGGGTGTATAGAGTGTGGATGCCAAATCCAAATGGAGGAGTAG
 
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rJMSF038C01+          CAGTGGAAGGGCCAGGACTTGCAGTGTCAAGAGCCTTTGGGGATTACTATATCAAGGACT
rJMFF031H03+          CAGTGGAAGGGCCAGGACTTGCAGTGTCAAGAGCCTTTGGGGATTACTATATCAAGGACT
                      ____________________________________________________________
consensus             CAGTGGAAGGGCCAGGACTTGCAGTGTCAAGAGCCTTTGGGGATTACTATATCAAGGACT
 
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rJMSF038C01+          TTGGCCTTATTTCTGAACCAGAATTCACCTTCAGAAACATAACCTTCAGAGACCAGTTTG
rJMFF031H03+          TTGGCCTTATTTCTGAACCAGAATTCACCTTCAGAAACATAACCTTCAGAGACCAGTTTG
                      ____________________________________________________________
consensus             TTGGCCTTATTTCTGAACCAGAATTCACCTTCAGAAACATAACCTTCAGAGACCAGTTTG
 
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rJMSF038C01+          CCATTCTGGCCACAGATGGAGTGTGGGATGTGGTGTCGAACCAAGAAGCGGTGGAGATAG
rJMFF031H03+          CCATTCTGGCCACAGATGGAGTGTGGGATGTGGTGTCGAACCAAGAAGCGGTGGAGATAG
                      ____________________________________________________________
consensus             CCATTCTGGCCACAGATGGAGTGTGGGATGTGGTGTCGAACCAAGAAGCGGTGGAGATAG
 
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rJMSF038C01+          TGTCTTCGGCCCCAGAGAGAGGAGAGTCGGCGAAGAGGCTGGTGGAACATGCAGTTTGCG
rJMFF031H03+          TGTCTTCGGCCCCAGAGAGAGGAGAGTCGGCGAAGAGGCTGGTGGAACATGCAGTTTGCG
                      ____________________________________________________________
consensus             TGTCTTCGGCCCCAGAGAGAGGAGAGTCGGCGAAGAGGCTGGTGGAACATGCAGTTTGCG
 
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rJMSF038C01+          CGTGGAAGCGCACCAGAAGGGGAATTGCAATGGACGACATGTCTGCCATTTGCTTATTCT
rJMFF031H03+          CGTGGAAGCGCACCAGAAGGGGAATTGCAATGGACGACATGTCTGCCATTTGCTTATTCT
                      ____________________________________________________________
consensus             CGTGGAAGCGCACCAGAAGGGGAATTGCAATGGACGACATGTCTGCCATTTGCTTATTCT
 
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rJMSF038C01+          TTCACAACAAATTGATTGTGTGAAGAAGAAGAAGAAGAAGATTGCATGATATGATGCAGA
rJMFF031H03+          TTCACAACAAATTGATTGTGTGAAGAAGAAGAAGAAGAAGATTGCATGATATGATGCAGA
                      ____________________________________________________________
consensus             TTCACAACAAATTGATTGTGTGAAGAAGAAGAAGAAGAAGATTGCATGATATGATGCAGA
 
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rJMSF038C01+          AGCAGCCAATCACCACTACTTTAAACGCCATATGTAAATACTAATCTGAATGAATC    
rJMFF031H03+          AGCAGCCAATCACCACTACTTTAAACGCCATATGTAAATACTAATCTGAATGAATCATGG
                      ____________________________________________________________
consensus             AGCAGCCAATCACCACTACTTTAAACGCCATATGTAAATACTAATCTGAATGAATCATGG
 
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rJMFF031H03+          TGCAAACATTACAACACTAAACTTAATTCCCAAAACCAAATTATCTGTAGTTTCCATTCC
                      ____________________________________________________________
consensus             TGCAAACATTACAACACTAAACTTAATTCCCAAAACCAAATTATCTGTAGTTTCCATTCC
 
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rJMFF031H03+          CCTATACTGTATTATTCATTCCAACTTTACCAACTTTCTCTCTTTATGTATAAAGTATAA
                      ____________________________________________________________
consensus             CCTATACTGTATTATTCATTCCAACTTTACCAACTTTCTCTCTTTATGTATAAAGTATAA