| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031E17 | Sequence | 622 | 012339 (5) | ref|XP_009785301.1| | 1e-67 | PREDICTED: coiled-coil domain-containing protein 115-like isoform X1 [Nicotiana | 759 | 012339 (5) | ref|XP_009785301.1| | 9e-37 | PREDICTED: coiled-coil domain-containing protein 115-like isoform X1 [Nicotiana |
| JMSF044C18 | Sequence | 799 | 012339 (5) | ref|XP_009785301.1| | 6e-70 | PREDICTED: coiled-coil domain-containing protein 115-like isoform X1 [Nicotiana | 783 | 012339 (5) | ref|XP_009785301.1| | 1e-49 | PREDICTED: coiled-coil domain-containing protein 115-like isoform X1 [Nicotiana |
| JMSF045C18 | Sequence | 713 | 012339 (5) | ref|XP_009785301.1| | 3e-35 | PREDICTED: coiled-coil domain-containing protein 115-like isoform X1 [Nicotiana | |||||
This contig is upended
. : . : . : . : . : . :
JMFF031E17- AATCACAATGCCGGCCATGGCGGATGAAACGGAAACGAAAATCTCTGACG
JMSF044C18- CAATGCCGGCCATGGCGGATGAAACGGAAACGAAAATCTCTGACG
____________________________________________________________
consensus AATCACAATGCCGGCCATGGCGGATGAAACGGAAACGAAAATCTCTGACG
. : . : . : . : . : . :
JMFF031E17- ATGGAGAAGAAGGAATTGTAGAAAAAGACGCAAAAGTATTAAATTTTCTCGATTCATTGG
JMSF044C18- ATGGAGAAGAAGGAATTGTAGAAAAAGACGCAAAAGTATTAAATTTTCTCGATTCATTGG
____________________________________________________________
consensus ATGGAGAAGAAGGAATTGTAGAAAAAGACGCAAAAGTATTAAATTTTCTCGATTCATTGG
. : . : . : . : . : . :
JMFF031E17- ATAGCTATCTGATTCTCATGGACACTTTATCTTCAACACTTCGCCAGGGATGTCTGGAGT
JMSF044C18- ATAGCTATCTGATTCTCATGGACACTTTATCTTCAACACTTCGCCAGGGATGTCTGGAGT
____________________________________________________________
consensus ATAGCTATCTGATTCTCATGGACACTTTATCTTCAACACTTCGCCAGGGATGTCTGGAGT
. : . : . : . : . : . :
JMFF031E17- TGGCTAGTGCTCGACTTTCTATGGGTGCGTCACGCATCAACAGCTCATTGCTTGACCTCA
JMSF044C18- TGGCTAGTGCTCGACTTTCTATGGGTGCGTCACGCATCAACAGCTCATTGCTTGACCTCA
rJMSF044C18+ TTCTATGGGTGCGTCACGCATCAACAGCTCATTGCTTGACCTCA
____________________________________________________________
consensus TGGCTAGTGCTCGACTTTCTATGGGTGCGTCACGCATCAACAGCTCATTGCTTGACCTCA
. : . : . : . : . : . :
JMFF031E17- AACCACATTCTGCCTCAACTACATTGGAAATTGATCATTTGGAAGGATCCAGGATGGAGC
JMSF044C18- AACCACATTCTGCCTCAACTACATTGGAAATTGATCATTTGGAAGGATCCAGGATGGAGC
rJMSF045C18+ GGAAGGATCCAGGATGGAGC
rJMSF044C18+ AACCACATTCTGCCTCAACTACATTGGAAATTGATCATTTGGAAGGATCCAGGATGGAGC
rJMFF031E17+ ACATTGGAAATTGATCATTTGGAAGGATCCAGGATGGAGC
____________________________________________________________
consensus AACCACATTCTGCCTCAACTACATTGGAAATTGATCATTTGGAAGGATCCAGGATGGAGC
. : . : . : . : . : . :
JMFF031E17- AGGTGCATTTCAGATTATGCAAGTGGGTTTCTTCTGCTAGTCCAGAAAGCTCACCCAAGG
JMSF044C18- AGGTGCATTTCAGATTATGCAAGTGGGTTTCTTCTGCTAGTCCAGAAAGCTCACCCAAGG
rJMSF045C18+ AGGTGCATTTCAGATTATGCAAGTGGGTTTCTTNTGCTAGTCCAGAAAGCTCACCCAAGG
rJMSF044C18+ AGGTGCATTTCAGATTATGCAAGTGGGTTTCTTCTGCTAGTCCAGAAAGCTCACCCAAGG
rJMFF031E17+ AGGTGCATTTCAGATTATGCAAGTGGGTTTCTTCTGCTAGTCCAGAAAGCTCACCCAAGG
____________________________________________________________
consensus AGGTGCATTTCAGATTATGCAAGTGGGTTTCTTCTGCTAGTCCAGAAAGCTCACCCAAGG
. : . : . : . : . : . :
JMFF031E17- AAGGTAAATATGATGAGGACAAGCTGTTGCATAGAAAATCTCACAGTCCAGAGTCCACGC
JMSF044C18- AAGGTAAATATGATGAGGACAAGCTGTTGCATAGAAAATCTCACAGTCCAGAGTCCACGC
rJMSF045C18+ AAGGTAAATATGATGAGGACAAGCTGTTGCATAGAAAATCTCACAGTCCAGAGTCCACGC
rJMSF044C18+ AAGGTAAATATGATGAGGACAAGCTGTTGCATAGAAAATCTCACAGTCCAGAGTCCACGC
rJMFF031E17+ AAGGTAAATATGATGAGGACAAGCTGTTGCATAGAAAATCTCACAGTCCAGAGTCCACGC
____________________________________________________________
consensus AAGGTAAATATGATGAGGACAAGCTGTTGCATAGAAAATCTCACAGTCCAGAGTCCACGC
. : . : . : . : . : . :
JMFF031E17- ACCATGGTGATGATTCTGAAGCTCAGGGGAAGAAGCAAGAAAGTAATGGATCTCCGCGAG
JMSF044C18- ACCATGGTGATGATTCTGAAGCTCAGGGGAAGAAGCAAGAAAGTAATGGATCTCCGCGAG
rJMSF045C18+ ACCATGGTGATGATTCTGAAGCTCAGGGGAAGAAGCAAGAAAGTAATGGATCTCCGCGAG
rJMSF044C18+ ACCATGGTGATGATTCTGAAGCTCAGGGGAAGAAGCAAGAAAGTAATGGATCTCCGCGAG
rJMFF031E17+ ACCATGGTGATGATTCTGAAGCTCAGGGGAAGAAGCAAGAAAGTAATGGATCTCCGCGAG
____________________________________________________________
consensus ACCATGGTGATGATTCTGAAGCTCAGGGGAAGAAGCAAGAAAGTAATGGATCTCCGCGAG
. : . : . : . : . : . :
JMFF031E17- ACCAAGCTCAGAGAGAGCGGCTCAAATCACTATCTATGTTTGGAATGCTGGTTTCTCCAA
JMSF044C18- ACCAAGCTCAGAGAGAGCGGCTCAAATCACTATCTATGTTTGGAATGCTGGTTTCTCCAA
rJMSF045C18+ ACCAAGCTCAGAGAGAGCGGCTCAAATCACTATCTATGTTTGGAATGCTGGTTTCTCCAA
rJMSF044C18+ ACCAAGCTCAGAGAGAGCGGCTCAAATCACTATCTATGTTTGGAATGCTGGTTTCTCCAA
rJMFF031E17+ ACCAAGCTCAGAGAGAGCGGCTCAAATCACTATCTATGTTTGGAATGCTGGTTTCTCCAA
____________________________________________________________
consensus ACCAAGCTCAGAGAGAGCGGCTCAAATCACTATCTATGTTTGGAATGCTGGTTTCTCCAA
. : . : . : . : . : . :
JMFF031E17- AGCTTCGTGCTGCCCAACTTTCATATGAGACAGCTCTGGATACTATCATAGAAATAGCAA
JMSF044C18- AGCTTCGTGCTGCCCAACTTTCATATGAGACAGCTCTGGATACTATCATAGAAATAGCAA
rJMSF045C18+ AGCTTCGTGCTGCCCAACTTTCATATGAGACAGCTCTGGATACTATCATAGAAATAGCAA
rJMSF044C18+ AGCTTCGTGCTGCCCAACTTTCATATGAGACAGCTCTGGATACTATCATAGAAATAGCAA
rJMFF031E17+ AGCTTCGTGCTGCCCAACTTTCATATGAGACAGCTCTGGATACTATCATAGAAATAGCAA
____________________________________________________________
consensus AGCTTCGTGCTGCCCAACTTTCATATGAGACAGCTCTGGATACTATCATAGAAATAGCAA
. : . : . : . : . : . :
JMFF031E17- ACATGCGAACATCACTGCTGCATGCGTAC
JMSF044C18- ACATGCGAACATCACTGCTGCATGCGTACAATCAAGTGGTGGAAGATATGAAAGTCACTC
rJMSF045C18+ ACATGCGAACATCACTGCTGCATGCGTACAATCAAGTGGTGGAAGATATGAAAGTCACTC
rJMSF044C18+ ACATGCGAACATCACTGCTGCATGCGTACAATCAAGTGGTGGAAGATATGAAAGTCACTC
rJMFF031E17+ ACATGCGAACATCACTGCTGCATGCGTACAATCAAGTGGTGGAAGATATGAAAGTCACTC
____________________________________________________________
consensus ACATGCGAACATCACTGCTGCATGCGTACAATCAAGTGGTGGAAGATATGAAAGTCACTC
. : . : . : . : . : . :
JMSF044C18- CAAATGACTAGAGCTTATGTACCCGGGATGACTTTTCATTGGAAGGAATCGAG-TTGTTT
rJMSF045C18+ CAAATGACTAGAGCTTATGTACCCGGGATGACTTTTCATTGGAAGGAATCGAG-TTGTTT
rJMSF044C18+ CAAATGACTAGAGCTTATGTACCCGGGATGACTTTTCATTGGAAGGAATCGAG-TTGTTT
rJMFF031E17+ CAAATGACTAGAGCTTATGTACCCGGGATGACTTTTCATTGGAAGGAATCGAGTTTGTTT
____________________________________________________________
consensus CAAATGACTAGAGCTTATGTACCCGGGATGACTTTTCATTGGAAGGAATCGAG-TTGTTT
. : . : . : . : . : . :
JMSF044C18- ATTTTCTAATCTAAATTTAGAGCATTTGAAGCTCCTCACACCTCATCTGCTTGGTTCTCC
rJMSF045C18+ ATTTTCTAATCTAAATTTAGAGCATTTGAAGCTCCTCACACCTCATCTGCTTGGTTCTCC
rJMSF044C18+ ATTTTCTAATCTAAATTTAGAGCATTTGAAGCTCCTCACACCTCATCTGCTTGGTTCTCC
rJMFF031E17+ ATTTTCTAATCTAAATTTAGAGCATTTGAAGCTCCTCACACCTCATCTGCTTGGTTCTCC
____________________________________________________________
consensus ATTTTCTAATCTAAATTTAGAGCATTTGAAGCTCCTCACACCTCATCTGCTTGGTTCTCC
. : . : . : . : . : . :
JMSF044C18- TCCAAAATCTATCTCGCAAACCATTTTGACTTG
rJMSF045C18+ TCCAAAATCTATCTCGCAAACCATTTTGACTTGCTTGGTGGATGTATGCTCGATTTTTGT
rJMSF044C18+ TCCAAAATCTATCTCGCAAACCATTTTGACTTGCTTGGTGGATGTATGCTCGATTTTTGT
rJMFF031E17+ TCCAAAATCTATCTCGCAAACCATTTTGACTTGCTTGGTGGATGTATGCTCGATTTTTGT
____________________________________________________________
consensus TCCAAAATCTATCTCGCAAACCATTTTGACTTGCTTGGTGGATGTATGCTCGATTTTTGT
. : . : . : . : . : . :
rJMSF045C18+ AAAAGATTGTAGCTTAGCTAGAAATCACAGTTAAGCTTATCATATAGTTAATGATGGTAG
rJMSF044C18+ AAAAGATTGTAGCTTAGCTAGAAATCACAGTTAAGCTTATCATATAGTTAATGATGGTAG
rJMFF031E17+ AAAAGATTGTAGCTTAGCTAGAAATCACAGTTAAGCTTATCATATAGTTAATGATGGTAG
____________________________________________________________
consensus AAAAGATTGTAGCTTAGCTAGAAATCACAGTTAAGCTTATCATATAGTTAATGATGGTAG
. : . : . : . : . : . :
rJMSF045C18+ GCTGTAGCATTGCCTGCCTTTCTTTATGACAGTCAAATGCAGAAAGTCCAGTCTGTAAAT
rJMSF044C18+ GCTGTAGCATTGCCTGCCTTTCTTTATGACAGTCAAATGCAGAAAGT-CAGTCTGTAAAT
rJMFF031E17+ GCTGTAGCATTGCCTGCCTTTCTTTATGACAGTCAAATGCAGAAAGT-CAGTCTGTAAAT
____________________________________________________________
consensus GCTGTAGCATTGCCTGCCTTTCTTTATGACAGTCAAATGCAGAAAGT-CAGTCTGTAAAT
. : . : . : . : . : . :
rJMSF045C18+ TTTTATACATGCATTCATCTT
rJMSF044C18+ TTTTATACATGCATTCATCTT
rJMFF031E17+ TTTTATACATGCATTCATCTTTGATGTTATGTACTTTTCTATCGTAATAAACTGTCCCTT
____________________________________________________________
consensus TTTTATACATGCATTCATCTTTGATGTTATGTACTTTTCTATCGTAATAAACTGTCCCTT